Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.89007 * 2 1 4 4 C 1.54909 * 111.00533 * 236.11071 * 2 1 3 5 5 N 1.47426 * 104.83111 * 204.87900 * 4 2 1 6 6 C 1.34775 * 125.64611 * 204.08984 * 5 4 2 7 7 O 1.21515 * 120.00486 * 355.19568 * 6 5 4 8 8 C 1.48162 * 119.99932 * 175.18668 * 6 5 4 9 9 C 1.39941 * 120.89071 * 7.31860 * 8 6 5 10 10 C 1.38058 * 119.13962 * 179.72616 * 9 8 6 11 11 N 1.31849 * 120.97388 * 0.55240 * 10 9 8 12 12 C 1.32229 * 121.97545 * 359.71862 * 11 10 9 13 13 N 1.39831 * 119.62608 * 179.97438 * 12 11 10 14 14 C 1.35850 * 126.10206 * 359.73494 * 13 12 11 15 15 C 1.35276 * 107.61350 * 179.84117 * 14 13 12 16 16 C 1.39956 * 107.97060 * 0.42835 * 15 14 13 17 17 N 1.30820 * 108.36697 * 359.73370 * 16 15 14 18 18 C 1.38913 * 120.75322 * 0.02562 * 12 11 10 19 19 C 1.47017 * 108.70490 * 24.13408 * 5 4 2 20 20 C 1.54331 * 107.40300 * 358.85922 * 19 5 4 21 21 H 1.08997 * 110.71637 * 96.24648 * 20 19 5 22 22 N 1.46496 * 110.71943 * 219.52584 * 20 19 5 23 23 C 1.36945 * 119.99694 * 273.54062 * 22 20 19 24 24 H 1.08002 * 120.00136 * 0.02562 * 23 22 20 25 25 C 1.38807 * 119.99912 * 179.97438 * 23 22 20 26 26 N 1.31625 * 119.99945 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00158 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47225 * 90.00031 * 27 25 23 29 29 H 1.48499 * 109.47309 * 210.00484 * 27 25 23 30 30 H 1.48507 * 109.47201 * 330.00405 * 27 25 23 31 31 H 1.09002 * 109.47085 * 182.43094 * 1 2 3 32 32 H 1.08995 * 109.47145 * 302.43470 * 1 2 3 33 33 H 1.08996 * 109.46418 * 62.43137 * 1 2 3 34 34 H 1.09002 * 110.36409 * 86.04302 * 4 2 1 35 35 H 1.08997 * 110.45854 * 323.76998 * 4 2 1 36 36 H 1.08009 * 120.43066 * 359.97438 * 9 8 6 37 37 H 1.07993 * 119.51460 * 180.25450 * 10 9 8 38 38 H 1.08000 * 126.18951 * 359.97438 * 14 13 12 39 39 H 1.07997 * 126.01606 * 180.19444 * 15 14 13 40 40 H 1.07999 * 125.81750 * 179.74078 * 16 15 14 41 41 H 1.07999 * 120.53108 * 180.02562 * 18 12 11 42 42 H 1.08999 * 109.88374 * 118.35436 * 19 5 4 43 43 H 1.09000 * 109.88428 * 239.36764 * 19 5 4 44 44 H 0.96993 * 120.00143 * 93.54723 * 22 20 19 45 45 H 0.97004 * 119.99702 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8064 -1.2005 5 7 3.4275 -1.2421 -0.7739 6 6 4.4479 -1.5601 -1.5949 7 8 4.2756 -1.5835 -2.7976 8 6 5.7800 -1.8811 -1.0312 9 6 5.9637 -2.0088 0.3502 10 6 7.2194 -2.3143 0.8360 11 7 8.2421 -2.4752 0.0196 12 6 8.1165 -2.3587 -1.2915 13 7 9.2346 -2.5390 -2.1117 14 6 10.4947 -2.8291 -1.6950 15 6 11.2774 -2.9250 -2.7941 16 6 10.4783 -2.6777 -3.9162 17 7 9.2566 -2.4468 -3.5094 18 6 6.8868 -2.0582 -1.8634 19 6 3.4683 -1.2732 0.6954 20 6 2.0886 -0.8062 1.2054 21 1 1.4496 -1.6612 1.4264 22 7 2.2349 0.0517 2.3838 23 6 2.3130 -0.5066 3.6318 24 1 2.2671 -1.5795 3.7473 25 6 2.4522 0.3063 4.7484 26 7 2.5086 1.6138 4.6076 27 14 2.5594 -0.4553 6.4506 28 1 3.9808 -0.7302 6.7813 29 1 1.9914 0.4847 7.4502 30 1 1.7912 -1.7260 6.4738 31 1 -0.3633 -1.0268 0.0436 32 1 -0.3633 0.5511 0.8673 33 1 -0.3632 0.4756 -0.9110 34 1 2.1554 -0.1716 -2.0838 35 1 1.4528 -1.6704 -1.4043 36 1 5.1331 -1.8740 1.0273 37 1 7.3671 -2.4183 1.9007 38 1 10.8132 -2.9614 -0.6716 39 1 12.3339 -3.1489 -2.8038 40 1 10.8132 -2.6776 -4.9430 41 1 6.7882 -1.9643 -2.9348 42 1 3.6665 -2.2884 1.0393 43 1 4.2451 -0.6005 1.0590 44 1 2.2764 1.0152 2.2801 45 1 2.6055 2.1818 5.3879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939127766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 131.475103 kcal Electronic energy + Delta-G solvation = -28879.101616 eV Core-core repulsion = 24900.183211 eV Total energy + Delta-G solvation = -3978.918405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.78000 -40.71482 -39.39209 -37.69328 -34.40467 -33.96688 -33.00096 -32.29707 -30.92794 -30.54343 -29.59777 -27.84522 -26.81555 -24.94066 -23.97856 -23.94214 -22.19889 -21.20096 -21.05656 -20.13349 -19.90406 -18.37476 -17.28504 -17.16189 -16.29337 -16.15563 -15.78726 -15.60369 -15.41025 -14.93412 -14.81600 -14.32861 -14.15197 -13.73859 -13.70664 -13.66617 -13.35350 -13.27045 -13.02263 -12.76665 -12.57306 -12.47591 -11.89510 -11.64502 -11.23516 -11.12534 -11.03609 -10.76521 -10.73698 -10.64556 -10.40163 -10.30083 -10.10650 -10.04171 -9.87073 -9.75738 -9.42497 -9.08766 -8.59182 -8.46747 -7.21796 -5.95976 -3.28020 0.35922 0.64388 1.80122 1.87308 2.51963 2.82813 2.91764 3.31565 3.37911 3.39719 3.66114 4.01668 4.21983 4.35377 4.43475 4.65172 4.74148 4.76041 4.84394 4.95059 5.04451 5.09817 5.25304 5.37500 5.41798 5.47543 5.51388 5.56518 5.56870 5.66898 5.71667 5.73167 5.86582 5.88062 6.03582 6.06332 6.14414 6.20106 6.27722 6.32604 6.37452 6.49681 6.71115 6.82547 7.13564 7.49885 7.53821 7.63942 8.07673 8.20882 9.33298 9.85663 10.20447 11.25486 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.002878 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.294233 B = 9726.790563 C =11686.474974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.114 3.886 5 N -0.601 5.601 6 C 0.570 3.430 7 O -0.537 6.537 8 C -0.059 4.059 9 C -0.181 4.181 10 C 0.132 3.868 11 N -0.494 5.494 12 C 0.357 3.643 13 N -0.324 5.324 14 C 0.080 3.920 15 C -0.269 4.269 16 C 0.061 3.939 17 N -0.282 5.282 18 C -0.109 4.109 19 C 0.056 3.944 20 C 0.176 3.824 21 H 0.070 0.930 22 N -0.710 5.710 23 C -0.254 4.254 24 H 0.073 0.927 25 C -0.005 4.005 26 N -0.927 5.927 27 Si 0.907 3.093 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.186 0.814 37 H 0.177 0.823 38 H 0.183 0.817 39 H 0.156 0.844 40 H 0.193 0.807 41 H 0.158 0.842 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.388 0.612 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 -7.882 -11.758 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.333 5.333 6 C 0.358 3.642 7 O -0.416 6.416 8 C -0.070 4.070 9 C -0.201 4.201 10 C -0.025 4.025 11 N -0.208 5.208 12 C 0.130 3.870 13 N -0.102 5.102 14 C -0.062 4.062 15 C -0.297 4.297 16 C -0.128 4.128 17 N -0.101 5.101 18 C -0.132 4.132 19 C -0.070 4.070 20 C 0.064 3.936 21 H 0.088 0.912 22 N -0.350 5.350 23 C -0.384 4.384 24 H 0.091 0.909 25 C -0.202 4.202 26 N -0.573 5.573 27 Si 0.738 3.262 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.203 0.797 37 H 0.194 0.806 38 H 0.200 0.800 39 H 0.174 0.826 40 H 0.210 0.790 41 H 0.176 0.824 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.222 0.778 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.317 -7.898 -12.201 17.264 hybrid contribution 0.473 -0.066 0.980 1.090 sum 9.790 -7.964 -11.222 16.888 Atomic orbital electron populations 1.21602 0.93602 1.01963 1.01914 1.22683 0.96521 0.99844 0.94310 0.89654 1.22340 0.82041 0.98395 0.98015 1.48355 1.11973 1.64954 1.08005 1.17704 0.83004 0.77849 0.85634 1.90771 1.83470 1.53138 1.14179 1.20178 0.93887 0.99241 0.93720 1.23990 1.01617 0.98351 0.96102 1.22634 0.86741 0.93766 0.99366 1.66700 1.35848 1.16182 1.02092 1.17482 0.84403 0.98031 0.87058 1.45773 1.05780 1.53910 1.04725 1.22940 0.83731 0.98290 1.01194 1.21654 1.01685 1.15238 0.91127 1.24171 0.90305 0.97611 1.00667 1.77537 1.21670 1.24283 0.86602 1.21623 0.89806 0.99118 1.02682 1.23901 1.04083 1.01248 0.77743 1.21347 0.91227 0.94051 0.87015 0.91228 1.42365 1.86778 1.05327 1.00521 1.19218 1.43746 0.91946 0.83512 0.90874 1.24775 1.02048 0.95334 0.98049 1.69660 1.55930 1.02327 1.29414 0.86209 0.77741 0.78080 0.84215 1.21503 1.21706 1.20617 0.92678 0.91316 0.93061 0.90619 0.91141 0.79707 0.80612 0.79997 0.82641 0.79033 0.82425 0.91099 0.89514 0.77760 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.30 37.16 0.35 -1.35 16 2 C -0.11 -1.62 3.26 -88.33 -0.29 -1.91 16 3 H 0.09 1.30 8.01 -51.93 -0.42 0.89 16 4 C 0.11 1.57 6.36 -2.53 -0.02 1.56 16 5 N -0.60 -9.02 3.33 -171.79 -0.57 -9.60 16 6 C 0.57 9.31 7.83 -12.19 -0.10 9.22 16 7 O -0.54 -10.14 16.76 5.35 0.09 -10.05 16 8 C -0.06 -0.87 5.90 -104.67 -0.62 -1.49 16 9 C -0.18 -2.35 8.67 -39.01 -0.34 -2.69 16 10 C 0.13 1.59 11.17 -17.61 -0.20 1.39 16 11 N -0.49 -6.61 9.83 -12.34 -0.12 -6.73 16 12 C 0.36 5.14 7.55 -154.43 -1.17 3.97 16 13 N -0.32 -4.40 3.81 -12.12 -0.05 -4.45 16 14 C 0.08 0.87 11.10 -16.83 -0.19 0.68 16 15 C -0.27 -2.41 10.80 -39.99 -0.43 -2.84 16 16 C 0.06 0.60 12.02 -17.34 -0.21 0.39 16 17 N -0.28 -3.78 11.83 30.64 0.36 -3.42 16 18 C -0.11 -1.64 9.27 -38.82 -0.36 -2.00 16 19 C 0.06 0.83 4.63 -3.06 -0.01 0.82 16 20 C 0.18 2.92 3.08 -65.96 -0.20 2.72 16 21 H 0.07 1.16 8.00 -51.93 -0.42 0.75 16 22 N -0.71 -15.21 5.18 -51.52 -0.27 -15.47 16 23 C -0.25 -6.14 9.98 -15.06 -0.15 -6.29 16 24 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 25 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 26 N -0.93 -25.66 13.06 55.49 0.72 -24.94 16 27 Si 0.91 20.48 29.55 -169.99 -5.02 15.46 16 28 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 31 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.19 2.35 2.95 -52.85 -0.16 2.19 16 37 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.18 1.60 8.05 -52.49 -0.42 1.18 16 39 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.16 2.49 7.39 -52.49 -0.39 2.10 16 42 H 0.07 0.97 6.82 -51.93 -0.35 0.62 16 43 H 0.09 1.40 6.55 -51.93 -0.34 1.06 16 44 H 0.39 9.07 7.72 -40.82 -0.32 8.75 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -30.95 377.41 -8.91 -39.86 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.73 Total: 11.68 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -4.02 Total: 1.97 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.08 Total: -64.60 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.95 -8.91 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939127766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.340 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds