Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.38676 * 2 1 4 4 C 1.55297 * 109.43116 * 240.12929 * 2 1 3 5 5 C 1.45385 * 109.85364 * 168.68338 * 4 2 1 6 6 N 1.46828 * 115.63742 * 63.58625 * 5 4 2 7 7 C 1.46905 * 111.00133 * 142.13385 * 6 5 4 8 8 C 1.50703 * 109.47413 * 189.99891 * 7 6 5 9 9 O 1.21284 * 119.99364 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00044 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00016 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.46941 * 89.99983 * 11 10 8 13 13 H 1.08001 * 119.99795 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99615 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99615 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00016 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47158 * 90.00424 * 16 14 12 18 18 H 1.48508 * 109.46810 * 209.99818 * 16 14 12 19 19 H 1.48496 * 109.47341 * 330.00029 * 16 14 12 20 20 C 1.46499 * 120.00180 * 0.02562 * 10 8 7 21 21 C 1.52994 * 109.47374 * 89.99546 * 20 10 8 22 22 C 1.47199 * 109.47105 * 179.97438 * 21 20 10 23 23 N 9.41398 * 153.86653 * 249.88155 * 2 1 3 24 24 C 1.45582 * 105.38038 * 262.37648 * 6 5 4 25 25 C 1.54644 * 108.47705 * 107.72417 * 24 6 5 26 26 S 1.79401 * 109.43067 * 119.87014 * 2 1 3 27 27 O 1.42094 * 109.47237 * 88.53347 * 26 2 1 28 28 H 1.09005 * 109.47299 * 179.86920 * 1 2 3 29 29 H 1.09003 * 109.47162 * 299.87139 * 1 2 3 30 30 H 1.09005 * 109.47078 * 59.87215 * 1 2 3 31 31 H 1.09004 * 109.40569 * 288.80531 * 4 2 1 32 32 H 1.09001 * 109.40217 * 48.56959 * 4 2 1 33 33 H 1.09000 * 108.24902 * 185.17937 * 5 4 2 34 34 H 1.08995 * 108.25232 * 302.18166 * 5 4 2 35 35 H 1.09003 * 109.46932 * 309.99995 * 7 6 5 36 36 H 1.08999 * 109.47099 * 69.99327 * 7 6 5 37 37 H 1.09001 * 109.47091 * 210.00097 * 11 10 8 38 38 H 1.09004 * 109.46861 * 330.00093 * 11 10 8 39 39 H 0.96997 * 120.00224 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46848 * 210.00156 * 20 10 8 41 41 H 1.08999 * 109.46962 * 329.99559 * 20 10 8 42 42 H 1.08994 * 109.47591 * 300.00525 * 21 20 10 43 43 H 1.09007 * 109.46750 * 60.00187 * 21 20 10 44 44 H 1.09001 * 109.64137 * 227.42638 * 24 6 5 45 45 H 1.09004 * 109.63429 * 347.82547 * 24 6 5 46 46 H 1.09007 * 109.25894 * 81.53860 * 25 24 6 47 47 H 1.08998 * 109.26416 * 201.02868 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0466 -0.7294 -1.2700 5 6 3.4753 -0.5065 -1.4206 6 7 4.3197 -1.0519 -0.3503 7 6 5.5723 -1.5948 -0.8930 8 6 6.2971 -2.3591 0.1848 9 8 5.8172 -2.4436 1.2954 10 7 7.4780 -2.9494 -0.0858 11 6 8.1830 -3.6919 0.9620 12 6 7.7436 -5.1333 0.9385 13 1 7.0127 -5.4633 0.2151 14 6 8.2747 -6.0307 1.8406 15 7 7.8917 -7.2886 1.8198 16 14 9.5383 -5.4596 3.0923 17 1 8.8448 -5.0102 4.3261 18 1 10.4531 -6.5827 3.4198 19 1 10.3215 -4.3322 2.5260 20 6 8.0574 -2.8477 -1.4276 21 6 8.9504 -1.6079 -1.5049 22 6 9.5330 -1.5061 -2.8529 23 7 9.9815 -1.4262 -3.8935 24 6 4.5802 0.0669 0.5440 25 6 3.7700 -0.1458 1.8439 26 16 2.1267 -0.8426 1.4671 27 8 2.2520 -2.2321 1.1973 28 1 -0.3634 -1.0277 -0.0023 29 1 -0.3633 0.5118 0.8912 30 1 -0.3633 0.5158 -0.8889 31 1 1.8545 -1.7983 -1.1770 32 1 1.5255 -0.3438 -2.1462 33 1 3.7923 -0.9496 -2.3646 34 1 3.6493 0.5682 -1.4747 35 1 5.3485 -2.2631 -1.7245 36 1 6.2011 -0.7765 -1.2437 37 1 9.2573 -3.6366 0.7865 38 1 7.9508 -3.2571 1.9343 39 1 8.2656 -7.9200 2.4541 40 1 8.6520 -3.7374 -1.6349 41 1 7.2574 -2.7658 -2.1634 42 1 8.3558 -0.7183 -1.2975 43 1 9.7504 -1.6899 -0.7690 44 1 5.6440 0.1088 0.7781 45 1 4.2736 0.9972 0.0658 46 1 4.3104 -0.8318 2.4963 47 1 3.6465 0.8109 2.3513 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429580445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = -46.471963 kcal Electronic energy + Delta-G solvation = -28882.094584 eV Core-core repulsion = 24998.611015 eV Total energy + Delta-G solvation = -3883.483569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14251 -39.37120 -37.99742 -36.71284 -36.27550 -35.44330 -34.83598 -32.42932 -31.99872 -31.05662 -29.72303 -27.22131 -25.28557 -24.32620 -24.15077 -22.98659 -21.72437 -19.99404 -19.21048 -18.53172 -18.06830 -17.94112 -17.47799 -17.18360 -16.60318 -16.35497 -15.87921 -15.70602 -15.61254 -15.26772 -15.01707 -14.80961 -14.66669 -14.49230 -14.34144 -14.13162 -13.95268 -13.78408 -13.60548 -13.46768 -13.34350 -13.13315 -12.93926 -12.74357 -12.69470 -12.44532 -12.31803 -12.26479 -12.01829 -11.95730 -11.94004 -11.75288 -11.73100 -11.32924 -10.81482 -10.58105 -10.54457 -9.51171 -9.39957 -8.73111 -8.31642 -6.37133 1.01486 1.33226 1.39132 1.46431 1.63963 1.79468 1.82498 2.17340 2.20226 2.32889 2.86091 3.03559 3.13316 3.27799 3.68326 3.75890 3.91845 3.98294 4.03086 4.06554 4.13375 4.25323 4.28988 4.44924 4.48933 4.53085 4.63816 4.70971 4.75442 4.80619 4.82277 4.91785 4.95157 4.96746 5.03594 5.07706 5.13892 5.32065 5.36115 5.44797 5.49309 5.59899 5.87810 6.04246 6.26522 6.55764 6.65872 6.69053 7.24057 7.49501 8.86280 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.003954 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.441247 B = 7080.135920 C = 9016.524613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.419 4.419 3 H 0.146 0.854 4 C -0.105 4.105 5 C 0.028 3.972 6 N -0.542 5.542 7 C 0.046 3.954 8 C 0.499 3.501 9 O -0.558 6.558 10 N -0.599 5.599 11 C 0.228 3.772 12 C -0.537 4.537 13 H 0.019 0.981 14 C 0.004 3.996 15 N -0.952 5.952 16 Si 0.951 3.049 17 H -0.279 1.279 18 H -0.280 1.280 19 H -0.224 1.224 20 C 0.112 3.888 21 C -0.034 4.034 22 C 0.244 3.756 23 N -0.488 5.488 24 C 0.050 3.950 25 C -0.434 4.434 26 S 1.287 4.713 27 O -0.903 6.903 28 H 0.034 0.966 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.023 0.977 39 H 0.266 0.734 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.053 0.947 45 H 0.100 0.900 46 H 0.068 0.932 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 27.161 -3.828 29.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.537 4.537 3 H 0.164 0.836 4 C -0.144 4.144 5 C -0.099 4.099 6 N -0.267 5.267 7 C -0.085 4.085 8 C 0.286 3.714 9 O -0.435 6.435 10 N -0.332 5.332 11 C 0.106 3.894 12 C -0.575 4.575 13 H 0.037 0.963 14 C -0.193 4.193 15 N -0.593 5.593 16 Si 0.773 3.227 17 H -0.205 1.205 18 H -0.206 1.206 19 H -0.146 1.146 20 C -0.013 4.013 21 C -0.074 4.074 22 C -0.073 4.073 23 N -0.166 5.166 24 C -0.078 4.078 25 C -0.572 4.572 26 S 1.485 4.515 27 O -0.898 6.898 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.071 0.929 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.352 25.948 -3.981 28.219 hybrid contribution 2.086 -1.235 -1.059 2.645 sum -8.266 24.713 -5.040 26.542 Atomic orbital electron populations 1.21441 0.90227 1.01642 1.04812 1.27762 1.04293 1.10384 1.11221 0.83636 1.20544 0.95243 0.99710 0.98903 1.21246 0.94376 1.00190 0.94063 1.62761 1.15302 1.31484 1.17142 1.22196 0.91390 0.99817 0.95066 1.21122 0.80622 0.79793 0.89814 1.90673 1.65419 1.61419 1.26025 1.47858 1.21163 1.51833 1.12311 1.19334 0.93154 0.89055 0.87887 1.21650 1.24064 0.94502 1.17317 0.96278 1.25965 0.99263 0.94586 0.99453 1.70086 1.45764 1.04792 1.38627 0.85674 0.78741 0.79383 0.78855 1.20451 1.20587 1.14633 1.21496 0.98129 0.98169 0.83502 1.19818 1.00972 1.01239 0.85421 1.29159 0.92105 0.91641 0.94405 1.81266 1.11257 1.10358 1.13756 1.22611 1.00246 0.91990 0.92974 1.28237 1.16472 1.09945 1.02518 1.69103 0.94739 0.85972 1.01663 1.93071 1.83914 1.29561 1.83283 0.94697 0.88401 0.90500 0.94932 0.88645 0.91502 0.89767 0.88059 0.87396 0.92046 0.95920 0.92483 0.90010 0.88660 0.84441 0.85218 0.92861 0.88242 0.91280 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.17 71.98 0.66 -0.66 16 2 C -0.42 -5.88 2.65 31.38 0.08 -5.80 16 3 H 0.15 0.95 7.98 -2.48 -0.02 0.93 16 4 C -0.11 -2.07 4.94 29.06 0.14 -1.93 16 5 C 0.03 0.53 4.77 84.00 0.40 0.93 16 6 N -0.54 -14.54 3.08 -915.36 -2.82 -17.36 16 7 C 0.05 1.21 3.60 85.56 0.31 1.52 16 8 C 0.50 19.11 7.18 87.66 0.63 19.74 16 9 O -0.56 -27.64 14.29 -3.04 -0.04 -27.68 16 10 N -0.60 -21.90 2.46 -826.15 -2.03 -23.93 16 11 C 0.23 10.39 4.23 85.63 0.36 10.75 16 12 C -0.54 -31.75 9.94 25.60 0.25 -31.50 16 13 H 0.02 1.29 8.06 -2.91 -0.02 1.27 16 14 C 0.00 0.27 5.47 84.66 0.46 0.73 16 15 N -0.95 -62.17 13.96 21.45 0.30 -61.87 16 16 Si 0.95 44.13 27.47 68.60 1.88 46.01 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.22 -8.79 6.54 99.48 0.65 -8.14 16 20 C 0.11 2.81 5.17 86.38 0.45 3.26 16 21 C -0.03 -0.54 6.03 28.79 0.17 -0.36 16 22 C 0.24 4.98 15.43 89.44 1.38 6.36 16 23 N -0.49 -13.08 18.54 20.01 0.37 -12.71 16 24 C 0.05 1.05 4.58 87.11 0.40 1.45 16 25 C -0.43 -9.50 6.67 72.54 0.48 -9.01 16 26 S 1.29 28.46 12.39 -56.49 -0.70 27.76 16 27 O -0.90 -37.42 16.46 -148.98 -2.45 -39.87 16 28 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.03 0.97 7.38 -2.38 -0.02 0.95 16 32 H 0.10 1.38 8.11 -2.39 -0.02 1.36 16 33 H 0.07 1.20 7.36 -2.39 -0.02 1.19 16 34 H 0.08 0.96 6.45 -2.39 -0.02 0.95 16 35 H 0.10 2.62 7.03 -2.39 -0.02 2.60 16 36 H 0.11 1.76 7.05 -2.39 -0.02 1.74 16 37 H 0.06 2.43 7.13 -2.39 -0.02 2.41 16 38 H 0.02 1.12 6.85 -2.39 -0.02 1.10 16 39 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 40 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 41 H 0.10 2.03 6.44 -2.39 -0.02 2.01 16 42 H 0.14 1.39 7.22 -2.39 -0.02 1.37 16 43 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.05 1.23 7.07 -2.39 -0.02 1.21 16 45 H 0.10 1.15 6.42 -2.39 -0.02 1.14 16 46 H 0.07 2.26 7.33 -2.38 -0.02 2.24 16 47 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -103.06 384.20 1.62 -101.45 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.92 Total: 12.73 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 6.19 Total: -4.54 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -4.17 Total: -115.86 kcal Atomic # 8 Polarization: -65.06 SS G_CDS: -2.50 Total: -67.55 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Atomic # 16 Polarization: 28.46 SS G_CDS: -0.70 Total: 27.76 kcal Total: -103.06 1.62 -101.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429580445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.975 kcal (2) G-P(sol) polarization free energy of solvation -103.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds