Wall clock time and date at job start Sat Apr 11 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.69612 * 2 1 4 4 C 1.54255 * 110.78989 * 236.47395 * 2 1 3 5 5 C 1.52329 * 112.58990 * 217.19731 * 4 2 1 6 6 H 1.08999 * 108.75500 * 120.74495 * 5 4 2 7 7 N 1.46507 * 108.86761 * 239.18263 * 5 4 2 8 8 C 1.34777 * 119.99566 * 209.53171 * 7 5 4 9 9 O 1.21342 * 120.00463 * 359.97438 * 8 7 5 10 10 C 1.49448 * 119.99694 * 180.02562 * 8 7 5 11 11 O 1.21351 * 120.00093 * 6.47398 * 10 8 7 12 12 N 1.34777 * 120.00034 * 186.47986 * 10 8 7 13 13 C 1.47079 * 120.88220 * 178.41947 * 12 10 8 14 14 C 1.53237 * 108.52381 * 231.20554 * 13 12 10 15 15 N 1.46903 * 109.33866 * 306.16872 * 14 13 12 16 16 C 1.46893 * 111.00265 * 187.25041 * 15 14 13 17 17 C 1.50701 * 109.47163 * 170.00082 * 16 15 14 18 18 H 1.07991 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99624 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00461 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99710 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47405 * 89.99924 * 21 19 17 23 23 H 1.48500 * 109.47122 * 209.99853 * 21 19 17 24 24 H 1.48506 * 109.47142 * 329.99737 * 21 19 17 25 25 C 1.46900 * 111.26509 * 63.10351 * 15 14 13 26 26 C 1.47080 * 120.88167 * 358.43851 * 12 10 8 27 27 C 1.54257 * 112.58921 * 359.97438 * 5 4 2 28 28 S 1.83955 * 110.78844 * 123.31227 * 2 1 3 29 29 H 1.09004 * 109.47188 * 298.13681 * 1 2 3 30 30 H 1.08992 * 109.47478 * 58.14349 * 1 2 3 31 31 H 1.08999 * 109.46895 * 178.13844 * 1 2 3 32 32 H 1.09002 * 108.86648 * 96.37366 * 4 2 1 33 33 H 1.09000 * 108.86932 * 338.02054 * 4 2 1 34 34 H 0.96993 * 120.00117 * 29.52984 * 7 5 4 35 35 H 1.08999 * 109.63132 * 111.49108 * 13 12 10 36 36 H 1.09001 * 109.62857 * 350.91347 * 13 12 10 37 37 H 1.08999 * 109.49305 * 186.21215 * 14 13 12 38 38 H 1.08996 * 109.51307 * 66.14144 * 14 13 12 39 39 H 1.09000 * 109.47161 * 49.99854 * 16 15 14 40 40 H 1.09000 * 109.47132 * 290.00142 * 16 15 14 41 41 H 0.97002 * 120.00406 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.50032 * 56.85879 * 25 15 14 43 43 H 1.08998 * 109.49213 * 176.93663 * 25 15 14 44 44 H 1.08996 * 109.63093 * 248.50642 * 26 12 10 45 45 H 1.09001 * 109.62685 * 8.88881 * 26 12 10 46 46 H 1.08995 * 110.78887 * 142.79708 * 27 5 4 47 47 H 1.08995 * 110.79274 * 266.06985 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0197 0.0000 4 6 2.0775 -0.7965 -1.2022 5 6 3.3326 -1.5878 -0.8571 6 1 3.1419 -2.6451 -1.0413 7 7 4.4254 -1.1459 -1.7271 8 6 5.4074 -2.0052 -2.0647 9 8 5.3866 -3.1445 -1.6478 10 6 6.5225 -1.5543 -2.9516 11 8 6.6086 -0.3871 -3.2723 12 7 7.4324 -2.4440 -3.3954 13 6 8.5176 -2.0280 -4.2968 14 6 8.5345 -2.9699 -5.5055 15 7 8.6141 -4.3602 -5.0377 16 6 8.8055 -5.2843 -6.1634 17 6 9.1267 -6.6589 -5.6358 18 1 9.1827 -6.8291 -4.5709 19 6 9.3492 -7.6992 -6.5129 20 7 9.2805 -7.4921 -7.8098 21 14 9.7466 -9.4033 -5.8590 22 1 8.4869 -10.1650 -5.6641 23 1 10.6114 -10.1176 -6.8322 24 1 10.4577 -9.2820 -4.5609 25 6 7.4284 -4.7265 -4.2516 26 6 7.3662 -3.8567 -2.9915 27 6 3.7618 -1.4065 0.6134 28 16 2.1829 -0.9445 1.4372 29 1 -0.3634 0.4846 0.9062 30 1 -0.3634 0.5423 -0.8728 31 1 -0.3633 -1.0271 -0.0334 32 1 2.3097 -0.1015 -2.0092 33 1 1.3085 -1.4878 -1.5467 34 1 4.4422 -0.2351 -2.0601 35 1 9.4717 -2.0873 -3.7731 36 1 8.3436 -1.0055 -4.6319 37 1 9.4000 -2.7459 -6.1291 38 1 7.6224 -2.8332 -6.0863 39 1 9.6280 -4.9328 -6.7863 40 1 7.8926 -5.3273 -6.7574 41 1 9.4367 -8.2241 -8.4269 42 1 6.5315 -4.5654 -4.8494 43 1 7.4917 -5.7765 -3.9658 44 1 8.2096 -4.0918 -2.3423 45 1 6.4326 -4.0423 -2.4606 46 1 4.1515 -2.3394 1.0205 47 1 4.4983 -0.6083 0.7058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602276840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:11 Heat of formation + Delta-G solvation = -39.601388 kcal Electronic energy + Delta-G solvation = -27754.810290 eV Core-core repulsion = 23871.624652 eV Total energy + Delta-G solvation = -3883.185638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11826 -39.19748 -37.66992 -37.38161 -34.72168 -33.98446 -32.42067 -31.20999 -30.82217 -28.46300 -27.43049 -26.21739 -24.74490 -23.45990 -23.09012 -21.79697 -20.92159 -20.82910 -19.47302 -17.74067 -17.58850 -16.86648 -16.37531 -16.22899 -16.06610 -15.29155 -15.12634 -15.03834 -14.76779 -14.49902 -14.29252 -14.23164 -14.10305 -13.77124 -13.53568 -13.33451 -12.89172 -12.75303 -12.53473 -12.37233 -12.08399 -11.95648 -11.72871 -11.58988 -11.39108 -11.28610 -11.07560 -10.85463 -10.75434 -10.61529 -10.55255 -10.54022 -9.93201 -9.67918 -9.29834 -9.07451 -8.64558 -8.46880 -8.17858 -7.34230 -6.06592 -4.08421 1.24416 1.31152 1.75512 2.19119 3.05692 3.29965 3.35499 3.36483 3.40733 3.84637 4.07380 4.14934 4.27323 4.39142 4.42339 4.60308 4.76840 4.83651 4.89030 5.09904 5.22345 5.25731 5.28626 5.29349 5.31601 5.40249 5.43678 5.55070 5.60135 5.63642 5.72069 5.80773 5.91852 6.19669 6.24830 6.39538 6.51125 6.59607 6.75543 7.20257 7.25750 7.30642 7.56495 7.73916 7.86697 8.00601 8.11160 8.46895 8.98877 9.56146 11.04203 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.002193 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.473838 B =12766.200675 C =13559.308042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.038 4.038 3 H 0.099 0.901 4 C -0.134 4.134 5 C 0.141 3.859 6 H 0.111 0.889 7 N -0.700 5.700 8 C 0.514 3.486 9 O -0.500 6.500 10 C 0.502 3.498 11 O -0.537 6.537 12 N -0.567 5.567 13 C 0.113 3.887 14 C 0.042 3.958 15 N -0.537 5.537 16 C 0.193 3.807 17 C -0.509 4.509 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.052 3.948 26 C 0.055 3.945 27 C -0.078 4.078 28 S -0.285 6.285 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.413 0.587 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.027 0.973 39 H 0.032 0.968 40 H -0.009 1.009 41 H 0.262 0.738 42 H 0.022 0.978 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.148 0.852 46 H 0.114 0.886 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.406 16.875 14.409 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 H 0.117 0.883 4 C -0.174 4.174 5 C 0.035 3.965 6 H 0.129 0.871 7 N -0.354 5.354 8 C 0.296 3.704 9 O -0.376 6.376 10 C 0.284 3.716 11 O -0.416 6.416 12 N -0.299 5.299 13 C -0.009 4.009 14 C -0.088 4.088 15 N -0.262 5.262 16 C 0.068 3.932 17 C -0.547 4.547 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.077 4.077 26 C -0.065 4.065 27 C -0.227 4.227 28 S -0.058 6.058 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.250 0.750 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.009 0.991 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.116 0.884 44 H 0.092 0.908 45 H 0.165 0.835 46 H 0.132 0.868 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.380 16.276 15.774 27.391 hybrid contribution 0.252 -0.307 -1.677 1.723 sum -15.129 15.969 14.097 26.127 Atomic orbital electron populations 1.21702 0.91322 1.03478 1.02804 1.23871 0.99651 1.00647 0.92463 0.88255 1.22391 0.96779 0.99828 0.98355 1.21760 0.85211 1.01913 0.87659 0.87144 1.46134 1.23643 1.15807 1.49835 1.20430 0.83238 0.85394 0.81306 1.90404 1.75669 1.18011 1.53488 1.19826 0.83410 0.86053 0.82305 1.90730 1.75315 1.17046 1.58467 1.48199 1.26277 1.10368 1.45024 1.21965 0.89222 0.98955 0.90753 1.22392 1.00791 0.90704 0.94906 1.62130 1.37137 1.00928 1.26050 1.19729 0.95789 0.90610 0.87030 1.21137 1.47410 0.92787 0.93407 0.91760 1.24997 0.95554 0.99273 0.94798 1.69955 1.49995 1.32374 1.01425 0.86488 0.78278 0.83866 0.78742 1.20707 1.21271 1.19718 1.22343 0.91389 1.00494 0.93438 1.23488 1.07411 0.77273 0.98378 1.24659 0.96769 1.06079 0.95241 1.88215 1.22041 1.69235 1.26336 0.91594 0.90950 0.91148 0.89450 0.88804 0.74953 0.90180 0.89175 0.89782 0.95521 0.95037 0.99132 0.92884 0.95962 0.88352 0.90759 0.83546 0.86771 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.59 9.23 37.16 0.34 -0.25 16 2 C -0.04 -0.20 3.93 -26.07 -0.10 -0.31 16 3 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -0.71 5.72 -26.42 -0.15 -0.86 16 5 C 0.14 1.04 2.96 -67.61 -0.20 0.84 16 6 H 0.11 0.95 7.45 -51.93 -0.39 0.56 16 7 N -0.70 -6.03 4.88 -53.93 -0.26 -6.29 16 8 C 0.51 6.18 7.78 -11.59 -0.09 6.09 16 9 O -0.50 -6.80 12.63 5.50 0.07 -6.73 16 10 C 0.50 7.11 7.77 -11.59 -0.09 7.02 16 11 O -0.54 -8.18 15.95 5.50 0.09 -8.09 16 12 N -0.57 -8.64 3.01 -172.97 -0.52 -9.16 16 13 C 0.11 1.70 6.59 -3.60 -0.02 1.68 16 14 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 15 N -0.54 -11.27 4.62 -235.77 -1.09 -12.36 16 16 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 17 C -0.51 -13.98 8.41 -34.44 -0.29 -14.27 16 18 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 21 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.05 1.00 5.46 -3.70 -0.02 0.98 16 26 C 0.06 0.88 6.36 -3.60 -0.02 0.85 16 27 C -0.08 -0.61 7.09 37.82 0.27 -0.34 16 28 S -0.28 -2.32 22.74 -107.50 -2.44 -4.77 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.33 8.06 -51.93 -0.42 -0.08 16 32 H 0.09 0.37 7.47 -51.93 -0.39 -0.02 16 33 H 0.09 0.45 7.72 -51.93 -0.40 0.05 16 34 H 0.41 3.06 7.76 -40.82 -0.32 2.75 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.27 7.07 -51.93 -0.37 0.91 16 37 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 40 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.15 2.25 3.91 -56.56 -0.22 2.03 16 46 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 LS Contribution 383.88 15.07 5.79 5.79 Total: -1.00 -31.29 383.88 -10.59 -41.88 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.41 Total: 0.53 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.52 Total: 8.51 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -1.14 Total: -53.45 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.16 Total: -14.82 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.44 Total: -4.77 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.29 -10.59 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602276840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.274 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds