Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.36895 * 2 1 4 4 C 1.52005 * 110.42266 * 122.37091 * 2 1 3 5 5 C 1.54482 * 108.53840 * 225.22229 * 4 2 1 6 6 S 1.82351 * 110.15480 * 321.24726 * 5 4 2 7 7 O 1.42100 * 109.47058 * 201.29354 * 6 5 4 8 8 C 1.79581 * 106.37978 * 319.48403 * 6 5 4 9 9 C 1.55066 * 109.79548 * 87.87819 * 8 6 5 10 10 N 1.39618 * 110.25680 * 288.52072 * 9 8 6 11 11 C 1.46894 * 111.30358 * 193.39758 * 10 9 8 12 12 C 1.50703 * 109.46826 * 297.87488 * 11 10 9 13 13 O 1.21277 * 120.00410 * 353.99151 * 12 11 10 14 14 N 1.34779 * 119.99779 * 173.98873 * 12 11 10 15 15 C 1.46502 * 120.00251 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47150 * 90.00129 * 15 14 12 17 17 H 1.07999 * 119.99794 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99761 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99859 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47425 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47216 * 119.99561 * 20 18 16 23 23 H 1.48499 * 109.47143 * 239.99487 * 20 18 16 24 24 C 1.46507 * 119.99961 * 0.02562 * 14 12 11 25 25 C 1.52999 * 109.47124 * 89.99908 * 24 14 12 26 26 C 1.47199 * 109.47436 * 179.97438 * 25 24 14 27 27 N 7.30564 * 49.64246 * 233.75160 * 2 1 3 28 28 H 1.09000 * 109.47300 * 300.00163 * 1 2 3 29 29 H 1.09002 * 109.47240 * 60.00015 * 1 2 3 30 30 H 1.08998 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.62095 * 344.93716 * 4 2 1 32 32 H 1.08999 * 109.62188 * 105.50495 * 4 2 1 33 33 H 1.09002 * 109.35551 * 81.46288 * 5 4 2 34 34 H 1.09008 * 109.34971 * 201.17918 * 5 4 2 35 35 H 1.08995 * 109.41154 * 207.97709 * 8 6 5 36 36 H 1.09000 * 109.41396 * 327.77857 * 8 6 5 37 37 H 1.09000 * 109.37366 * 48.66381 * 9 8 6 38 38 H 1.09010 * 109.36863 * 168.41400 * 9 8 6 39 39 H 1.09002 * 109.47296 * 57.87261 * 11 10 9 40 40 H 1.09000 * 109.47246 * 177.87427 * 11 10 9 41 41 H 1.08993 * 109.47206 * 210.00587 * 15 14 12 42 42 H 1.09001 * 109.46766 * 330.00186 * 15 14 12 43 43 H 0.97005 * 119.99835 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.47164 * 209.99757 * 24 14 12 45 45 H 1.08994 * 109.46997 * 329.99450 * 24 14 12 46 46 H 1.09005 * 109.47306 * 300.00139 * 25 24 14 47 47 H 1.09005 * 109.47172 * 59.99683 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0604 -0.7627 1.2031 5 6 3.1986 0.0617 1.8445 6 16 4.2128 0.8471 0.5485 7 8 5.4904 1.1723 1.0789 8 6 4.3993 -0.3721 -0.7569 9 6 3.2152 -0.2614 -1.7519 10 7 2.0423 -0.7367 -1.1623 11 6 0.9867 -0.9410 -2.1631 12 6 0.6467 0.3766 -2.8108 13 8 1.1463 1.4018 -2.3984 14 7 -0.2125 0.4155 -3.8485 15 6 -0.5426 1.6963 -4.4785 16 6 0.4280 1.9702 -5.5983 17 1 1.2126 1.2614 -5.8183 18 6 0.3151 3.1263 -6.3411 19 7 -0.6401 3.9896 -6.0728 20 14 1.5187 3.4662 -7.7286 21 1 2.4913 2.3483 -7.8253 22 1 0.7763 3.5891 -9.0089 23 1 2.2455 4.7318 -7.4544 24 6 -0.8164 -0.8229 -4.3464 25 6 -2.1270 -1.0864 -3.6023 26 6 -2.7341 -2.3303 -4.1029 27 7 -3.2008 -3.2917 -4.4896 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.2590 -0.9062 1.9279 32 1 2.4453 -1.7306 0.8823 33 1 2.7697 0.8328 2.4846 34 1 3.8279 -0.5965 2.4437 35 1 5.3354 -0.1954 -1.2865 36 1 4.4138 -1.3708 -0.3204 37 1 3.0775 0.7820 -2.0355 38 1 3.4343 -0.8519 -2.6416 39 1 1.3368 -1.6398 -2.9230 40 1 0.0992 -1.3469 -1.6776 41 1 -1.5558 1.6542 -4.8781 42 1 -0.4770 2.4932 -3.7377 43 1 -0.7197 4.8027 -6.5957 44 1 -1.0175 -0.7257 -5.4132 45 1 -0.1308 -1.6538 -4.1802 46 1 -1.9259 -1.1835 -2.5353 47 1 -2.8126 -0.2554 -3.7685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331881191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = -41.248674 kcal Electronic energy + Delta-G solvation = -29126.530689 eV Core-core repulsion = 25243.273620 eV Total energy + Delta-G solvation = -3883.257070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53936 -39.13309 -37.77938 -36.78579 -36.43702 -34.81175 -34.60182 -32.69405 -32.00250 -30.05525 -29.19941 -27.42287 -25.21556 -24.89821 -24.22724 -23.26839 -21.22065 -19.58104 -18.75023 -18.31842 -18.24286 -17.90491 -17.27530 -17.07432 -16.74772 -16.54103 -16.00664 -15.87100 -15.57840 -15.49516 -14.83933 -14.74753 -14.65641 -14.28115 -14.25086 -13.81143 -13.64142 -13.51521 -13.43274 -13.31968 -13.14355 -13.05290 -12.83633 -12.65550 -12.58168 -12.50023 -12.46083 -12.12456 -12.06425 -11.79814 -11.65021 -11.56538 -11.53281 -11.48868 -11.00866 -10.76108 -10.51608 -9.30008 -9.04683 -8.83020 -8.10596 -6.21274 0.48033 1.42189 1.46340 1.54601 1.77610 1.80320 1.94480 2.06008 2.41718 2.54606 2.76077 3.00892 3.20694 3.27483 3.85947 3.92736 3.96849 4.06035 4.18116 4.23367 4.25824 4.34411 4.46072 4.49172 4.59848 4.69487 4.75778 4.80953 4.93002 4.96778 4.96988 5.11318 5.14259 5.15965 5.19799 5.23774 5.31063 5.47694 5.50203 5.57920 5.73007 5.99244 6.15531 6.23652 6.52482 6.71657 6.87828 6.98140 7.44842 7.69214 8.95330 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.004216 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.401325 B = 6639.541108 C = 8940.591930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.071 3.929 3 H 0.066 0.934 4 C -0.081 4.081 5 C -0.429 4.429 6 S 1.230 4.770 7 O -0.934 6.934 8 C -0.432 4.432 9 C 0.097 3.903 10 N -0.535 5.535 11 C 0.035 3.965 12 C 0.474 3.526 13 O -0.571 6.571 14 N -0.598 5.598 15 C 0.261 3.739 16 C -0.530 4.530 17 H 0.053 0.947 18 C 0.014 3.986 19 N -0.925 5.925 20 Si 0.948 3.052 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.288 1.288 24 C 0.112 3.888 25 C -0.038 4.038 26 C 0.246 3.754 27 N -0.495 5.495 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.027 0.973 42 H 0.009 0.991 43 H 0.263 0.737 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.142 0.858 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -12.255 12.724 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.037 4.037 3 H 0.084 0.916 4 C -0.120 4.120 5 C -0.568 4.568 6 S 1.433 4.567 7 O -0.930 6.930 8 C -0.572 4.572 9 C -0.034 4.034 10 N -0.257 5.257 11 C -0.095 4.095 12 C 0.262 3.738 13 O -0.450 6.450 14 N -0.329 5.329 15 C 0.139 3.861 16 C -0.569 4.569 17 H 0.071 0.929 18 C -0.185 4.185 19 N -0.566 5.566 20 Si 0.775 3.225 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.214 1.214 24 C -0.013 4.013 25 C -0.079 4.079 26 C -0.071 4.071 27 N -0.173 5.173 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.135 0.865 40 H 0.162 0.838 41 H 0.045 0.955 42 H 0.027 0.973 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.160 0.840 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.959 -12.482 12.510 17.698 hybrid contribution 1.853 0.226 -0.548 1.946 sum 0.894 -12.256 11.963 17.150 Atomic orbital electron populations 1.22228 0.92773 1.03437 1.02953 1.21862 0.96706 0.95987 0.89142 0.91617 1.21713 0.96054 0.98159 0.96055 1.27966 1.07763 1.09265 1.11825 1.70376 0.94404 1.00131 0.91752 1.92948 1.44115 1.75777 1.80163 1.27630 1.04291 1.14144 1.11139 1.20578 0.87025 1.00687 0.95098 1.58677 1.03858 1.54120 1.09040 1.22729 0.98317 0.92998 0.95477 1.22456 0.78405 0.93077 0.79847 1.90653 1.52518 1.37639 1.64237 1.48203 1.44184 1.08273 1.32245 1.18735 0.94850 0.81205 0.91298 1.21793 1.14487 1.04903 1.15748 0.92903 1.25608 0.97030 0.96075 0.99798 1.70017 1.33682 1.11218 1.41670 0.85657 0.79379 0.77921 0.79563 1.19267 1.20459 1.21396 1.21506 0.93589 0.86958 0.99245 1.19872 0.97021 0.88002 1.02972 1.29261 0.92149 0.93859 0.91829 1.81287 1.11192 1.13923 1.10884 0.90545 0.93240 0.89202 0.88525 0.89585 0.85093 0.90437 0.87962 0.87377 0.93509 0.89525 0.86481 0.83785 0.95460 0.97277 0.92836 0.90499 0.87305 0.84003 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 7.54 71.98 0.54 -1.57 16 2 C 0.07 1.16 1.65 44.60 0.07 1.23 16 3 H 0.07 1.30 5.74 -2.74 -0.02 1.28 16 4 C -0.08 -1.04 5.41 30.77 0.17 -0.88 16 5 C -0.43 -7.12 6.63 72.49 0.48 -6.63 16 6 S 1.23 28.91 11.47 -56.49 -0.65 28.26 16 7 O -0.93 -34.25 18.14 -148.98 -2.70 -36.96 16 8 C -0.43 -9.16 6.00 72.69 0.44 -8.73 16 9 C 0.10 2.11 4.64 88.32 0.41 2.52 16 10 N -0.53 -9.39 3.46 -891.17 -3.08 -12.47 16 11 C 0.04 0.57 3.99 85.56 0.34 0.91 16 12 C 0.47 13.03 5.36 87.66 0.47 13.50 16 13 O -0.57 -20.74 12.14 -3.02 -0.04 -20.78 16 14 N -0.60 -17.60 2.46 -826.16 -2.03 -19.63 16 15 C 0.26 11.26 5.16 85.63 0.44 11.70 16 16 C -0.53 -26.53 9.39 25.60 0.24 -26.29 16 17 H 0.05 2.64 7.81 -2.91 -0.02 2.61 16 18 C 0.01 0.73 5.46 84.65 0.46 1.19 16 19 N -0.93 -51.43 13.29 21.45 0.28 -51.14 16 20 Si 0.95 42.09 29.54 68.60 2.03 44.12 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 C 0.11 2.18 5.19 86.38 0.45 2.63 16 25 C -0.04 -0.51 6.03 28.79 0.17 -0.33 16 26 C 0.25 4.49 15.44 89.44 1.38 5.87 16 27 N -0.49 -12.37 18.54 20.01 0.37 -12.00 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.92 5.09 -2.39 -0.01 0.91 16 30 H 0.09 0.71 7.01 -2.39 -0.02 0.69 16 31 H 0.10 0.87 7.70 -2.39 -0.02 0.85 16 32 H 0.09 1.11 7.44 -2.39 -0.02 1.09 16 33 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.10 2.32 8.14 -2.47 -0.02 2.30 16 36 H 0.11 2.02 7.88 -2.47 -0.02 2.00 16 37 H 0.05 1.31 5.94 -2.39 -0.01 1.30 16 38 H 0.09 1.78 7.84 -2.38 -0.02 1.76 16 39 H 0.12 1.53 6.92 -2.39 -0.02 1.51 16 40 H 0.14 1.36 4.95 -2.39 -0.01 1.34 16 41 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16 42 H 0.01 0.46 7.42 -2.39 -0.02 0.45 16 43 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 44 H 0.08 1.80 8.07 -2.39 -0.02 1.78 16 45 H 0.11 1.45 6.28 -2.39 -0.02 1.43 16 46 H 0.14 0.97 7.41 -2.38 -0.02 0.95 16 47 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -78.79 378.83 1.23 -77.56 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.98 Total: 7.90 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 6.07 Total: -4.87 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -4.46 Total: -95.24 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -2.74 Total: -57.74 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 28.91 SS G_CDS: -0.65 Total: 28.26 kcal Total: -78.79 1.23 -77.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331881191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.313 kcal (2) G-P(sol) polarization free energy of solvation -78.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds