Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 120.00061 * 2 1 4 4 S 1.81399 * 109.47149 * 115.00287 * 3 2 1 5 5 C 1.81398 * 102.99936 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46839 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47074 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00154 * 179.97438 * 7 6 5 9 9 O 1.21348 * 119.99768 * 0.02562 * 8 7 6 10 10 C 1.49450 * 120.00032 * 180.02562 * 8 7 6 11 11 O 1.21356 * 119.99981 * 353.51350 * 10 8 7 12 12 N 1.34774 * 120.00149 * 173.78998 * 10 8 7 13 13 C 1.47074 * 120.88489 * 180.82986 * 12 10 8 14 14 C 1.53700 * 108.27666 * 128.75482 * 13 12 10 15 15 N 1.46902 * 109.25471 * 54.08571 * 14 13 12 16 16 C 1.46896 * 110.99756 * 172.60834 * 15 14 13 17 17 C 1.50697 * 109.47435 * 294.29945 * 16 15 14 18 18 H 1.08007 * 119.99537 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00581 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99931 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 119.99627 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47001 * 90.00553 * 21 19 17 23 23 H 1.48501 * 109.47306 * 210.00124 * 21 19 17 24 24 H 1.48501 * 109.47536 * 330.00180 * 21 19 17 25 25 C 1.46893 * 111.26804 * 296.75687 * 15 14 13 26 26 C 1.47082 * 120.87694 * 1.11057 * 12 10 8 27 27 H 1.08001 * 120.00412 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99676 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00147 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47341 * 355.00466 * 3 2 1 31 31 H 1.08996 * 109.47104 * 235.00441 * 3 2 1 32 32 H 1.08997 * 109.47394 * 60.00338 * 5 4 3 33 33 H 1.08996 * 109.47148 * 299.99990 * 5 4 3 34 34 H 1.09003 * 109.47166 * 60.00596 * 6 5 4 35 35 H 1.09001 * 109.47490 * 300.00017 * 6 5 4 36 36 H 0.97003 * 119.99969 * 0.02562 * 7 6 5 37 37 H 1.08996 * 109.63545 * 248.52272 * 13 12 10 38 38 H 1.09000 * 109.62802 * 9.11122 * 13 12 10 39 39 H 1.09001 * 109.64614 * 294.08434 * 14 13 12 40 40 H 1.09001 * 109.41940 * 173.95105 * 14 13 12 41 41 H 1.09000 * 109.47800 * 54.30221 * 16 15 14 42 42 H 1.09008 * 109.46958 * 174.30245 * 16 15 14 43 43 H 0.97005 * 119.99164 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.49533 * 303.14448 * 25 15 14 45 45 H 1.08999 * 109.49656 * 183.06504 * 25 15 14 46 46 H 1.08992 * 109.62979 * 350.89963 * 26 12 10 47 47 H 1.09003 * 109.62769 * 111.48017 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 16 2.9919 1.4673 1.5500 5 6 3.8176 3.0718 1.3650 6 6 4.6564 3.3604 2.6117 7 7 5.3238 4.6560 2.4621 8 6 6.1210 5.1207 3.4444 9 8 6.2863 4.4659 4.4525 10 6 6.8014 6.4426 3.2920 11 8 6.7320 7.0430 2.2396 12 7 7.4966 6.9654 4.3215 13 6 8.1585 8.2730 4.1988 14 6 7.7351 9.1416 5.3941 15 7 8.0158 8.4186 6.6418 16 6 7.7899 9.2789 7.8108 17 6 8.7917 10.4047 7.8071 18 1 9.5228 10.4743 7.0152 19 6 8.7751 11.3458 8.8147 20 7 9.6491 12.3285 8.8110 21 14 7.5102 11.2257 10.1839 22 1 8.0599 10.4084 11.2952 23 1 7.1896 12.5872 10.6825 24 1 6.2755 10.5860 9.6627 25 6 7.2216 7.1863 6.7337 26 6 7.6187 6.2404 5.5954 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 -0.0895 31 1 2.7556 1.3251 -0.8418 32 1 3.0686 3.8539 1.2416 33 1 4.4658 3.0480 0.4890 34 1 5.4056 2.5783 2.7346 35 1 4.0086 3.3841 3.4880 36 1 5.1913 5.1796 1.6564 37 1 9.2401 8.1381 4.2053 38 1 7.8521 8.7528 3.2693 39 1 6.6686 9.3574 5.3308 40 1 8.2971 10.0755 5.3806 41 1 6.7813 9.6901 7.7701 42 1 7.9065 8.6919 8.7219 43 1 9.6370 12.9908 9.5198 44 1 6.1621 7.4294 6.6517 45 1 7.4109 6.7021 7.6917 46 1 6.9553 5.3756 5.5895 47 1 8.6494 5.9138 5.7335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602240148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = -39.638315 kcal Electronic energy + Delta-G solvation = -26578.140262 eV Core-core repulsion = 22694.953023 eV Total energy + Delta-G solvation = -3883.187239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.10868 -40.10062 -39.05516 -37.02633 -35.84690 -35.67996 -34.41120 -32.19333 -31.96127 -30.66330 -28.43587 -27.79780 -26.12631 -24.70584 -23.82872 -23.07838 -22.04651 -20.97924 -20.67491 -19.13134 -18.64238 -18.27577 -17.46111 -17.34957 -17.07099 -16.50838 -16.45205 -16.20982 -16.13697 -16.02021 -15.71315 -15.46119 -15.10744 -15.01935 -14.85750 -14.49611 -14.39628 -14.18189 -13.76221 -13.46245 -13.31540 -13.12286 -12.89161 -12.83820 -12.77777 -12.44607 -12.27605 -12.18369 -12.14072 -11.93982 -11.84234 -11.47058 -11.21959 -10.78339 -10.48831 -10.27362 -10.21864 -9.95347 -9.09454 -8.72821 -8.28219 -6.31652 0.20773 0.22072 1.14557 1.35428 1.36266 1.45545 1.46550 1.78194 2.00200 2.34156 2.39238 3.04210 3.14924 3.18726 3.53682 3.82559 3.82699 3.90686 3.99944 4.03282 4.17513 4.26820 4.32563 4.36915 4.43336 4.49638 4.61615 4.63822 4.64359 4.76941 4.77954 4.81459 4.92705 4.95684 4.99404 5.06209 5.19046 5.32334 5.51372 5.64883 5.72000 5.82726 5.94425 6.15138 6.27149 6.57016 6.59953 6.74334 6.80570 7.32017 8.87916 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.001692 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.591810 B =16540.942570 C =17090.073957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.162 4.162 3 C -0.050 4.050 4 S -0.276 6.276 5 C -0.095 4.095 6 C 0.136 3.864 7 N -0.681 5.681 8 C 0.518 3.482 9 O -0.519 6.519 10 C 0.504 3.496 11 O -0.547 6.547 12 N -0.576 5.576 13 C 0.122 3.878 14 C 0.056 3.944 15 N -0.541 5.541 16 C 0.171 3.829 17 C -0.517 4.517 18 H 0.043 0.957 19 C 0.011 3.989 20 N -0.946 5.946 21 Si 0.945 3.055 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.254 1.254 25 C 0.039 3.961 26 C 0.070 3.930 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.422 0.578 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.023 0.977 40 H 0.077 0.923 41 H -0.015 1.015 42 H 0.033 0.967 43 H 0.267 0.733 44 H 0.026 0.974 45 H 0.094 0.906 46 H 0.162 0.838 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.922 -24.850 -19.372 36.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C -0.198 4.198 4 S -0.047 6.047 5 C -0.244 4.244 6 C 0.013 3.987 7 N -0.335 5.335 8 C 0.299 3.701 9 O -0.397 6.397 10 C 0.287 3.713 11 O -0.426 6.426 12 N -0.309 5.309 13 C -0.001 4.001 14 C -0.073 4.073 15 N -0.265 5.265 16 C 0.044 3.956 17 C -0.555 4.555 18 H 0.061 0.939 19 C -0.187 4.187 20 N -0.586 5.586 21 Si 0.769 3.231 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.178 1.178 25 C -0.090 4.090 26 C -0.051 4.051 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.136 0.864 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.261 0.739 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.041 0.959 40 H 0.096 0.904 41 H 0.003 0.997 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.112 0.888 46 H 0.178 0.822 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.209 -25.671 -18.274 35.903 hybrid contribution -0.862 2.002 -0.431 2.222 sum -18.071 -23.669 -18.705 35.165 Atomic orbital electron populations 1.24166 0.95502 1.03315 0.97104 1.22450 0.96132 0.96832 1.02701 1.22530 1.01271 1.00014 0.95938 1.87327 1.61246 1.26627 1.29540 1.23456 1.02185 0.97594 1.01147 1.21117 0.96016 0.83814 0.97769 1.45662 1.45608 1.21667 1.20584 1.19926 0.80157 0.86188 0.83799 1.90367 1.62552 1.58577 1.28250 1.20171 0.80290 0.86803 0.84032 1.90731 1.62212 1.62274 1.27335 1.48223 1.48544 1.20183 1.13905 1.21945 0.97792 0.81894 0.98442 1.22347 0.98247 0.97368 0.89303 1.61850 1.55893 1.06409 1.02395 1.19950 0.93936 0.91724 0.89961 1.21242 1.15683 1.08667 1.09912 0.93910 1.25796 0.97738 0.94606 1.00552 1.70047 1.38011 1.15454 1.35109 0.85743 0.80047 0.77806 0.79489 1.18905 1.20857 1.17834 1.22581 0.94716 0.91449 1.00241 1.23359 1.05553 0.96640 0.79551 0.86712 0.87633 0.86442 0.88640 0.88018 0.87713 0.87519 0.90067 0.90250 0.73941 0.89843 0.88186 0.95858 0.90419 0.99703 0.94880 0.92442 0.95569 0.88756 0.82235 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 14.32 67.78 0.97 -0.05 16 2 C -0.16 -1.29 9.52 25.65 0.24 -1.05 16 3 C -0.05 -0.38 6.38 71.24 0.45 0.08 16 4 S -0.28 -3.29 21.72 -56.49 -1.23 -4.52 16 5 C -0.10 -0.78 6.05 71.98 0.44 -0.35 16 6 C 0.14 1.74 5.68 86.38 0.49 2.23 16 7 N -0.68 -10.50 5.55 -464.40 -2.58 -13.07 16 8 C 0.52 11.65 7.81 87.27 0.68 12.34 16 9 O -0.52 -13.23 13.03 -3.24 -0.04 -13.27 16 10 C 0.50 13.64 7.77 87.27 0.68 14.32 16 11 O -0.55 -16.17 15.95 -3.26 -0.05 -16.22 16 12 N -0.58 -16.92 3.00 -818.63 -2.46 -19.38 16 13 C 0.12 3.84 6.62 86.51 0.57 4.41 16 14 C 0.06 2.15 5.47 86.54 0.47 2.62 16 15 N -0.54 -22.06 4.62 -898.88 -4.15 -26.22 16 16 C 0.17 8.13 3.79 85.56 0.32 8.46 16 17 C -0.52 -29.48 8.96 25.60 0.23 -29.25 16 18 H 0.04 2.70 7.37 -2.91 -0.02 2.68 16 19 C 0.01 0.62 5.47 84.65 0.46 1.08 16 20 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 21 Si 0.95 43.80 27.47 68.60 1.88 45.68 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 25 C 0.04 1.27 5.62 86.38 0.49 1.75 16 26 C 0.07 1.98 6.35 86.35 0.55 2.53 16 27 H 0.11 0.49 8.06 -2.91 -0.02 0.47 16 28 H 0.11 0.53 7.84 -2.91 -0.02 0.51 16 29 H 0.12 0.92 8.06 -2.91 -0.02 0.90 16 30 H 0.10 0.54 7.79 -2.39 -0.02 0.52 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.42 5.21 7.96 -92.71 -0.74 4.47 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.10 3.00 7.07 -2.39 -0.02 2.98 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 3.37 6.67 -2.39 -0.02 3.35 16 41 H -0.01 -0.71 7.18 -2.39 -0.02 -0.72 16 42 H 0.03 1.53 7.40 -2.38 -0.02 1.51 16 43 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 44 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.09 2.87 7.99 -2.39 -0.02 2.85 16 46 H 0.16 4.28 3.93 -74.93 -0.29 3.99 16 47 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -69.81 394.78 -1.38 -71.20 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.11 Total: 15.02 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 7.05 Total: 19.12 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -8.89 Total: -117.01 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.09 Total: -29.49 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -1.23 Total: -4.52 kcal Total: -69.81 -1.38 -71.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602240148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.557 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds