Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.36895 * 2 1 4 4 C 1.52005 * 110.42266 * 122.37091 * 2 1 3 5 5 C 1.54482 * 108.53840 * 225.22229 * 4 2 1 6 6 S 1.82351 * 110.15480 * 321.24726 * 5 4 2 7 7 O 1.42100 * 109.47058 * 201.29354 * 6 5 4 8 8 C 1.79581 * 106.37978 * 319.48403 * 6 5 4 9 9 C 1.55066 * 109.79548 * 87.87819 * 8 6 5 10 10 N 1.39618 * 110.25680 * 288.52072 * 9 8 6 11 11 C 1.46894 * 111.30358 * 193.39758 * 10 9 8 12 12 C 1.50703 * 109.46826 * 297.87488 * 11 10 9 13 13 O 1.21277 * 120.00410 * 353.99151 * 12 11 10 14 14 N 1.34779 * 119.99779 * 173.98873 * 12 11 10 15 15 C 1.46502 * 120.00251 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47150 * 90.00129 * 15 14 12 17 17 H 1.07999 * 119.99794 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99761 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99859 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47425 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47216 * 119.99561 * 20 18 16 23 23 H 1.48499 * 109.47143 * 239.99487 * 20 18 16 24 24 C 1.46507 * 119.99961 * 0.02562 * 14 12 11 25 25 C 1.52999 * 109.47124 * 89.99908 * 24 14 12 26 26 C 1.47199 * 109.47436 * 179.97438 * 25 24 14 27 27 N 7.30564 * 49.64246 * 233.75160 * 2 1 3 28 28 H 1.09000 * 109.47300 * 300.00163 * 1 2 3 29 29 H 1.09002 * 109.47240 * 60.00015 * 1 2 3 30 30 H 1.08998 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.62095 * 344.93716 * 4 2 1 32 32 H 1.08999 * 109.62188 * 105.50495 * 4 2 1 33 33 H 1.09002 * 109.35551 * 81.46288 * 5 4 2 34 34 H 1.09008 * 109.34971 * 201.17918 * 5 4 2 35 35 H 1.08995 * 109.41154 * 207.97709 * 8 6 5 36 36 H 1.09000 * 109.41396 * 327.77857 * 8 6 5 37 37 H 1.09000 * 109.37366 * 48.66381 * 9 8 6 38 38 H 1.09010 * 109.36863 * 168.41400 * 9 8 6 39 39 H 1.09002 * 109.47296 * 57.87261 * 11 10 9 40 40 H 1.09000 * 109.47246 * 177.87427 * 11 10 9 41 41 H 1.08993 * 109.47206 * 210.00587 * 15 14 12 42 42 H 1.09001 * 109.46766 * 330.00186 * 15 14 12 43 43 H 0.97005 * 119.99835 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.47164 * 209.99757 * 24 14 12 45 45 H 1.08994 * 109.46997 * 329.99450 * 24 14 12 46 46 H 1.09005 * 109.47306 * 300.00139 * 25 24 14 47 47 H 1.09005 * 109.47172 * 59.99683 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0604 -0.7627 1.2031 5 6 3.1986 0.0617 1.8445 6 16 4.2128 0.8471 0.5485 7 8 5.4904 1.1723 1.0789 8 6 4.3993 -0.3721 -0.7569 9 6 3.2152 -0.2614 -1.7519 10 7 2.0423 -0.7367 -1.1623 11 6 0.9867 -0.9410 -2.1631 12 6 0.6467 0.3766 -2.8108 13 8 1.1463 1.4018 -2.3984 14 7 -0.2125 0.4155 -3.8485 15 6 -0.5426 1.6963 -4.4785 16 6 0.4280 1.9702 -5.5983 17 1 1.2126 1.2614 -5.8183 18 6 0.3151 3.1263 -6.3411 19 7 -0.6401 3.9896 -6.0728 20 14 1.5187 3.4662 -7.7286 21 1 2.4913 2.3483 -7.8253 22 1 0.7763 3.5891 -9.0089 23 1 2.2455 4.7318 -7.4544 24 6 -0.8164 -0.8229 -4.3464 25 6 -2.1270 -1.0864 -3.6023 26 6 -2.7341 -2.3303 -4.1029 27 7 -3.2008 -3.2917 -4.4896 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.2590 -0.9062 1.9279 32 1 2.4453 -1.7306 0.8823 33 1 2.7697 0.8328 2.4846 34 1 3.8279 -0.5965 2.4437 35 1 5.3354 -0.1954 -1.2865 36 1 4.4138 -1.3708 -0.3204 37 1 3.0775 0.7820 -2.0355 38 1 3.4343 -0.8519 -2.6416 39 1 1.3368 -1.6398 -2.9230 40 1 0.0992 -1.3469 -1.6776 41 1 -1.5558 1.6542 -4.8781 42 1 -0.4770 2.4932 -3.7377 43 1 -0.7197 4.8027 -6.5957 44 1 -1.0175 -0.7257 -5.4132 45 1 -0.1308 -1.6538 -4.1802 46 1 -1.9259 -1.1835 -2.5353 47 1 -2.8126 -0.2554 -3.7685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331881191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = -16.659179 kcal Electronic energy + Delta-G solvation = -29125.464409 eV Core-core repulsion = 25243.273620 eV Total energy + Delta-G solvation = -3882.190789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54662 -38.12061 -36.82578 -35.63141 -35.25805 -33.83348 -32.97247 -31.76355 -30.90759 -29.13363 -27.91157 -26.23503 -24.10146 -24.00340 -22.91928 -22.33230 -20.30430 -18.49973 -17.73818 -17.32139 -16.87053 -16.51808 -16.34871 -16.18501 -15.68980 -15.26086 -14.91269 -14.78240 -14.54116 -14.32604 -13.87563 -13.74316 -13.69813 -13.34270 -12.91847 -12.75551 -12.66628 -12.51193 -12.45453 -12.17339 -12.07725 -11.88776 -11.82640 -11.66162 -11.35588 -11.24667 -11.05204 -11.00197 -10.82956 -10.79390 -10.76050 -10.64678 -10.24891 -10.02501 -9.74462 -9.60945 -8.52555 -8.08916 -7.92916 -7.86718 -6.14208 -4.18839 1.40946 2.66183 2.67829 2.76802 3.15302 3.24620 3.33732 3.36043 3.57018 3.70404 3.86754 4.14301 4.37350 4.66181 4.74680 4.80647 4.88005 5.03032 5.03706 5.09443 5.11187 5.21110 5.22359 5.31293 5.34972 5.41313 5.49060 5.57329 5.68882 5.76185 5.76661 5.79898 5.85491 5.91309 6.01346 6.14220 6.17345 6.29769 6.80584 7.00572 7.28769 7.35844 7.40268 7.53321 7.81635 8.11490 8.17276 8.74571 8.89846 9.47327 10.93801 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.004216 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.401325 B = 6639.541108 C = 8940.591930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.081 3.919 3 H 0.080 0.920 4 C -0.090 4.090 5 C -0.444 4.444 6 S 1.236 4.764 7 O -0.867 6.867 8 C -0.446 4.446 9 C 0.094 3.906 10 N -0.543 5.543 11 C 0.028 3.972 12 C 0.477 3.523 13 O -0.530 6.530 14 N -0.594 5.594 15 C 0.244 3.756 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.116 3.884 25 C -0.050 4.050 26 C 0.216 3.784 27 N -0.444 5.444 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.033 0.967 42 H 0.047 0.953 43 H 0.263 0.737 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 -9.670 11.719 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 H 0.098 0.902 4 C -0.129 4.129 5 C -0.581 4.581 6 S 1.435 4.565 7 O -0.862 6.862 8 C -0.585 4.585 9 C -0.037 4.037 10 N -0.267 5.267 11 C -0.103 4.103 12 C 0.263 3.737 13 O -0.407 6.407 14 N -0.326 5.326 15 C 0.125 3.875 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.722 3.278 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.011 4.011 25 C -0.091 4.091 26 C -0.102 4.102 27 N -0.122 5.122 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.124 0.876 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.246 -9.868 11.509 15.162 hybrid contribution 1.679 -0.556 -0.272 1.789 sum 1.432 -10.424 11.237 15.394 Atomic orbital electron populations 1.22226 0.93994 1.01880 1.03395 1.21713 0.95587 0.96431 0.88937 0.90213 1.21734 0.96111 0.98773 0.96291 1.28116 1.08157 1.08757 1.13092 1.71059 0.95864 0.98802 0.90791 1.93037 1.41606 1.73048 1.78519 1.27825 1.04585 1.14136 1.11939 1.20663 0.86217 1.02081 0.94714 1.58548 1.04294 1.54702 1.09110 1.22536 0.96942 0.95749 0.95055 1.21537 0.79765 0.91746 0.80665 1.90654 1.51315 1.35593 1.63166 1.48347 1.43347 1.08941 1.31983 1.19351 0.95990 0.79029 0.93157 1.21417 1.14482 1.05426 1.15314 0.92400 1.24895 0.95588 0.95815 0.97552 1.69921 1.32054 1.10714 1.40445 0.86502 0.81107 0.78397 0.81757 1.19835 1.21042 1.20872 1.21328 0.91778 0.88099 0.99889 1.19888 0.98673 0.89087 1.01466 1.29114 0.93394 0.94396 0.93310 1.81241 1.09589 1.12144 1.09202 0.91681 0.91052 0.91953 0.91000 0.90006 0.86792 0.90286 0.87367 0.88571 0.90832 0.90153 0.88516 0.87361 0.94910 0.93464 0.92713 0.88782 0.90507 0.87601 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 7.54 37.16 0.28 -1.08 16 2 C 0.08 0.78 1.65 -68.26 -0.11 0.67 16 3 H 0.08 0.83 5.74 -51.36 -0.30 0.54 16 4 C -0.09 -0.75 5.41 -26.46 -0.14 -0.90 16 5 C -0.44 -4.17 6.63 37.94 0.25 -3.92 16 6 S 1.24 14.47 11.47 -107.50 -1.23 13.23 16 7 O -0.87 -15.32 18.14 -35.23 -0.64 -15.96 16 8 C -0.45 -4.92 6.00 38.25 0.23 -4.69 16 9 C 0.09 1.08 4.64 -6.48 -0.03 1.05 16 10 N -0.54 -5.60 3.46 -233.03 -0.81 -6.40 16 11 C 0.03 0.28 3.99 -4.98 -0.02 0.26 16 12 C 0.48 6.95 5.36 -10.98 -0.06 6.89 16 13 O -0.53 -9.59 12.14 5.56 0.07 -9.52 16 14 N -0.59 -9.14 2.46 -175.06 -0.43 -9.57 16 15 C 0.24 5.18 5.16 -5.19 -0.03 5.16 16 16 C -0.53 -13.05 9.39 -34.44 -0.32 -13.37 16 17 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -24.25 13.29 55.43 0.74 -23.52 16 20 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.12 1.28 5.19 -4.04 -0.02 1.26 16 25 C -0.05 -0.42 6.03 -29.52 -0.18 -0.60 16 26 C 0.22 2.28 15.44 -20.74 -0.32 1.96 16 27 N -0.44 -5.99 18.54 42.17 0.78 -5.21 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.76 5.09 -51.93 -0.26 0.50 16 30 H 0.06 0.43 7.01 -51.93 -0.36 0.07 16 31 H 0.07 0.51 7.70 -51.93 -0.40 0.11 16 32 H 0.08 0.71 7.44 -51.93 -0.39 0.32 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.11 1.22 8.14 -51.80 -0.42 0.80 16 36 H 0.10 1.00 7.88 -51.80 -0.41 0.59 16 37 H 0.07 1.02 5.94 -51.93 -0.31 0.71 16 38 H 0.08 0.91 7.84 -51.92 -0.41 0.50 16 39 H 0.10 0.87 6.92 -51.93 -0.36 0.51 16 40 H 0.11 0.83 4.95 -51.93 -0.26 0.57 16 41 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 42 H 0.05 1.16 7.42 -51.93 -0.39 0.77 16 43 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 45 H 0.08 0.68 6.28 -51.93 -0.33 0.35 16 46 H 0.11 0.64 7.41 -51.93 -0.38 0.26 16 47 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -34.40 378.83 -8.45 -42.85 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.04 Total: -1.16 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.57 Total: -5.76 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.28 Total: -44.70 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.57 Total: -25.48 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 14.47 SS G_CDS: -1.23 Total: 13.23 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.40 -8.45 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331881191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.187 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds