Wall clock time and date at job start Sat Apr 11 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.38676 * 2 1 4 4 C 1.55297 * 109.43116 * 240.12929 * 2 1 3 5 5 C 1.45385 * 109.85364 * 168.68338 * 4 2 1 6 6 N 1.46828 * 115.63742 * 63.58625 * 5 4 2 7 7 C 1.46905 * 111.00133 * 142.13385 * 6 5 4 8 8 C 1.50703 * 109.47413 * 189.99891 * 7 6 5 9 9 O 1.21284 * 119.99364 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00044 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00016 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.46941 * 89.99983 * 11 10 8 13 13 H 1.08001 * 119.99795 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99615 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99615 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00016 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47158 * 90.00424 * 16 14 12 18 18 H 1.48508 * 109.46810 * 209.99818 * 16 14 12 19 19 H 1.48496 * 109.47341 * 330.00029 * 16 14 12 20 20 C 1.46499 * 120.00180 * 0.02562 * 10 8 7 21 21 C 1.52994 * 109.47374 * 89.99546 * 20 10 8 22 22 C 1.47199 * 109.47105 * 179.97438 * 21 20 10 23 23 N 9.41398 * 153.86653 * 249.88155 * 2 1 3 24 24 C 1.45582 * 105.38038 * 262.37648 * 6 5 4 25 25 C 1.54644 * 108.47705 * 107.72417 * 24 6 5 26 26 S 1.79401 * 109.43067 * 119.87014 * 2 1 3 27 27 O 1.42094 * 109.47237 * 88.53347 * 26 2 1 28 28 H 1.09005 * 109.47299 * 179.86920 * 1 2 3 29 29 H 1.09003 * 109.47162 * 299.87139 * 1 2 3 30 30 H 1.09005 * 109.47078 * 59.87215 * 1 2 3 31 31 H 1.09004 * 109.40569 * 288.80531 * 4 2 1 32 32 H 1.09001 * 109.40217 * 48.56959 * 4 2 1 33 33 H 1.09000 * 108.24902 * 185.17937 * 5 4 2 34 34 H 1.08995 * 108.25232 * 302.18166 * 5 4 2 35 35 H 1.09003 * 109.46932 * 309.99995 * 7 6 5 36 36 H 1.08999 * 109.47099 * 69.99327 * 7 6 5 37 37 H 1.09001 * 109.47091 * 210.00097 * 11 10 8 38 38 H 1.09004 * 109.46861 * 330.00093 * 11 10 8 39 39 H 0.96997 * 120.00224 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46848 * 210.00156 * 20 10 8 41 41 H 1.08999 * 109.46962 * 329.99559 * 20 10 8 42 42 H 1.08994 * 109.47591 * 300.00525 * 21 20 10 43 43 H 1.09007 * 109.46750 * 60.00187 * 21 20 10 44 44 H 1.09001 * 109.64137 * 227.42638 * 24 6 5 45 45 H 1.09004 * 109.63429 * 347.82547 * 24 6 5 46 46 H 1.09007 * 109.25894 * 81.53860 * 25 24 6 47 47 H 1.08998 * 109.26416 * 201.02868 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0466 -0.7294 -1.2700 5 6 3.4753 -0.5065 -1.4206 6 7 4.3197 -1.0519 -0.3503 7 6 5.5723 -1.5948 -0.8930 8 6 6.2971 -2.3591 0.1848 9 8 5.8172 -2.4436 1.2954 10 7 7.4780 -2.9494 -0.0858 11 6 8.1830 -3.6919 0.9620 12 6 7.7436 -5.1333 0.9385 13 1 7.0127 -5.4633 0.2151 14 6 8.2747 -6.0307 1.8406 15 7 7.8917 -7.2886 1.8198 16 14 9.5383 -5.4596 3.0923 17 1 8.8448 -5.0102 4.3261 18 1 10.4531 -6.5827 3.4198 19 1 10.3215 -4.3322 2.5260 20 6 8.0574 -2.8477 -1.4276 21 6 8.9504 -1.6079 -1.5049 22 6 9.5330 -1.5061 -2.8529 23 7 9.9815 -1.4262 -3.8935 24 6 4.5802 0.0669 0.5440 25 6 3.7700 -0.1458 1.8439 26 16 2.1267 -0.8426 1.4671 27 8 2.2520 -2.2321 1.1973 28 1 -0.3634 -1.0277 -0.0023 29 1 -0.3633 0.5118 0.8912 30 1 -0.3633 0.5158 -0.8889 31 1 1.8545 -1.7983 -1.1770 32 1 1.5255 -0.3438 -2.1462 33 1 3.7923 -0.9496 -2.3646 34 1 3.6493 0.5682 -1.4747 35 1 5.3485 -2.2631 -1.7245 36 1 6.2011 -0.7765 -1.2437 37 1 9.2573 -3.6366 0.7865 38 1 7.9508 -3.2571 1.9343 39 1 8.2656 -7.9200 2.4541 40 1 8.6520 -3.7374 -1.6349 41 1 7.2574 -2.7658 -2.1634 42 1 8.3558 -0.7183 -1.2975 43 1 9.7504 -1.6899 -0.7690 44 1 5.6440 0.1088 0.7781 45 1 4.2736 0.9972 0.0658 46 1 4.3104 -0.8318 2.4963 47 1 3.6465 0.8109 2.3513 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429580445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:31 Heat of formation + Delta-G solvation = -13.785072 kcal Electronic energy + Delta-G solvation = -28880.677174 eV Core-core repulsion = 24998.611015 eV Total energy + Delta-G solvation = -3882.066159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.87755 -38.28530 -36.90641 -35.33947 -35.09372 -34.57415 -32.78895 -31.06964 -31.02906 -30.13095 -28.15506 -25.97220 -24.05963 -23.55748 -22.58526 -21.93720 -20.82369 -18.58948 -17.77213 -17.12951 -16.82574 -16.71806 -16.41340 -16.08442 -15.39535 -14.96650 -14.77206 -14.68654 -14.30809 -14.16858 -13.89895 -13.78160 -13.69777 -13.46489 -13.03473 -12.84732 -12.62226 -12.55478 -12.49448 -12.31289 -12.21892 -11.90975 -11.72996 -11.58873 -11.51898 -11.38754 -11.14082 -11.10380 -10.96551 -10.83098 -10.55019 -10.53445 -10.19109 -9.57032 -9.54488 -9.09070 -8.58360 -8.50776 -7.86129 -7.77813 -6.07005 -4.06306 1.87192 2.62901 2.70789 3.02284 3.23806 3.28007 3.32771 3.34916 3.41218 3.80790 4.12086 4.19074 4.39169 4.55895 4.76255 4.79909 4.83170 4.91370 4.98916 5.03787 5.09632 5.15696 5.24348 5.27228 5.29028 5.35553 5.47310 5.48632 5.61262 5.63514 5.68423 5.71336 5.75114 5.79092 5.95265 5.99384 6.15746 6.31133 6.55940 6.79535 6.85711 6.91876 7.24829 7.47208 7.59926 8.12213 8.47283 8.92472 8.99204 9.52124 11.06591 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.003954 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.441247 B = 7080.135920 C = 9016.524613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.436 4.436 3 H 0.104 0.896 4 C -0.102 4.102 5 C 0.032 3.968 6 N -0.501 5.501 7 C 0.036 3.964 8 C 0.509 3.491 9 O -0.502 6.502 10 N -0.596 5.596 11 C 0.218 3.782 12 C -0.530 4.530 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.876 3.124 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.118 3.882 21 C -0.050 4.050 22 C 0.215 3.785 23 N -0.442 5.442 24 C 0.055 3.945 25 C -0.436 4.436 26 S 1.261 4.739 27 O -0.807 6.807 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.030 0.970 38 H 0.038 0.962 39 H 0.264 0.736 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.116 0.884 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.116 0.884 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.885 21.924 -3.132 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.551 4.551 3 H 0.122 0.878 4 C -0.140 4.140 5 C -0.095 4.095 6 N -0.225 5.225 7 C -0.095 4.095 8 C 0.295 3.705 9 O -0.375 6.375 10 N -0.330 5.330 11 C 0.098 3.902 12 C -0.568 4.568 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.009 4.009 21 C -0.092 4.092 22 C -0.103 4.103 23 N -0.119 5.119 24 C -0.074 4.074 25 C -0.573 4.573 26 S 1.455 4.545 27 O -0.802 6.802 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.134 0.866 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.135 0.865 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.145 20.698 -3.240 23.730 hybrid contribution 2.482 0.389 -1.191 2.780 sum -8.662 21.087 -4.430 23.224 Atomic orbital electron populations 1.21338 0.91746 1.02296 1.02370 1.27933 1.03139 1.09426 1.14585 0.87750 1.20491 0.94399 1.02292 0.96841 1.21153 0.95183 0.98209 0.95003 1.62868 1.14829 1.29572 1.15259 1.22263 0.90831 0.98954 0.97500 1.20092 0.80970 0.80184 0.89290 1.90690 1.64192 1.59247 1.23344 1.47879 1.21009 1.52723 1.11359 1.19676 0.91399 0.92359 0.86755 1.21323 1.25572 0.91182 1.18759 0.90685 1.24860 0.96466 0.94740 0.96891 1.69896 1.43471 1.02959 1.37035 0.86872 0.81696 0.78531 0.82650 1.19927 1.21133 1.19095 1.21304 0.97066 0.96757 0.85765 1.19899 1.00986 1.02036 0.86231 1.29062 0.93352 0.93107 0.94756 1.81219 1.09606 1.08774 1.12308 1.22438 1.00749 0.91000 0.93189 1.28253 1.17640 1.08868 1.02497 1.70357 0.95359 0.88476 1.00336 1.93188 1.82204 1.24406 1.80368 0.92382 0.91513 0.92266 0.90006 0.91144 0.91727 0.93538 0.88149 0.92184 0.95167 0.94422 0.92558 0.88470 0.90607 0.87830 0.86621 0.91731 0.92641 0.86510 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.17 37.15 0.34 -0.47 16 2 C -0.44 -3.73 2.65 -25.52 -0.07 -3.79 16 3 H 0.10 0.67 7.98 -51.78 -0.41 0.26 16 4 C -0.10 -1.10 4.94 -29.10 -0.14 -1.24 16 5 C 0.03 0.35 4.77 -7.45 -0.04 0.32 16 6 N -0.50 -7.09 3.08 -240.68 -0.74 -7.83 16 7 C 0.04 0.50 3.60 -4.97 -0.02 0.48 16 8 C 0.51 9.69 7.18 -10.99 -0.08 9.61 16 9 O -0.50 -11.85 14.29 5.55 0.08 -11.77 16 10 N -0.60 -11.01 2.46 -175.06 -0.43 -11.44 16 11 C 0.22 4.98 4.23 -5.19 -0.02 4.95 16 12 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 13 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 14 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 16 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 20 C 0.12 1.58 5.17 -4.05 -0.02 1.56 16 21 C -0.05 -0.50 6.03 -29.52 -0.18 -0.67 16 22 C 0.22 2.53 15.43 -20.76 -0.32 2.21 16 23 N -0.44 -6.38 18.54 42.15 0.78 -5.59 16 24 C 0.06 0.66 4.58 -3.67 -0.02 0.64 16 25 C -0.44 -5.04 6.67 38.02 0.25 -4.79 16 26 S 1.26 14.00 12.39 -107.50 -1.33 12.67 16 27 O -0.81 -15.42 16.46 -35.23 -0.58 -16.00 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 1.17 7.38 -51.93 -0.38 0.79 16 32 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.06 0.67 7.36 -51.93 -0.38 0.29 16 34 H 0.05 0.41 6.45 -51.93 -0.33 0.08 16 35 H 0.10 1.35 7.03 -51.93 -0.37 0.99 16 36 H 0.06 0.63 7.05 -51.93 -0.37 0.26 16 37 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 38 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.10 1.41 8.07 -51.93 -0.42 1.00 16 41 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 42 H 0.10 0.81 7.22 -51.93 -0.38 0.44 16 43 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.83 7.07 -51.93 -0.37 0.47 16 45 H 0.06 0.50 6.42 -51.93 -0.33 0.16 16 46 H 0.12 1.82 7.33 -51.92 -0.38 1.44 16 47 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 384.20 15.07 5.79 5.79 Total: -1.00 -41.19 384.20 -8.38 -49.57 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.31 Total: -0.41 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.75 Total: -4.48 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.38 Total: -51.88 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.50 Total: -27.77 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 14.00 SS G_CDS: -1.33 Total: 12.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -41.19 -8.38 -49.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429580445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.780 kcal (2) G-P(sol) polarization free energy of solvation -41.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds