Wall clock time and date at job start Sat Apr 11 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.69612 * 2 1 4 4 C 1.54255 * 110.78989 * 236.47395 * 2 1 3 5 5 C 1.52329 * 112.58990 * 217.19731 * 4 2 1 6 6 H 1.08999 * 108.75500 * 120.74495 * 5 4 2 7 7 N 1.46507 * 108.86761 * 239.18263 * 5 4 2 8 8 C 1.34777 * 119.99566 * 209.53171 * 7 5 4 9 9 O 1.21342 * 120.00463 * 359.97438 * 8 7 5 10 10 C 1.49448 * 119.99694 * 180.02562 * 8 7 5 11 11 O 1.21351 * 120.00093 * 6.47398 * 10 8 7 12 12 N 1.34777 * 120.00034 * 186.47986 * 10 8 7 13 13 C 1.47079 * 120.88220 * 178.41947 * 12 10 8 14 14 C 1.53237 * 108.52381 * 231.20554 * 13 12 10 15 15 N 1.46903 * 109.33866 * 306.16872 * 14 13 12 16 16 C 1.46893 * 111.00265 * 187.25041 * 15 14 13 17 17 C 1.50701 * 109.47163 * 170.00082 * 16 15 14 18 18 H 1.07991 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99624 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00461 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99710 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47405 * 89.99924 * 21 19 17 23 23 H 1.48500 * 109.47122 * 209.99853 * 21 19 17 24 24 H 1.48506 * 109.47142 * 329.99737 * 21 19 17 25 25 C 1.46900 * 111.26509 * 63.10351 * 15 14 13 26 26 C 1.47080 * 120.88167 * 358.43851 * 12 10 8 27 27 C 1.54257 * 112.58921 * 359.97438 * 5 4 2 28 28 S 1.83955 * 110.78844 * 123.31227 * 2 1 3 29 29 H 1.09004 * 109.47188 * 298.13681 * 1 2 3 30 30 H 1.08992 * 109.47478 * 58.14349 * 1 2 3 31 31 H 1.08999 * 109.46895 * 178.13844 * 1 2 3 32 32 H 1.09002 * 108.86648 * 96.37366 * 4 2 1 33 33 H 1.09000 * 108.86932 * 338.02054 * 4 2 1 34 34 H 0.96993 * 120.00117 * 29.52984 * 7 5 4 35 35 H 1.08999 * 109.63132 * 111.49108 * 13 12 10 36 36 H 1.09001 * 109.62857 * 350.91347 * 13 12 10 37 37 H 1.08999 * 109.49305 * 186.21215 * 14 13 12 38 38 H 1.08996 * 109.51307 * 66.14144 * 14 13 12 39 39 H 1.09000 * 109.47161 * 49.99854 * 16 15 14 40 40 H 1.09000 * 109.47132 * 290.00142 * 16 15 14 41 41 H 0.97002 * 120.00406 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.50032 * 56.85879 * 25 15 14 43 43 H 1.08998 * 109.49213 * 176.93663 * 25 15 14 44 44 H 1.08996 * 109.63093 * 248.50642 * 26 12 10 45 45 H 1.09001 * 109.62685 * 8.88881 * 26 12 10 46 46 H 1.08995 * 110.78887 * 142.79708 * 27 5 4 47 47 H 1.08995 * 110.79274 * 266.06985 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0197 0.0000 4 6 2.0775 -0.7965 -1.2022 5 6 3.3326 -1.5878 -0.8571 6 1 3.1419 -2.6451 -1.0413 7 7 4.4254 -1.1459 -1.7271 8 6 5.4074 -2.0052 -2.0647 9 8 5.3866 -3.1445 -1.6478 10 6 6.5225 -1.5543 -2.9516 11 8 6.6086 -0.3871 -3.2723 12 7 7.4324 -2.4440 -3.3954 13 6 8.5176 -2.0280 -4.2968 14 6 8.5345 -2.9699 -5.5055 15 7 8.6141 -4.3602 -5.0377 16 6 8.8055 -5.2843 -6.1634 17 6 9.1267 -6.6589 -5.6358 18 1 9.1827 -6.8291 -4.5709 19 6 9.3492 -7.6992 -6.5129 20 7 9.2805 -7.4921 -7.8098 21 14 9.7466 -9.4033 -5.8590 22 1 8.4869 -10.1650 -5.6641 23 1 10.6114 -10.1176 -6.8322 24 1 10.4577 -9.2820 -4.5609 25 6 7.4284 -4.7265 -4.2516 26 6 7.3662 -3.8567 -2.9915 27 6 3.7618 -1.4065 0.6134 28 16 2.1829 -0.9445 1.4372 29 1 -0.3634 0.4846 0.9062 30 1 -0.3634 0.5423 -0.8728 31 1 -0.3633 -1.0271 -0.0334 32 1 2.3097 -0.1015 -2.0092 33 1 1.3085 -1.4878 -1.5467 34 1 4.4422 -0.2351 -2.0601 35 1 9.4717 -2.0873 -3.7731 36 1 8.3436 -1.0055 -4.6319 37 1 9.4000 -2.7459 -6.1291 38 1 7.6224 -2.8332 -6.0863 39 1 9.6280 -4.9328 -6.7863 40 1 7.8926 -5.3273 -6.7574 41 1 9.4367 -8.2241 -8.4269 42 1 6.5315 -4.5654 -4.8494 43 1 7.4917 -5.7765 -3.9658 44 1 8.2096 -4.0918 -2.3423 45 1 6.4326 -4.0423 -2.4606 46 1 4.1515 -2.3394 1.0205 47 1 4.4983 -0.6083 0.7058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602276840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:10 Heat of formation + Delta-G solvation = -61.169821 kcal Electronic energy + Delta-G solvation = -27755.745568 eV Core-core repulsion = 23871.624652 eV Total energy + Delta-G solvation = -3884.120916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.17019 -40.28210 -39.03888 -38.15875 -36.10271 -34.83926 -34.34136 -32.22656 -31.85076 -30.16199 -27.97909 -27.74151 -25.95002 -24.76725 -24.12111 -23.32320 -22.07026 -21.53059 -20.68072 -18.83239 -18.52644 -18.36921 -17.82508 -17.20698 -17.03256 -16.66288 -16.06846 -16.03205 -15.90691 -15.74326 -15.62669 -15.43998 -15.13006 -14.96346 -14.71436 -14.33675 -14.05257 -13.81017 -13.64669 -13.31068 -13.12343 -13.02050 -12.86333 -12.74780 -12.59303 -12.51857 -12.36109 -12.22105 -12.15263 -12.11601 -11.90449 -11.77555 -11.29907 -11.12600 -10.62913 -10.44077 -10.21883 -9.93470 -9.09080 -8.81527 -8.21131 -6.31108 0.20836 0.72172 1.12114 1.31486 1.42436 1.43319 1.55062 2.00356 2.32288 2.40904 3.11054 3.14762 3.23433 3.31916 3.58863 3.76571 3.90630 3.93857 4.00872 4.06400 4.19714 4.26637 4.32389 4.40146 4.42599 4.49985 4.63331 4.66569 4.75194 4.80746 4.86342 4.90558 4.93399 4.98467 5.04673 5.11171 5.16874 5.27395 5.29094 5.35948 5.63330 5.86310 6.01599 6.10778 6.27028 6.54934 6.57939 6.81302 6.84331 7.38634 8.90020 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.002193 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.473838 B =12766.200675 C =13559.308042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 H 0.111 0.889 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.100 0.900 7 N -0.679 5.679 8 C 0.517 3.483 9 O -0.518 6.518 10 C 0.504 3.496 11 O -0.544 6.544 12 N -0.576 5.576 13 C 0.122 3.878 14 C 0.041 3.959 15 N -0.541 5.541 16 C 0.208 3.792 17 C -0.522 4.522 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.264 1.264 25 C 0.055 3.945 26 C 0.072 3.928 27 C -0.070 4.070 28 S -0.330 6.330 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.422 0.578 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.019 0.981 39 H 0.009 0.991 40 H -0.040 1.040 41 H 0.264 0.736 42 H 0.012 0.988 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.159 0.841 46 H 0.104 0.896 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.250 17.840 15.580 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.152 4.152 3 H 0.129 0.871 4 C -0.169 4.169 5 C 0.038 3.962 6 H 0.118 0.882 7 N -0.333 5.333 8 C 0.299 3.701 9 O -0.395 6.395 10 C 0.287 3.713 11 O -0.423 6.423 12 N -0.308 5.308 13 C 0.000 4.000 14 C -0.088 4.088 15 N -0.266 5.266 16 C 0.082 3.918 17 C -0.560 4.560 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.794 3.206 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.188 1.188 25 C -0.074 4.074 26 C -0.049 4.049 27 C -0.219 4.219 28 S -0.104 6.104 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.261 0.739 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.037 0.963 39 H 0.027 0.973 40 H -0.023 1.023 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.175 0.825 46 H 0.123 0.877 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.255 17.298 16.972 29.180 hybrid contribution 0.443 -0.487 -2.049 2.152 sum -15.812 16.811 14.923 27.483 Atomic orbital electron populations 1.21717 0.90434 1.03511 1.03524 1.23982 1.00224 1.00582 0.90408 0.87093 1.22367 0.95728 1.00149 0.98665 1.21866 0.85461 1.01818 0.87094 0.88192 1.46070 1.22745 1.15654 1.48872 1.20059 0.83381 0.85520 0.81177 1.90377 1.76032 1.18796 1.54338 1.20150 0.83377 0.85684 0.82078 1.90724 1.75486 1.17337 1.58782 1.48222 1.26849 1.10236 1.45515 1.21876 0.89865 0.98600 0.89657 1.22468 1.00629 0.89249 0.96410 1.62057 1.38349 1.01848 1.24360 1.19383 0.93325 0.91321 0.87792 1.21446 1.47211 0.93822 0.93568 0.91580 1.25918 0.95269 1.03551 0.94969 1.70083 1.50926 1.33735 1.02749 0.85376 0.78284 0.78623 0.78308 1.19867 1.20900 1.18776 1.22327 0.90104 1.00520 0.94452 1.23332 1.08205 0.77109 0.96250 1.24561 0.96477 1.05697 0.95190 1.88411 1.22892 1.70224 1.28906 0.91912 0.89020 0.91579 0.87658 0.88003 0.73888 0.89241 0.87749 0.89343 0.96308 0.97328 1.02272 0.92703 0.96969 0.90005 0.90467 0.82499 0.87705 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 9.23 71.98 0.66 -0.21 16 2 C -0.02 -0.20 3.93 31.02 0.12 -0.08 16 3 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.13 -1.02 5.72 30.80 0.18 -0.84 16 5 C 0.14 1.85 2.96 45.19 0.13 1.98 16 6 H 0.10 1.58 7.45 -2.39 -0.02 1.57 16 7 N -0.68 -10.19 4.88 -442.89 -2.16 -12.35 16 8 C 0.52 11.53 7.78 87.27 0.68 12.21 16 9 O -0.52 -13.40 12.63 -3.22 -0.04 -13.44 16 10 C 0.50 13.36 7.77 87.27 0.68 14.04 16 11 O -0.54 -15.36 15.95 -3.25 -0.05 -15.41 16 12 N -0.58 -16.79 3.01 -819.52 -2.47 -19.26 16 13 C 0.12 3.51 6.59 86.35 0.57 4.08 16 14 C 0.04 1.46 5.62 86.38 0.49 1.94 16 15 N -0.54 -23.08 4.62 -899.85 -4.16 -27.23 16 16 C 0.21 11.01 4.72 85.56 0.40 11.41 16 17 C -0.52 -29.21 8.41 25.60 0.22 -29.00 16 18 H 0.07 3.60 7.12 -2.92 -0.02 3.58 16 19 C 0.00 0.06 5.46 84.66 0.46 0.52 16 20 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 21 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 25 C 0.05 2.12 5.46 86.38 0.47 2.59 16 26 C 0.07 2.23 6.36 86.35 0.55 2.77 16 27 C -0.07 -1.01 7.09 72.41 0.51 -0.49 16 28 S -0.33 -5.07 22.74 -56.49 -1.28 -6.36 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 0.51 8.06 -2.39 -0.02 0.49 16 32 H 0.11 0.51 7.47 -2.39 -0.02 0.49 16 33 H 0.10 0.71 7.72 -2.39 -0.02 0.69 16 34 H 0.42 5.05 7.76 -92.71 -0.72 4.33 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.10 2.75 7.07 -2.39 -0.02 2.73 16 37 H 0.09 3.00 7.99 -2.39 -0.02 2.98 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.01 0.49 7.97 -2.39 -0.02 0.47 16 40 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 41 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 42 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.08 3.41 6.67 -2.39 -0.02 3.39 16 44 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.16 4.66 3.91 -75.72 -0.30 4.37 16 46 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.10 1.36 8.05 -2.39 -0.02 1.34 16 Total: -1.00 -67.86 383.88 -1.75 -69.61 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -0.02 Total: 13.23 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.12 Total: 20.93 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -8.50 Total: -114.53 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.09 Total: -28.85 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -5.07 SS G_CDS: -1.28 Total: -6.36 kcal Total: -67.86 -1.75 -69.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602276840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.438 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds