Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.62415 * 2 1 4 4 C 1.52000 * 109.62781 * 120.38420 * 2 1 3 5 5 N 1.46841 * 104.50595 * 226.01801 * 4 2 1 6 6 C 1.46901 * 111.00040 * 134.27296 * 5 4 2 7 7 C 1.50703 * 109.47045 * 284.06145 * 6 5 4 8 8 O 1.21278 * 120.00460 * 354.54715 * 7 6 5 9 9 N 1.34783 * 119.99622 * 174.54277 * 7 6 5 10 10 C 1.46491 * 119.99713 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47553 * 89.99770 * 10 9 7 12 12 H 1.08000 * 119.99526 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00447 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99820 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00035 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47384 * 90.00450 * 15 13 11 17 17 H 1.48504 * 109.47018 * 210.00163 * 15 13 11 18 18 H 1.48493 * 109.47310 * 330.00206 * 15 13 11 19 19 C 1.46499 * 119.99930 * 0.02562 * 9 7 6 20 20 C 1.53005 * 109.46833 * 90.00063 * 19 9 7 21 21 C 1.47202 * 109.47011 * 179.97438 * 20 19 9 22 22 N 8.85302 * 109.86474 * 87.05546 * 2 1 3 23 23 C 1.39454 * 117.27518 * 263.31277 * 5 4 2 24 24 C 1.55075 * 110.08473 * 64.43590 * 23 5 4 25 25 S 1.79579 * 109.79250 * 288.48058 * 24 23 5 26 26 O 1.42108 * 109.47015 * 206.07174 * 25 24 23 27 27 C 1.54483 * 109.62448 * 239.42366 * 2 1 3 28 28 H 1.09004 * 109.47316 * 299.61698 * 1 2 3 29 29 H 1.09000 * 109.47495 * 179.61697 * 1 2 3 30 30 H 1.09004 * 109.47396 * 59.61615 * 1 2 3 31 31 H 1.09003 * 110.42384 * 344.76165 * 4 2 1 32 32 H 1.08994 * 110.42522 * 107.09907 * 4 2 1 33 33 H 1.08996 * 109.47103 * 44.06367 * 6 5 4 34 34 H 1.09000 * 109.46987 * 164.06112 * 6 5 4 35 35 H 1.09000 * 109.47119 * 209.99961 * 10 9 7 36 36 H 1.09003 * 109.47637 * 329.99960 * 10 9 7 37 37 H 0.96998 * 119.99985 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.46986 * 209.99805 * 19 9 7 39 39 H 1.08994 * 109.47561 * 330.00353 * 19 9 7 40 40 H 1.08996 * 109.47124 * 299.99657 * 20 19 9 41 41 H 1.09003 * 109.47067 * 59.99862 * 20 19 9 42 42 H 1.08998 * 109.37126 * 184.62345 * 23 5 4 43 43 H 1.09004 * 109.36882 * 304.37446 * 23 5 4 44 44 H 1.08998 * 109.41979 * 48.58164 * 24 23 5 45 45 H 1.08998 * 109.41751 * 168.38474 * 24 23 5 46 46 H 1.09004 * 109.35410 * 321.74138 * 27 2 1 47 47 H 1.08995 * 109.35566 * 81.32595 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0406 -0.7241 1.2350 5 7 3.0939 0.1508 1.7652 6 6 2.9606 0.3140 3.2190 7 6 1.8263 1.2607 3.5163 8 8 1.2559 1.8276 2.6085 9 7 1.4458 1.4772 4.7910 10 6 0.3429 2.3971 5.0799 11 6 -0.9576 1.6357 5.0866 12 1 -0.9621 0.5728 4.8952 13 6 -2.1417 2.2959 5.3381 14 7 -2.1362 3.5901 5.5717 15 14 -3.7536 1.3520 5.3471 16 1 -4.0281 0.8541 6.7189 17 1 -4.8554 2.2498 4.9167 18 1 -3.6588 0.2017 4.4128 19 6 2.1352 0.7927 5.8876 20 6 3.3116 1.6478 6.3630 21 6 4.0040 0.9604 7.4652 22 7 4.5382 0.4277 8.3152 23 6 4.4100 -0.1487 1.4145 24 6 4.6043 0.0164 -0.1151 25 16 3.7597 -1.3102 -0.9820 26 8 4.3890 -1.5322 -2.2367 27 6 2.0488 -0.7402 -1.2528 28 1 -0.3634 0.5079 0.8934 29 1 -0.3634 -1.0276 -0.0069 30 1 -0.3634 0.5198 -0.8865 31 1 1.2400 -0.8412 1.9655 32 1 2.4512 -1.6965 0.9633 33 1 2.7551 -0.6540 3.6760 34 1 3.8875 0.7184 3.6258 35 1 0.4996 2.8571 6.0556 36 1 0.3061 3.1722 4.3145 37 1 -2.9693 4.0546 5.7483 38 1 1.4408 0.6388 6.7134 39 1 2.5046 -0.1716 5.5388 40 1 4.0060 1.8018 5.5372 41 1 2.9422 2.6122 6.7118 42 1 5.0865 0.5256 1.9397 43 1 4.6341 -1.1775 1.6966 44 1 4.1933 0.9752 -0.4312 45 1 5.6680 -0.0162 -0.3509 46 1 1.4095 -1.5995 -1.4553 47 1 2.0241 -0.0645 -2.1077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331911674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = -24.715089 kcal Electronic energy + Delta-G solvation = -28688.960395 eV Core-core repulsion = 24806.420275 eV Total energy + Delta-G solvation = -3882.540120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88888 -38.25524 -36.81649 -35.71604 -35.15326 -34.80227 -32.92966 -31.20482 -30.84111 -28.29272 -27.25870 -26.76961 -25.46465 -24.02200 -22.74402 -21.45818 -20.35785 -18.54875 -17.64946 -17.44972 -16.75471 -16.49200 -16.23907 -16.10967 -15.77522 -15.36109 -14.82929 -14.74636 -14.47324 -14.21409 -13.95767 -13.66588 -13.54008 -13.25997 -13.05544 -12.83927 -12.75343 -12.45439 -12.37316 -12.30331 -12.26669 -12.12990 -11.83997 -11.56100 -11.32003 -11.21005 -11.01216 -10.93706 -10.88914 -10.71345 -10.63619 -10.58720 -10.20860 -10.05696 -9.72280 -9.04489 -8.49799 -8.27649 -8.07647 -7.82843 -6.11236 -4.15849 1.32997 2.53786 2.69665 2.77486 3.25546 3.30282 3.33886 3.38012 3.44424 3.62974 3.86281 4.24306 4.39468 4.57625 4.71819 4.84879 4.91617 4.95956 4.99968 5.08965 5.16266 5.21726 5.25070 5.28946 5.34747 5.39148 5.47594 5.51011 5.53655 5.78890 5.80228 5.81985 5.85822 5.95755 6.04594 6.23689 6.49692 6.61522 6.82312 7.02645 7.35811 7.36970 7.43969 7.54245 7.85065 8.15418 8.28470 8.84037 9.03282 9.50028 10.96759 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009434 B = 0.003869 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.144469 B = 7236.052980 C = 9647.404825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 H 0.099 0.901 4 C 0.063 3.937 5 N -0.557 5.557 6 C 0.039 3.961 7 C 0.503 3.497 8 O -0.507 6.507 9 N -0.601 5.601 10 C 0.247 3.753 11 C -0.526 4.526 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.118 3.882 20 C -0.051 4.051 21 C 0.216 3.784 22 N -0.446 5.446 23 C 0.118 3.882 24 C -0.451 4.451 25 S 1.221 4.779 26 O -0.868 6.868 27 C -0.435 4.435 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.032 0.968 36 H 0.046 0.954 37 H 0.263 0.737 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.560 -9.242 -4.974 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 H 0.117 0.883 4 C -0.064 4.064 5 N -0.281 5.281 6 C -0.091 4.091 7 C 0.288 3.712 8 O -0.380 6.380 9 N -0.335 5.335 10 C 0.128 3.872 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.009 4.009 20 C -0.092 4.092 21 C -0.102 4.102 22 N -0.124 5.124 23 C -0.013 4.013 24 C -0.590 4.590 25 S 1.422 4.578 26 O -0.863 6.863 27 C -0.573 4.573 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.135 0.865 42 H 0.103 0.897 43 H 0.052 0.948 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.132 0.868 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.261 -10.007 -4.707 16.512 hybrid contribution -1.051 1.086 -1.184 1.919 sum 11.211 -8.921 -5.891 15.491 Atomic orbital electron populations 1.21858 0.94202 1.01166 1.02892 1.21147 0.96583 1.00320 0.89695 0.88291 1.22384 0.93761 0.92515 0.97713 1.57281 1.04271 1.55119 1.11471 1.22169 0.99478 0.99463 0.88038 1.20285 0.84530 0.83371 0.83004 1.90685 1.54704 1.48636 1.44017 1.48244 1.34996 1.46144 1.04093 1.19293 0.82333 0.88453 0.97089 1.21399 0.91410 0.95138 1.48579 0.92418 1.24904 0.99064 0.94821 0.95130 1.69917 1.27487 1.07811 1.48011 0.86558 0.83247 0.79794 0.78178 1.20719 1.21199 1.19872 1.21288 0.92910 0.94063 0.92610 1.19921 0.97312 1.00092 0.91890 1.29164 0.93305 0.93503 0.94199 1.81239 1.10163 1.09788 1.11167 1.20401 0.89302 0.99670 0.91882 1.27868 1.09604 1.16390 1.05125 1.70200 0.86359 1.01387 0.99850 1.93069 1.71884 1.76513 1.44827 1.28248 1.16785 1.07836 1.04388 0.90507 0.93320 0.93382 0.89024 0.92497 0.91402 0.88650 0.95011 0.93618 0.92706 0.88902 0.90749 0.87638 0.86547 0.89692 0.94764 0.87800 0.87389 0.86792 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.87 37.16 0.33 -1.50 16 2 C -0.06 -0.66 2.42 -90.35 -0.22 -0.88 16 3 H 0.10 1.37 7.45 -51.93 -0.39 0.99 16 4 C 0.06 0.62 4.46 -4.37 -0.02 0.60 16 5 N -0.56 -5.56 2.84 -241.18 -0.68 -6.24 16 6 C 0.04 0.39 4.06 -4.97 -0.02 0.37 16 7 C 0.50 7.80 7.20 -10.98 -0.08 7.73 16 8 O -0.51 -10.13 15.41 5.56 0.09 -10.05 16 9 N -0.60 -9.60 2.46 -175.06 -0.43 -10.03 16 10 C 0.25 5.42 5.16 -5.20 -0.03 5.39 16 11 C -0.53 -13.13 9.39 -34.44 -0.32 -13.45 16 12 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -24.64 13.29 55.43 0.74 -23.90 16 15 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.12 1.33 5.19 -4.04 -0.02 1.31 16 20 C -0.05 -0.45 6.03 -29.51 -0.18 -0.62 16 21 C 0.22 2.31 15.44 -20.74 -0.32 1.99 16 22 N -0.45 -6.03 18.54 42.17 0.78 -5.25 16 23 C 0.12 0.88 5.15 -6.56 -0.03 0.85 16 24 C -0.45 -4.00 6.00 38.25 0.23 -3.77 16 25 S 1.22 11.54 11.47 -107.50 -1.23 10.31 16 26 O -0.87 -13.76 18.14 -35.23 -0.64 -14.40 16 27 C -0.43 -4.37 6.06 37.94 0.23 -4.14 16 28 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 29 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.04 6.89 -51.93 -0.36 0.68 16 32 H 0.06 0.36 6.05 -51.44 -0.31 0.05 16 33 H 0.07 0.55 6.94 -51.93 -0.36 0.19 16 34 H 0.10 0.70 6.69 -51.93 -0.35 0.35 16 35 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 36 H 0.05 1.17 7.42 -51.93 -0.39 0.78 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 39 H 0.07 0.64 6.29 -51.93 -0.33 0.32 16 40 H 0.11 0.70 7.39 -51.93 -0.38 0.31 16 41 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 0.57 7.55 -51.93 -0.39 0.18 16 43 H 0.03 0.17 8.11 -51.93 -0.42 -0.25 16 44 H 0.10 1.09 7.89 -51.80 -0.41 0.68 16 45 H 0.11 0.91 8.14 -51.80 -0.42 0.48 16 46 H 0.11 0.98 7.96 -51.93 -0.41 0.56 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -36.03 391.55 -8.46 -44.49 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -7.41 Total: -1.57 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.55 Total: -4.58 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.40 Total: -45.42 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.55 Total: -24.45 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 11.54 SS G_CDS: -1.23 Total: 10.31 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.03 -8.46 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331911674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.774 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds