Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 C 1.50696 * 109.47592 * 120.00160 * 2 1 3 5 5 N 1.30939 * 122.90308 * 304.43977 * 4 2 1 6 6 C 1.29430 * 117.36535 * 179.97438 * 5 4 2 7 7 S 1.70955 * 110.38995 * 359.72715 * 6 5 4 8 8 C 1.35668 * 122.90698 * 124.43847 * 4 2 1 9 9 C 1.46684 * 126.12693 * 359.97438 * 8 4 2 10 10 O 1.21690 * 119.99967 * 275.02386 * 9 8 4 11 11 N 1.34774 * 120.00050 * 95.02556 * 9 8 4 12 12 C 1.46507 * 119.99745 * 354.91422 * 11 9 8 13 13 C 1.46497 * 120.00150 * 174.90937 * 11 9 8 14 14 C 1.53004 * 109.47012 * 90.00361 * 13 11 9 15 15 H 1.09002 * 109.47015 * 304.99635 * 14 13 11 16 16 O 1.42901 * 109.47088 * 65.00086 * 14 13 11 17 17 C 1.53003 * 109.46953 * 184.99954 * 14 13 11 18 18 N 1.46502 * 109.46953 * 179.97438 * 17 14 13 19 19 C 1.46503 * 119.99740 * 89.99709 * 18 17 14 20 20 C 1.36933 * 120.00380 * 270.00221 * 18 17 14 21 21 H 1.08009 * 119.99740 * 24.46928 * 20 18 17 22 22 C 1.38811 * 120.00426 * 204.47295 * 20 18 17 23 23 N 1.31624 * 119.99528 * 9.81839 * 22 20 18 24 24 Si 1.86793 * 120.00304 * 189.81009 * 22 20 18 25 25 H 1.48504 * 109.46930 * 60.00273 * 24 22 20 26 26 H 1.48503 * 109.47395 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47384 * 300.00652 * 24 22 20 28 28 H 1.09002 * 109.47216 * 299.99496 * 1 2 3 29 29 H 1.08999 * 109.47517 * 59.99834 * 1 2 3 30 30 H 1.09008 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47216 * 240.00504 * 2 1 3 32 32 H 1.08999 * 109.46989 * 300.00490 * 3 2 1 33 33 H 1.09001 * 109.47191 * 59.99660 * 3 2 1 34 34 H 1.08999 * 109.47913 * 180.02562 * 3 2 1 35 35 H 1.08003 * 124.80752 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.46809 * 274.97178 * 12 11 9 37 37 H 1.08997 * 109.47223 * 34.96933 * 12 11 9 38 38 H 1.09004 * 109.47115 * 154.97753 * 12 11 9 39 39 H 1.09002 * 109.47248 * 330.00145 * 13 11 9 40 40 H 1.09000 * 109.47193 * 209.99976 * 13 11 9 41 41 H 0.96696 * 114.00249 * 60.00113 * 16 14 13 42 42 H 1.09002 * 109.46999 * 299.99690 * 17 14 13 43 43 H 1.08993 * 109.46887 * 59.99759 * 17 14 13 44 44 H 1.09006 * 109.46906 * 86.02185 * 19 18 17 45 45 H 1.08999 * 109.47236 * 206.01549 * 19 18 17 46 46 H 1.09000 * 109.47273 * 326.02246 * 19 18 17 47 47 H 0.97000 * 119.99836 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.6834 -0.3642 2.4440 6 6 2.1791 -1.0492 3.4239 7 16 3.1999 -2.2854 2.8300 8 6 2.8854 -1.7640 1.1765 9 6 3.4403 -2.3660 -0.0406 10 8 2.8078 -3.2132 -0.6432 11 7 4.6506 -1.9810 -0.4915 12 6 5.3630 -0.8839 0.1683 13 6 5.2539 -2.6595 -1.6412 14 6 4.8324 -1.9511 -2.9302 15 1 3.7446 -1.8997 -2.9775 16 8 5.3729 -0.6284 -2.9454 17 6 5.3590 -2.7312 -4.1364 18 7 4.9549 -2.0533 -5.3707 19 6 5.8219 -1.0314 -5.9626 20 6 3.7669 -2.3746 -5.9710 21 1 2.9638 -2.7988 -5.3864 22 6 3.5946 -2.1554 -7.3308 23 7 4.6250 -1.8233 -8.0795 24 14 1.9008 -2.3320 -8.0982 25 1 0.9652 -1.3723 -7.4588 26 1 1.9845 -2.0477 -9.5534 27 1 1.4061 -3.7170 -7.8926 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.9730 -0.8688 4.4686 36 1 5.0241 0.0676 -0.2412 37 1 5.1607 -0.9113 1.2390 38 1 6.4342 -0.9919 -0.0020 39 1 4.9171 -3.6958 -1.6693 40 1 6.3397 -2.6326 -1.5503 41 1 6.3386 -0.5976 -2.9057 42 1 6.4468 -2.7826 -4.0891 43 1 4.9467 -3.7401 -4.1247 44 1 6.5583 -1.5095 -6.6087 45 1 5.2188 -0.3389 -6.5498 46 1 6.3338 -0.4856 -5.1701 47 1 4.5048 -1.6704 -9.0298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755807621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = -39.702776 kcal Electronic energy + Delta-G solvation = -28793.008945 eV Core-core repulsion = 24909.818910 eV Total energy + Delta-G solvation = -3883.190035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.71190 -40.48552 -38.88219 -36.89322 -36.04735 -35.94055 -33.33392 -32.10325 -30.75863 -28.23532 -28.07145 -27.79329 -27.42665 -26.22766 -24.00734 -23.40731 -22.34105 -21.85861 -19.69825 -18.90400 -18.79100 -18.20933 -17.81191 -17.22442 -16.77569 -16.53486 -16.22601 -15.92415 -15.60429 -15.43678 -15.27866 -15.12687 -14.79525 -14.70682 -14.42550 -14.13534 -13.86917 -13.67251 -13.42757 -13.31536 -13.08609 -13.02770 -12.84162 -12.68199 -12.52939 -12.22035 -12.21677 -12.09574 -12.03228 -11.99399 -11.96483 -11.83624 -11.50173 -11.27958 -10.72863 -10.61545 -10.47100 -9.88555 -9.74035 -8.65133 -7.85905 -5.33183 -0.56976 -0.00759 0.56749 1.41228 1.43501 1.47231 1.50593 1.60201 1.99193 2.47996 3.10277 3.27159 3.40822 3.54405 3.71267 3.78523 3.96536 4.04451 4.11032 4.15543 4.23775 4.27402 4.39226 4.47559 4.50717 4.60839 4.70102 4.71110 4.77207 4.82520 4.88028 4.95162 4.96279 5.00425 5.07236 5.21006 5.23920 5.30725 5.41054 5.44181 5.57331 5.73212 6.15004 6.33542 6.58828 6.89554 7.02746 7.15566 7.88521 8.29697 9.17078 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003209 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.742063 B = 8722.405422 C = 9515.167800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.030 4.030 3 C -0.128 4.128 4 C 0.124 3.876 5 N -0.483 5.483 6 C 0.039 3.961 7 S 0.220 5.780 8 C -0.309 4.309 9 C 0.589 3.411 10 O -0.571 6.571 11 N -0.589 5.589 12 C 0.081 3.919 13 C 0.093 3.907 14 C 0.093 3.907 15 H 0.046 0.954 16 O -0.558 6.558 17 C 0.123 3.877 18 N -0.610 5.610 19 C 0.185 3.815 20 C -0.264 4.264 21 H 0.054 0.946 22 C -0.049 4.049 23 N -0.936 5.936 24 Si 0.963 3.037 25 H -0.283 1.283 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.248 0.752 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.379 0.621 42 H 0.071 0.929 43 H 0.043 0.957 44 H -0.008 1.008 45 H 0.020 0.980 46 H 0.037 0.963 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 3.912 28.455 28.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.051 4.051 3 C -0.186 4.186 4 C -0.013 4.013 5 N -0.196 5.196 6 C -0.257 4.257 7 S 0.475 5.525 8 C -0.432 4.432 9 C 0.375 3.625 10 O -0.451 6.451 11 N -0.319 5.319 12 C -0.061 4.061 13 C -0.031 4.031 14 C 0.030 3.970 15 H 0.064 0.936 16 O -0.364 6.364 17 C -0.004 4.004 18 N -0.333 5.333 19 C 0.040 3.960 20 C -0.394 4.394 21 H 0.072 0.928 22 C -0.244 4.244 23 N -0.582 5.582 24 Si 0.791 3.209 25 H -0.210 1.210 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.264 0.736 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.144 0.856 41 H 0.227 0.773 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.010 0.990 45 H 0.039 0.961 46 H 0.055 0.945 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.169 3.308 28.603 28.875 hybrid contribution -0.893 -0.027 -1.806 2.015 sum 1.276 3.281 26.797 27.028 Atomic orbital electron populations 1.21705 0.92852 1.01436 1.03127 1.19800 0.97314 0.96868 0.91158 1.21686 1.00911 0.93164 1.02849 1.20415 0.94007 0.93060 0.93787 1.65952 1.25419 1.29983 0.98274 1.29430 0.97398 0.94147 1.04680 1.83790 1.43844 1.31938 0.92921 1.25301 1.11797 1.06479 0.99671 1.17202 0.81214 0.81055 0.83046 1.90853 1.59845 1.34862 1.59547 1.47743 1.17619 1.35491 1.31079 1.22018 0.98530 0.88347 0.97209 1.22328 1.00016 0.96708 0.84017 1.22672 0.97065 0.83600 0.93617 0.93555 1.86611 1.25933 1.26978 1.96881 1.21490 0.98487 0.94568 0.85896 1.43888 1.20983 1.42752 1.25658 1.20493 0.92071 0.89851 0.93606 1.19368 0.91480 1.37701 0.90894 0.92770 1.25712 1.00518 1.01663 0.96510 1.70197 1.29709 1.53325 1.05018 0.85413 0.80185 0.78157 0.77152 1.20956 1.21237 1.20271 0.90616 0.91403 0.94146 0.93097 0.91789 0.90897 0.92708 0.73607 0.92570 0.90840 0.87525 0.90399 0.85586 0.77336 0.91050 0.93827 0.99015 0.96133 0.94515 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.10 71.98 0.66 -2.67 16 2 C -0.03 -0.81 3.20 -11.54 -0.04 -0.85 16 3 C -0.13 -2.89 9.17 71.98 0.66 -2.23 16 4 C 0.12 3.07 5.38 42.09 0.23 3.29 16 5 N -0.48 -9.84 10.33 -190.40 -1.97 -11.81 16 6 C 0.04 0.50 12.22 130.60 1.60 2.09 16 7 S 0.22 3.30 22.91 -56.49 -1.29 2.01 16 8 C -0.31 -7.67 4.46 23.88 0.11 -7.56 16 9 C 0.59 18.18 6.40 86.45 0.55 18.73 16 10 O -0.57 -23.17 16.74 -4.32 -0.07 -23.24 16 11 N -0.59 -14.75 2.84 -851.49 -2.42 -17.16 16 12 C 0.08 1.36 9.87 127.77 1.26 2.63 16 13 C 0.09 2.38 5.07 86.38 0.44 2.82 16 14 C 0.09 3.25 3.48 30.60 0.11 3.35 16 15 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 16 O -0.56 -17.86 11.55 -148.98 -1.72 -19.58 16 17 C 0.12 4.89 5.38 86.38 0.46 5.35 16 18 N -0.61 -31.58 2.84 -726.91 -2.07 -33.65 16 19 C 0.18 9.28 8.77 127.77 1.12 10.40 16 20 C -0.26 -15.48 9.65 84.03 0.81 -14.67 16 21 H 0.05 3.22 7.85 -2.91 -0.02 3.20 16 22 C -0.05 -2.89 5.11 84.86 0.43 -2.45 16 23 N -0.94 -57.17 10.68 21.65 0.23 -56.94 16 24 Si 0.96 47.80 29.56 68.60 2.03 49.83 16 25 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 28 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.05 1.72 7.10 -2.39 -0.02 1.70 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.21 7.96 -2.39 -0.02 1.19 16 35 H 0.25 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.06 1.09 7.96 -2.39 -0.02 1.07 16 37 H 0.07 1.06 6.72 -2.39 -0.02 1.04 16 38 H 0.11 1.14 7.84 -2.39 -0.02 1.12 16 39 H 0.08 2.26 7.50 -2.39 -0.02 2.24 16 40 H 0.13 2.10 7.86 -2.39 -0.02 2.09 16 41 H 0.38 8.52 8.81 -74.06 -0.65 7.87 16 42 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 43 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 44 H -0.01 -0.45 7.82 -2.38 -0.02 -0.47 16 45 H 0.02 1.14 6.73 -2.39 -0.02 1.12 16 46 H 0.04 1.52 6.82 -2.39 -0.02 1.51 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -81.03 398.30 1.44 -79.59 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.32 Total: 12.72 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 8.40 Total: 18.23 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -6.22 Total: -119.55 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -1.79 Total: -42.82 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.29 Total: 2.01 kcal Total: -81.03 1.44 -79.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755807621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.891 kcal (2) G-P(sol) polarization free energy of solvation -81.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds