Wall clock time and date at job start Sat Apr 11 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47118 * 2 1 4 4 N 1.46494 * 109.46613 * 119.99445 * 2 1 3 5 5 S 1.65607 * 119.99893 * 95.70267 * 4 2 1 6 6 O 1.42089 * 106.40033 * 311.06931 * 5 4 2 7 7 O 1.42100 * 106.40162 * 178.15027 * 5 4 2 8 8 C 1.76203 * 107.21731 * 64.61050 * 5 4 2 9 9 C 1.38341 * 120.44935 * 244.08274 * 8 5 4 10 10 C 1.38838 * 118.50435 * 180.26221 * 9 8 5 11 11 C 1.38066 * 119.32907 * 359.75068 * 10 9 8 12 12 N 1.31944 * 120.85035 * 359.97438 * 11 10 9 13 13 C 1.32421 * 121.62659 * 0.02562 * 12 11 10 14 14 N 1.39011 * 119.70514 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99878 * 354.88233 * 14 13 12 16 16 C 1.53001 * 109.47157 * 185.31099 * 15 14 13 17 17 C 1.53006 * 109.47016 * 297.42785 * 16 15 14 18 18 C 1.52997 * 109.46937 * 57.42395 * 16 15 14 19 19 C 1.50695 * 109.47343 * 177.42340 * 16 15 14 20 20 H 1.08000 * 119.99774 * 0.02562 * 19 16 15 21 21 C 1.37875 * 120.00081 * 179.97438 * 19 16 15 22 22 N 1.31511 * 120.00054 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99842 * 180.02562 * 21 19 16 24 24 H 1.48496 * 109.47332 * 60.00794 * 23 21 19 25 25 H 1.48507 * 109.46726 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47217 * 299.99928 * 23 21 19 27 27 H 1.09005 * 109.46774 * 64.82560 * 1 2 3 28 28 H 1.09000 * 109.47208 * 184.82182 * 1 2 3 29 29 H 1.09001 * 109.47542 * 304.82846 * 1 2 3 30 30 H 1.08996 * 109.47148 * 239.99820 * 2 1 3 31 31 H 1.08996 * 109.47234 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47005 * 299.99794 * 3 2 1 33 33 H 1.09002 * 109.47221 * 59.99448 * 3 2 1 34 34 H 0.97005 * 120.00256 * 275.70033 * 4 2 1 35 35 H 1.08004 * 120.74716 * 359.97438 * 9 8 5 36 36 H 1.08003 * 120.33593 * 179.72516 * 10 9 8 37 37 H 1.07998 * 119.57445 * 180.02562 * 11 10 9 38 38 H 0.96993 * 119.99907 * 174.87792 * 14 13 12 39 39 H 1.09000 * 109.47159 * 65.31324 * 15 14 13 40 40 H 1.08998 * 109.47423 * 305.31256 * 15 14 13 41 41 H 1.09001 * 109.47257 * 59.99583 * 17 16 15 42 42 H 1.08997 * 109.46967 * 179.97438 * 17 16 15 43 43 H 1.09002 * 109.47002 * 299.99705 * 17 16 15 44 44 H 1.09003 * 109.47238 * 65.51868 * 18 16 15 45 45 H 1.08999 * 109.47218 * 185.52117 * 18 16 15 46 46 H 1.09005 * 109.47331 * 305.52195 * 18 16 15 47 47 H 0.97006 * 120.00220 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0182 -0.6905 1.1962 5 16 2.4285 -2.2930 1.1178 6 8 1.3473 -2.9529 0.4740 7 8 2.8986 -2.6506 2.4102 8 6 3.8098 -2.4252 0.0318 9 6 3.7022 -3.1235 -1.1576 10 6 4.8174 -3.2068 -1.9803 11 6 5.9908 -2.5907 -1.5932 12 7 6.0629 -1.9265 -0.4554 13 6 5.0216 -1.8244 0.3561 14 7 5.1422 -1.1152 1.5457 15 6 6.4446 -0.5806 1.9508 16 6 6.3312 0.0355 3.3467 17 6 5.3484 1.2076 3.3086 18 6 5.8264 -1.0215 4.3310 19 6 7.6845 0.5287 3.7896 20 1 8.5399 0.4147 3.1402 21 6 7.8305 1.1265 5.0234 22 7 6.7888 1.2659 5.8140 23 14 9.5079 1.7386 5.5721 24 1 9.9975 2.7643 4.6165 25 1 9.3977 2.3364 6.9271 26 1 10.4619 0.6013 5.6095 27 1 -0.3633 0.4372 -0.9301 28 1 -0.3633 -1.0240 0.0864 29 1 -0.3634 0.5869 0.8436 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 2.1012 -0.2091 2.0343 35 1 2.7728 -3.5972 -1.4376 36 1 4.7677 -3.7483 -2.9134 37 1 6.8607 -2.6526 -2.2304 38 1 4.3641 -0.9743 2.1073 39 1 6.7603 0.1839 1.2409 40 1 7.1788 -1.3860 1.9677 41 1 4.3696 0.8507 2.9882 42 1 5.2673 1.6461 4.3032 43 1 5.7081 1.9606 2.6073 44 1 6.5725 -1.8097 4.4322 45 1 5.6521 -0.5593 5.3027 46 1 4.8949 -1.4486 3.9595 47 1 6.8915 1.6862 6.6822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413405796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:25 Heat of formation + Delta-G solvation = -44.146791 kcal Electronic energy + Delta-G solvation = -29629.741314 eV Core-core repulsion = 25746.358572 eV Total energy + Delta-G solvation = -3883.382742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.16295 -37.50955 -37.14527 -36.60770 -35.80921 -34.19782 -32.50855 -31.42280 -30.68420 -29.22116 -27.29882 -25.73438 -25.67179 -24.91787 -23.93880 -22.25897 -21.64670 -19.74337 -18.82888 -18.25738 -17.58095 -17.21031 -16.54014 -16.00512 -15.81773 -15.10466 -14.80273 -14.58936 -14.53352 -14.38907 -13.92358 -13.56265 -13.41438 -13.13025 -12.95061 -12.87271 -12.73827 -12.35181 -12.22441 -12.04827 -11.94491 -11.66426 -11.59114 -11.53310 -11.22910 -11.15382 -11.05700 -10.93870 -10.72840 -10.48657 -10.19966 -10.15636 -10.01160 -9.78238 -9.51280 -9.35730 -9.31946 -8.78577 -8.39562 -7.69615 -6.01950 -4.12156 0.41952 0.86546 1.50753 2.94632 3.29156 3.33990 3.34738 3.42596 3.64829 3.87195 4.37077 4.38705 4.59064 4.62726 4.79554 4.89827 4.95976 5.09913 5.24899 5.26941 5.32501 5.47078 5.49081 5.66492 5.68668 5.76135 5.94635 6.01902 6.11656 6.13640 6.15724 6.27523 6.46158 6.52663 6.74880 6.82535 6.89330 6.98222 7.05044 7.21748 7.41772 7.51248 7.57171 7.70355 8.00614 8.10300 8.26705 8.39196 8.87464 9.53269 10.99840 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.003995 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.726191 B = 7006.242898 C = 7890.575568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.150 3.850 3 C -0.161 4.161 4 N -1.117 6.117 5 S 2.695 3.305 6 O -0.963 6.963 7 O -0.952 6.952 8 C -0.811 4.811 9 C 0.064 3.936 10 C -0.272 4.272 11 C 0.207 3.793 12 N -0.544 5.544 13 C 0.493 3.507 14 N -0.694 5.694 15 C 0.137 3.863 16 C 0.054 3.946 17 C -0.131 4.131 18 C -0.136 4.136 19 C -0.507 4.507 20 H 0.057 0.943 21 C 0.067 3.933 22 N -0.884 5.884 23 Si 0.894 3.106 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.419 0.581 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.159 0.841 38 H 0.405 0.595 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.002 0.998 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.082 0.918 46 H 0.017 0.983 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.537 -3.246 -14.907 18.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.044 3.956 3 C -0.220 4.220 4 N -0.878 5.878 5 S 2.785 3.215 6 O -0.953 6.953 7 O -0.941 6.941 8 C -0.907 4.907 9 C 0.037 3.963 10 C -0.296 4.296 11 C 0.044 3.956 12 N -0.262 5.262 13 C 0.251 3.749 14 N -0.321 5.321 15 C 0.015 3.985 16 C 0.053 3.947 17 C -0.189 4.189 18 C -0.193 4.193 19 C -0.546 4.546 20 H 0.075 0.925 21 C -0.134 4.134 22 N -0.522 5.522 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.255 0.745 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.245 0.755 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.021 0.979 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.101 0.899 46 H 0.036 0.964 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.053 -3.399 -14.025 17.588 hybrid contribution 0.559 0.411 0.116 0.703 sum -9.494 -2.988 -13.910 17.104 Atomic orbital electron populations 1.22336 0.94884 1.03432 1.02393 1.20702 0.94473 0.94317 0.86148 1.22118 1.02292 0.94740 1.02826 1.55782 1.81782 1.31237 1.18972 1.01788 0.73743 0.72357 0.73643 1.93535 1.51787 1.72555 1.77437 1.93658 1.81769 1.80981 1.37741 1.30802 1.17998 1.23339 1.18604 1.21025 0.98695 0.87854 0.88771 1.21787 0.95000 1.09402 1.03390 1.22798 0.96638 0.86113 0.90054 1.67436 1.29782 1.23029 1.05971 1.17814 0.87196 0.84014 0.85873 1.45685 1.14388 1.53984 1.18017 1.21858 0.81100 0.97297 0.98275 1.18402 0.96050 0.92162 0.88051 1.21859 0.94740 0.98968 1.03307 1.21868 0.96914 0.97742 1.02814 1.20885 0.93120 1.38807 1.01744 0.92479 1.24874 0.96603 0.95551 0.96395 1.69811 1.28884 1.43674 1.09847 0.86628 0.84426 0.79071 0.77660 1.20337 1.21340 1.20309 0.91571 0.91142 0.91943 0.90006 0.91599 0.91294 0.91575 0.74518 0.83646 0.84630 0.82353 0.75530 0.92356 0.92021 0.97938 0.89336 0.95321 0.95253 0.89917 0.96387 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.52 37.16 0.35 -1.18 16 2 C 0.15 1.51 3.39 -67.93 -0.23 1.28 16 3 C -0.16 -1.49 9.45 37.16 0.35 -1.14 16 4 N -1.12 -13.34 4.91 -4.89 -0.02 -13.37 16 5 S 2.70 39.71 4.89 -107.50 -0.53 39.18 16 6 O -0.96 -14.82 16.34 -57.18 -0.93 -15.75 16 7 O -0.95 -17.39 16.52 -57.18 -0.94 -18.33 16 8 C -0.81 -12.09 5.75 -39.23 -0.23 -12.32 16 9 C 0.06 0.79 9.66 -39.32 -0.38 0.41 16 10 C -0.27 -2.98 10.10 -39.42 -0.40 -3.38 16 11 C 0.21 2.58 11.17 -17.57 -0.20 2.38 16 12 N -0.54 -8.94 9.57 -12.44 -0.12 -9.06 16 13 C 0.49 8.42 7.44 -155.01 -1.15 7.27 16 14 N -0.69 -12.87 4.81 -60.43 -0.29 -13.16 16 15 C 0.14 2.86 4.53 -4.04 -0.02 2.84 16 16 C 0.05 1.26 0.51 -155.66 -0.08 1.19 16 17 C -0.13 -2.91 8.10 37.16 0.30 -2.61 16 18 C -0.14 -3.27 8.05 37.16 0.30 -2.97 16 19 C -0.51 -13.16 8.01 -34.44 -0.28 -13.43 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.07 1.77 5.15 -17.82 -0.09 1.67 16 22 N -0.88 -23.59 9.42 55.43 0.52 -23.07 16 23 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.72 7.66 -51.93 -0.40 0.32 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.78 7.83 -51.93 -0.41 0.37 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.42 4.69 8.84 -34.48 -0.30 4.39 16 35 H 0.15 1.51 7.43 -52.48 -0.39 1.12 16 36 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.40 7.33 3.30 -40.82 -0.13 7.20 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.00 0.03 6.92 -51.93 -0.36 -0.33 16 42 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 2.15 6.24 -51.93 -0.32 1.82 16 46 H 0.02 0.40 6.67 -51.93 -0.35 0.05 16 47 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -31.16 384.55 -10.46 -41.62 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.17 Total: 10.56 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.74 Total: -20.00 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.09 Total: -58.66 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.88 Total: -34.08 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 39.71 SS G_CDS: -0.53 Total: 39.18 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.16 -10.46 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413405796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.532 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds