Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 120.00021 * 2 1 4 4 N 1.34779 * 120.00093 * 180.02562 * 2 1 3 5 5 C 1.47603 * 122.42956 * 359.96791 * 4 2 1 6 6 S 1.84078 * 102.63595 * 155.21491 * 5 4 2 7 7 C 1.84210 * 93.90772 * 33.43712 * 6 5 4 8 8 C 1.45500 * 122.42737 * 179.97438 * 4 2 1 9 9 H 1.08991 * 108.75535 * 302.02253 * 8 4 2 10 10 C 1.50700 * 108.62738 * 60.17465 * 8 4 2 11 11 O 1.21278 * 120.00149 * 24.44105 * 10 8 4 12 12 N 1.34775 * 120.00137 * 204.44183 * 10 8 4 13 13 C 1.46971 * 120.59033 * 4.62231 * 12 10 8 14 14 C 1.53804 * 108.39854 * 124.75976 * 13 12 10 15 15 H 1.09002 * 109.88089 * 289.75955 * 14 13 12 16 16 C 1.52999 * 109.53475 * 169.30073 * 14 13 12 17 17 N 1.46959 * 108.58390 * 49.63559 * 14 13 12 18 18 C 1.36938 * 120.60008 * 124.66916 * 17 14 13 19 19 H 1.07997 * 119.99638 * 327.06186 * 18 17 14 20 20 C 1.38815 * 120.00159 * 147.06057 * 18 17 14 21 21 N 1.31618 * 119.99982 * 348.60308 * 20 18 17 22 22 Si 1.86800 * 119.99787 * 168.60678 * 20 18 17 23 23 H 1.48495 * 109.47133 * 59.99655 * 22 20 18 24 24 H 1.48494 * 109.46834 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46956 * 299.99853 * 22 20 18 26 26 C 1.46969 * 118.80944 * 304.64952 * 17 14 13 27 27 H 1.09003 * 109.75056 * 175.05661 * 26 17 14 28 28 C 1.53003 * 109.61131 * 295.47909 * 26 17 14 29 29 C 1.46962 * 120.59598 * 184.90071 * 12 10 8 30 30 H 1.09004 * 109.47221 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47213 * 299.99134 * 1 2 3 32 32 H 1.09001 * 109.47428 * 59.99496 * 1 2 3 33 33 H 1.08999 * 110.77407 * 36.93010 * 5 4 2 34 34 H 1.08997 * 110.78091 * 273.50702 * 5 4 2 35 35 H 1.09004 * 111.05049 * 209.72266 * 7 6 5 36 36 H 1.09003 * 111.08522 * 85.76991 * 7 6 5 37 37 H 1.09007 * 109.60506 * 244.54173 * 13 12 10 38 38 H 1.08999 * 109.61025 * 5.04989 * 13 12 10 39 39 H 1.08996 * 109.47445 * 298.55014 * 16 14 13 40 40 H 1.08998 * 109.46926 * 58.55308 * 16 14 13 41 41 H 1.09002 * 109.47155 * 178.55041 * 16 14 13 42 42 H 0.96998 * 119.99809 * 185.01801 * 21 20 18 43 43 H 1.09002 * 109.47376 * 179.14599 * 28 26 17 44 44 H 1.09000 * 109.46861 * 299.14914 * 28 26 17 45 45 H 1.08996 * 109.46847 * 59.14081 * 28 26 17 46 46 H 1.09001 * 109.60998 * 354.94732 * 29 12 10 47 47 H 1.08999 * 109.61096 * 115.29164 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4977 -2.4756 -0.0004 6 16 2.7566 -3.5872 -0.7542 7 6 4.1817 -2.6740 -0.0273 8 6 3.6346 -1.2288 -0.0011 9 1 4.0075 -0.6967 -0.8761 10 6 4.1460 -0.5398 1.2378 11 8 3.4373 -0.4493 2.2177 12 7 5.3912 -0.0243 1.2568 13 6 6.2243 -0.0366 0.0461 14 6 6.6749 1.4043 -0.2477 15 1 5.8240 1.9979 -0.5821 16 6 7.7514 1.3921 -1.3349 17 7 7.2261 1.9833 0.9854 18 6 8.4912 2.5071 1.0048 19 1 9.2632 2.0770 0.3840 20 6 8.7813 3.5909 1.8222 21 7 7.8059 4.2556 2.4047 22 14 10.5559 4.1060 2.0955 23 1 11.1738 4.4632 0.7933 24 1 10.5961 5.2821 3.0012 25 1 11.3086 2.9823 2.7089 26 6 6.3950 1.9905 2.1975 27 1 6.9744 2.3701 3.0392 28 6 5.1700 2.8798 1.9750 29 6 5.9423 0.5546 2.4900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 0.5964 -2.4412 -0.6123 34 1 1.2640 -2.7898 1.0168 35 1 5.0614 -2.7480 -0.6668 36 1 4.4018 -3.0281 0.9798 37 1 7.0967 -0.6696 0.2088 38 1 5.6437 -0.4184 -0.7937 39 1 8.6160 0.8289 -0.9839 40 1 7.3534 0.9233 -2.2349 41 1 8.0515 2.4154 -1.5606 42 1 8.0024 5.0558 2.9164 43 1 4.5475 2.8715 2.8697 44 1 5.4942 3.8996 1.7674 45 1 4.5956 2.5020 1.1292 46 1 5.1754 0.5634 3.2646 47 1 6.7932 -0.0389 2.8243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880460356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = -12.540671 kcal Electronic energy + Delta-G solvation = -30181.930600 eV Core-core repulsion = 26299.918403 eV Total energy + Delta-G solvation = -3882.012197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.71990 -39.11985 -37.32336 -36.09081 -34.10890 -32.78600 -32.19953 -31.07022 -29.30492 -27.90500 -27.66059 -26.35888 -25.69126 -23.88983 -23.39079 -21.15985 -20.42757 -19.12190 -18.47977 -17.75825 -17.51943 -16.83728 -16.12371 -15.62041 -15.38429 -15.23138 -15.03496 -14.61507 -14.21430 -14.00158 -13.89063 -13.60711 -13.43416 -13.33792 -13.13977 -12.94775 -12.61079 -12.42273 -12.16302 -12.06064 -11.93611 -11.66194 -11.45934 -11.25882 -11.01308 -10.94388 -10.75608 -10.62551 -10.52889 -10.13122 -10.01583 -9.98722 -9.71383 -9.69901 -9.43639 -8.81237 -8.46638 -8.24415 -8.16933 -6.53700 -5.79292 -3.28356 1.23994 1.57895 2.35481 2.61013 2.87348 3.36242 3.41317 3.43057 3.45032 4.02148 4.41745 4.45490 4.49831 4.57978 4.74673 4.90416 4.97185 5.05074 5.14165 5.23736 5.30996 5.37195 5.57959 5.63054 5.63501 5.84033 5.89376 6.06582 6.17923 6.26072 6.29336 6.35652 6.52868 6.69251 6.88334 6.94339 6.99753 7.00794 7.11185 7.17269 7.66494 7.74138 7.81378 7.92781 8.01995 8.47702 8.50442 9.20950 9.80767 10.40305 11.28510 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019504 B = 0.003603 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.264679 B = 7768.951409 C = 8355.685555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.526 3.474 3 O -0.514 6.514 4 N -0.602 5.602 5 C 0.155 3.845 6 S -0.262 6.262 7 C -0.058 4.058 8 C 0.113 3.887 9 H 0.110 0.890 10 C 0.511 3.489 11 O -0.542 6.542 12 N -0.585 5.585 13 C 0.090 3.910 14 C 0.154 3.846 15 H 0.034 0.966 16 C -0.134 4.134 17 N -0.579 5.579 18 C -0.256 4.256 19 H 0.068 0.932 20 C 0.010 3.990 21 N -0.898 5.898 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.183 3.817 27 H 0.104 0.896 28 C -0.137 4.137 29 C 0.094 3.906 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.255 0.745 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.028 0.972 46 H 0.078 0.922 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.635 -14.950 -6.648 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.314 3.686 3 O -0.387 6.387 4 N -0.339 5.339 5 C -0.078 4.078 6 S -0.035 6.035 7 C -0.207 4.207 8 C 0.004 3.996 9 H 0.128 0.872 10 C 0.295 3.705 11 O -0.419 6.419 12 N -0.317 5.317 13 C -0.035 4.035 14 C 0.047 3.953 15 H 0.052 0.948 16 C -0.192 4.192 17 N -0.302 5.302 18 C -0.386 4.386 19 H 0.086 0.914 20 C -0.189 4.189 21 N -0.541 5.541 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.076 3.924 27 H 0.122 0.878 28 C -0.196 4.196 29 C -0.030 4.030 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.148 0.852 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.097 0.903 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.745 -15.158 -6.696 20.311 hybrid contribution 0.982 1.258 0.851 1.809 sum -10.764 -13.900 -5.845 18.526 Atomic orbital electron populations 1.21909 0.90854 1.04218 1.05698 1.20679 0.90592 0.82061 0.75250 1.90835 1.70208 1.30183 1.47488 1.48279 1.04201 1.05927 1.75540 1.24303 0.96937 0.82845 1.03755 1.88295 1.03765 1.43099 1.68372 1.24433 0.98841 0.91815 1.05623 1.21250 0.82074 0.96441 0.99868 0.87248 1.20327 0.81975 0.79396 0.88819 1.90638 1.55767 1.59474 1.36064 1.47929 1.13611 1.57429 1.12715 1.22628 0.94129 1.01030 0.85665 1.20838 0.95269 0.90394 0.88835 0.94814 1.21757 0.98725 1.02570 0.96181 1.44085 1.13696 1.69048 1.03358 1.19077 0.85853 1.09519 1.24117 0.91420 1.25210 0.97026 0.96114 1.00581 1.69903 1.29899 1.17598 1.36747 0.86398 0.84924 0.77793 0.77731 1.20991 1.21716 1.21041 1.20695 0.91633 0.88353 0.91686 0.87841 1.21954 0.96954 1.02439 0.98226 1.22529 0.97381 0.97731 0.85326 0.90557 0.88237 0.88462 0.86246 0.88285 0.85209 0.87529 0.91308 0.91498 0.92465 0.94210 0.91629 0.93453 0.95717 0.90764 0.95329 0.90342 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.11 36.00 0.36 -1.12 16 2 C 0.53 7.53 7.17 -10.99 -0.08 7.45 16 3 O -0.51 -10.07 16.41 5.56 0.09 -9.98 16 4 N -0.60 -7.62 2.66 -169.16 -0.45 -8.07 16 5 C 0.16 1.36 6.90 60.45 0.42 1.78 16 6 S -0.26 -2.50 23.43 -107.50 -2.52 -5.02 16 7 C -0.06 -0.60 6.87 37.98 0.26 -0.34 16 8 C 0.11 1.53 2.10 -68.80 -0.14 1.39 16 9 H 0.11 1.52 6.15 -51.93 -0.32 1.20 16 10 C 0.51 9.07 5.57 -10.99 -0.06 9.01 16 11 O -0.54 -11.33 15.50 5.56 0.09 -11.25 16 12 N -0.59 -10.69 2.60 -172.22 -0.45 -11.13 16 13 C 0.09 1.47 5.73 -3.37 -0.02 1.45 16 14 C 0.15 3.08 3.24 -67.26 -0.22 2.86 16 15 H 0.03 0.76 7.38 -51.93 -0.38 0.38 16 16 C -0.13 -2.35 8.00 37.16 0.30 -2.05 16 17 N -0.58 -13.67 2.67 -156.77 -0.42 -14.09 16 18 C -0.26 -6.54 8.53 -15.06 -0.13 -6.67 16 19 H 0.07 1.68 6.27 -52.49 -0.33 1.35 16 20 C 0.01 0.26 5.02 -17.43 -0.09 0.18 16 21 N -0.90 -24.97 9.96 55.49 0.55 -24.41 16 22 Si 0.90 21.00 29.57 -169.99 -5.03 15.97 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.18 4.33 2.32 -67.48 -0.16 4.17 16 27 H 0.10 2.74 6.17 -51.93 -0.32 2.42 16 28 C -0.14 -3.35 8.94 37.16 0.33 -3.02 16 29 C 0.09 1.91 5.97 -3.60 -0.02 1.89 16 30 H 0.08 0.44 5.78 -51.93 -0.30 0.14 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.12 0.70 6.67 -51.93 -0.35 0.35 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.11 1.12 7.85 -51.93 -0.41 0.72 16 37 H 0.07 1.06 8.12 -51.93 -0.42 0.63 16 38 H 0.07 0.90 5.34 -51.93 -0.28 0.62 16 39 H 0.06 0.99 7.21 -51.93 -0.37 0.61 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.27 7.81 -51.93 -0.41 0.86 16 42 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 2.00 7.03 -51.93 -0.36 1.64 16 45 H 0.03 0.71 7.00 -51.93 -0.36 0.34 16 46 H 0.08 1.66 6.96 -51.93 -0.36 1.30 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -33.37 371.67 -8.85 -42.22 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.07 Total: 3.18 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 0.76 Total: 16.99 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.76 Total: -57.71 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.18 Total: -21.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.52 Total: -5.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.37 -8.85 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.678 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds