Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.93755 * 2 1 4 4 C 1.50969 * 109.95848 * 238.71393 * 2 1 3 5 5 N 1.29725 * 128.67323 * 50.01007 * 4 2 1 6 6 N 1.28926 * 109.42427 * 179.23333 * 5 4 2 7 7 C 1.30828 * 109.74181 * 0.55435 * 6 5 4 8 8 N 1.34791 * 107.11533 * 359.68221 * 7 6 5 9 9 C 1.46221 * 128.60194 * 179.74720 * 8 7 6 10 10 C 1.53323 * 109.17771 * 161.73042 * 9 8 7 11 11 N 1.47083 * 109.24632 * 45.65011 * 10 9 8 12 12 C 1.34777 * 120.94217 * 116.47626 * 11 10 9 13 13 O 1.21582 * 119.99698 * 174.61178 * 12 11 10 14 14 N 1.34778 * 119.99999 * 354.61669 * 12 11 10 15 15 C 1.39950 * 119.99727 * 185.35165 * 14 12 11 16 16 C 1.38870 * 120.06870 * 33.22167 * 15 14 12 17 17 C 1.38113 * 119.92713 * 179.77010 * 16 15 14 18 18 C 1.38284 * 120.06897 * 0.50480 * 17 16 15 19 19 C 1.50701 * 119.92864 * 179.76888 * 18 17 16 20 20 C 1.50705 * 109.46888 * 269.97540 * 19 18 17 21 21 H 1.07996 * 120.00126 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99439 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00529 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99650 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47477 * 89.99755 * 24 22 20 26 26 H 1.48506 * 109.46983 * 210.00013 * 24 22 20 27 27 H 1.48508 * 109.47091 * 329.99647 * 24 22 20 28 28 C 1.38281 * 120.13956 * 359.74621 * 18 17 16 29 29 C 1.38110 * 120.07276 * 0.02562 * 28 18 17 30 30 H 1.08998 * 109.47489 * 309.79423 * 1 2 3 31 31 H 1.09002 * 109.47445 * 69.79727 * 1 2 3 32 32 H 1.09004 * 109.47211 * 189.79387 * 1 2 3 33 33 H 1.08001 * 126.43590 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.51789 * 281.64357 * 9 8 7 35 35 H 1.09000 * 109.51956 * 41.82151 * 9 8 7 36 36 H 1.08996 * 109.50958 * 165.58268 * 10 9 8 37 37 H 1.09000 * 109.51083 * 285.67335 * 10 9 8 38 38 H 0.96995 * 120.00110 * 5.34267 * 14 12 11 39 39 H 1.07999 * 120.03420 * 359.97438 * 16 15 14 40 40 H 1.07994 * 119.96907 * 180.25354 * 17 16 15 41 41 H 1.08995 * 109.47361 * 29.98283 * 19 18 17 42 42 H 1.09005 * 109.46619 * 149.98112 * 19 18 17 43 43 H 0.97003 * 120.00348 * 180.02562 * 23 22 20 44 44 H 1.08011 * 119.96469 * 180.02562 * 28 18 17 45 45 H 1.08001 * 120.03653 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9016 1.0247 0.0000 4 6 2.0453 -0.7369 -1.2127 5 7 1.7102 -0.5848 -2.4566 6 7 2.3941 -1.3976 -3.1873 7 6 3.1876 -2.1113 -2.4306 8 7 2.9877 -1.7121 -1.1588 9 6 3.6262 -2.2018 0.0621 10 6 3.4330 -1.1704 1.1801 11 7 2.0334 -0.7183 1.1860 12 6 1.2338 -0.9532 2.2452 13 8 0.1109 -0.4879 2.2742 14 7 1.6790 -1.7038 3.2723 15 6 0.8135 -2.0412 4.3191 16 6 -0.5362 -2.2486 4.0665 17 6 -1.3869 -2.5861 5.1008 18 6 -0.8978 -2.7074 6.3886 19 6 -1.8298 -3.0708 7.5157 20 6 -2.4006 -1.8139 8.1205 21 1 -2.1171 -0.8487 7.7277 22 6 -3.2846 -1.8965 9.1753 23 7 -3.6294 -3.0719 9.6540 24 14 -3.9927 -0.3387 9.9246 25 1 -5.2505 0.0212 9.2220 26 1 -4.2776 -0.5670 11.3641 27 1 -3.0127 0.7682 9.7834 28 6 0.4447 -2.4965 6.6442 29 6 1.3014 -2.1633 5.6134 30 1 -0.3634 0.6577 0.7896 31 1 -0.3634 0.3549 -0.9644 32 1 -0.3634 -1.0127 0.1748 33 1 3.8769 -2.8733 -2.7631 34 1 3.1715 -3.1477 0.3567 35 1 4.6911 -2.3489 -0.1176 36 1 3.6725 -1.6259 2.1409 37 1 4.0907 -0.3186 1.0071 38 1 2.5992 -2.0101 3.2860 39 1 -0.9196 -2.1492 3.0617 40 1 -2.4359 -2.7516 4.9044 41 1 -2.6405 -3.6899 7.1316 42 1 -1.2802 -3.6235 8.2777 43 1 -4.2517 -3.1300 10.3958 44 1 0.8237 -2.5924 7.6510 45 1 2.3498 -1.9982 5.8138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932566268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = 109.288740 kcal Electronic energy + Delta-G solvation = -28960.621135 eV Core-core repulsion = 24980.740657 eV Total energy + Delta-G solvation = -3979.880478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.74071 -41.06403 -38.80503 -37.29446 -35.58941 -34.75871 -33.31368 -32.47141 -30.58094 -30.43213 -30.30137 -28.88317 -26.68595 -25.28712 -24.26960 -23.26645 -22.73165 -22.44909 -21.45234 -20.36422 -19.74648 -18.62561 -17.91788 -17.27112 -16.84966 -16.32863 -16.28925 -15.90954 -15.28931 -15.05881 -14.96543 -14.86823 -14.26612 -14.21471 -13.93004 -13.63855 -13.13366 -13.01426 -12.82930 -12.66168 -12.54207 -12.43767 -12.02493 -11.97492 -11.73978 -11.46966 -11.26249 -10.84943 -10.81650 -10.65849 -10.59058 -10.39482 -10.06711 -9.82930 -9.66067 -9.46791 -9.37605 -9.28659 -8.42550 -8.34431 -7.44125 -6.04139 -4.07990 1.35176 1.68411 1.85424 2.00342 2.17224 2.48034 2.88418 3.27789 3.31401 3.37505 3.42016 3.58927 3.69425 3.95268 4.14034 4.21831 4.36206 4.51108 4.53405 4.61296 4.72566 4.86098 4.98498 5.25250 5.29258 5.33189 5.40599 5.48729 5.63251 5.74663 5.81393 5.84510 5.98387 6.06403 6.14719 6.25945 6.29056 6.40025 6.59623 6.83771 6.85656 7.12171 7.16929 7.48987 7.54101 7.66603 7.83438 7.91802 8.25110 8.30113 8.31930 8.97546 9.56046 11.05404 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.002171 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.141735 B =12894.048521 C =13377.726396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.256 3.744 3 H 0.105 0.895 4 C 0.169 3.831 5 N -0.277 5.277 6 N -0.298 5.298 7 C 0.156 3.844 8 N -0.472 5.472 9 C 0.087 3.913 10 C 0.096 3.904 11 N -0.638 5.638 12 C 0.711 3.289 13 O -0.546 6.546 14 N -0.679 5.679 15 C 0.118 3.882 16 C -0.115 4.115 17 C -0.107 4.107 18 C -0.041 4.041 19 C 0.048 3.952 20 C -0.511 4.511 21 H 0.057 0.943 22 C 0.058 3.942 23 N -0.895 5.895 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.273 1.273 28 C -0.107 4.107 29 C -0.143 4.143 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.221 0.779 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.397 0.603 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.262 0.738 44 H 0.122 0.878 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.812 0.385 -19.186 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.150 3.850 3 H 0.123 0.877 4 C -0.100 4.100 5 N -0.117 5.117 6 N -0.137 5.137 7 C -0.132 4.132 8 N -0.163 5.163 9 C -0.038 4.038 10 C -0.028 4.028 11 N -0.379 5.379 12 C 0.413 3.587 13 O -0.420 6.420 14 N -0.329 5.329 15 C 0.026 3.974 16 C -0.135 4.135 17 C -0.125 4.125 18 C -0.042 4.042 19 C 0.011 3.989 20 C -0.549 4.549 21 H 0.076 0.924 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.722 3.278 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.126 4.126 29 C -0.164 4.164 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.233 0.767 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.193 1.164 -20.299 27.960 hybrid contribution 1.078 -0.078 1.540 1.882 sum 20.271 1.086 -18.759 27.640 Atomic orbital electron populations 1.22161 0.89441 1.04763 1.03301 1.19616 0.97194 0.92842 0.75369 0.87706 1.25150 0.93346 0.94092 0.97460 1.74076 1.20059 1.18702 0.98820 1.74539 1.07111 1.06002 1.26084 1.26376 1.03540 1.03224 0.80027 1.46088 1.31954 1.29688 1.08603 1.22464 0.99750 0.99132 0.82411 1.21954 0.83923 0.98079 0.98854 1.47548 1.11028 1.62085 1.17199 1.15705 0.84202 0.79237 0.79540 1.91015 1.18392 1.53809 1.78828 1.42710 1.14319 1.54317 1.21513 1.17265 0.90255 1.03823 0.86066 1.21000 0.92007 1.00510 0.99986 1.21009 0.99457 0.99920 0.92151 1.20730 0.94345 0.93430 0.95682 1.18356 0.92955 0.97170 0.90425 1.21068 1.25850 0.92354 1.15611 0.92433 1.25009 0.96421 0.96165 0.96758 1.69954 1.34248 1.23087 1.26095 0.86544 0.79538 0.83405 0.78274 1.20548 1.21195 1.19802 1.20875 0.93264 1.00324 0.98133 1.20680 0.99568 1.05277 0.90869 0.88129 0.91361 0.91852 0.76291 0.88531 0.87106 0.87561 0.89099 0.76655 0.85767 0.86052 0.95303 0.95315 0.92859 0.85963 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.71 37.16 0.29 -1.28 16 2 C 0.26 2.38 3.84 -68.40 -0.26 2.12 16 3 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.17 1.69 7.17 -155.31 -1.11 0.58 16 5 N -0.28 -3.55 12.14 32.78 0.40 -3.15 16 6 N -0.30 -3.56 12.23 29.60 0.36 -3.20 16 7 C 0.16 1.17 12.81 -90.33 -1.16 0.01 16 8 N -0.47 -3.34 3.11 -115.48 -0.36 -3.70 16 9 C 0.09 0.25 7.18 -4.03 -0.03 0.22 16 10 C 0.10 0.34 6.40 -3.56 -0.02 0.32 16 11 N -0.64 -5.26 2.97 -171.54 -0.51 -5.77 16 12 C 0.71 8.39 7.75 -86.92 -0.67 7.72 16 13 O -0.55 -8.57 10.20 5.29 0.05 -8.52 16 14 N -0.68 -7.30 5.26 -14.22 -0.07 -7.37 16 15 C 0.12 1.77 6.28 -83.68 -0.53 1.24 16 16 C -0.11 -2.00 8.66 -39.39 -0.34 -2.34 16 17 C -0.11 -2.10 9.69 -39.61 -0.38 -2.48 16 18 C -0.04 -0.87 5.07 -104.59 -0.53 -1.40 16 19 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 20 C -0.51 -14.24 9.09 -34.44 -0.31 -14.55 16 21 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 24 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 28 C -0.11 -1.96 9.69 -39.61 -0.38 -2.34 16 29 C -0.14 -2.14 9.96 -39.40 -0.39 -2.54 16 30 H 0.10 1.27 6.41 -51.93 -0.33 0.94 16 31 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.06 0.83 7.38 -51.93 -0.38 0.45 16 33 H 0.22 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.11 -0.04 8.14 -51.93 -0.42 -0.46 16 36 H 0.11 0.15 5.63 -51.93 -0.29 -0.14 16 37 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.40 2.63 6.31 -40.82 -0.26 2.37 16 39 H 0.12 2.16 6.41 -52.49 -0.34 1.82 16 40 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 41 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 45 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -36.44 369.15 -10.72 -47.17 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.78 Total: 0.05 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -6.09 Total: -12.13 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.55 Total: -48.73 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.05 Total: -8.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.44 -10.72 -47.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932566268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.455 kcal (2) G-P(sol) polarization free energy of solvation -36.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds