Wall clock time and date at job start Sat Apr 11 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.89007 * 2 1 4 4 C 1.54909 * 111.00533 * 236.11071 * 2 1 3 5 5 N 1.47426 * 104.83111 * 204.87900 * 4 2 1 6 6 C 1.34775 * 125.64611 * 204.08984 * 5 4 2 7 7 O 1.21515 * 120.00486 * 355.19568 * 6 5 4 8 8 C 1.48162 * 119.99932 * 175.18668 * 6 5 4 9 9 C 1.39941 * 120.89071 * 7.31860 * 8 6 5 10 10 C 1.38058 * 119.13962 * 179.72616 * 9 8 6 11 11 N 1.31849 * 120.97388 * 0.55240 * 10 9 8 12 12 C 1.32229 * 121.97545 * 359.71862 * 11 10 9 13 13 N 1.39831 * 119.62608 * 179.97438 * 12 11 10 14 14 C 1.35850 * 126.10206 * 359.73494 * 13 12 11 15 15 C 1.35276 * 107.61350 * 179.84117 * 14 13 12 16 16 C 1.39956 * 107.97060 * 0.42835 * 15 14 13 17 17 N 1.30820 * 108.36697 * 359.73370 * 16 15 14 18 18 C 1.38913 * 120.75322 * 0.02562 * 12 11 10 19 19 C 1.47017 * 108.70490 * 24.13408 * 5 4 2 20 20 C 1.54331 * 107.40300 * 358.85922 * 19 5 4 21 21 H 1.08997 * 110.71637 * 96.24648 * 20 19 5 22 22 N 1.46496 * 110.71943 * 219.52584 * 20 19 5 23 23 C 1.36945 * 119.99694 * 273.54062 * 22 20 19 24 24 H 1.08002 * 120.00136 * 0.02562 * 23 22 20 25 25 C 1.38807 * 119.99912 * 179.97438 * 23 22 20 26 26 N 1.31625 * 119.99945 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00158 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47225 * 90.00031 * 27 25 23 29 29 H 1.48499 * 109.47309 * 210.00484 * 27 25 23 30 30 H 1.48507 * 109.47201 * 330.00405 * 27 25 23 31 31 H 1.09002 * 109.47085 * 182.43094 * 1 2 3 32 32 H 1.08995 * 109.47145 * 302.43470 * 1 2 3 33 33 H 1.08996 * 109.46418 * 62.43137 * 1 2 3 34 34 H 1.09002 * 110.36409 * 86.04302 * 4 2 1 35 35 H 1.08997 * 110.45854 * 323.76998 * 4 2 1 36 36 H 1.08009 * 120.43066 * 359.97438 * 9 8 6 37 37 H 1.07993 * 119.51460 * 180.25450 * 10 9 8 38 38 H 1.08000 * 126.18951 * 359.97438 * 14 13 12 39 39 H 1.07997 * 126.01606 * 180.19444 * 15 14 13 40 40 H 1.07999 * 125.81750 * 179.74078 * 16 15 14 41 41 H 1.07999 * 120.53108 * 180.02562 * 18 12 11 42 42 H 1.08999 * 109.88374 * 118.35436 * 19 5 4 43 43 H 1.09000 * 109.88428 * 239.36764 * 19 5 4 44 44 H 0.96993 * 120.00143 * 93.54723 * 22 20 19 45 45 H 0.97004 * 119.99702 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8064 -1.2005 5 7 3.4275 -1.2421 -0.7739 6 6 4.4479 -1.5601 -1.5949 7 8 4.2756 -1.5835 -2.7976 8 6 5.7800 -1.8811 -1.0312 9 6 5.9637 -2.0088 0.3502 10 6 7.2194 -2.3143 0.8360 11 7 8.2421 -2.4752 0.0196 12 6 8.1165 -2.3587 -1.2915 13 7 9.2346 -2.5390 -2.1117 14 6 10.4947 -2.8291 -1.6950 15 6 11.2774 -2.9250 -2.7941 16 6 10.4783 -2.6777 -3.9162 17 7 9.2566 -2.4468 -3.5094 18 6 6.8868 -2.0582 -1.8634 19 6 3.4683 -1.2732 0.6954 20 6 2.0886 -0.8062 1.2054 21 1 1.4496 -1.6612 1.4264 22 7 2.2349 0.0517 2.3838 23 6 2.3130 -0.5066 3.6318 24 1 2.2671 -1.5795 3.7473 25 6 2.4522 0.3063 4.7484 26 7 2.5086 1.6138 4.6076 27 14 2.5594 -0.4553 6.4506 28 1 3.9808 -0.7302 6.7813 29 1 1.9914 0.4847 7.4502 30 1 1.7912 -1.7260 6.4738 31 1 -0.3633 -1.0268 0.0436 32 1 -0.3633 0.5511 0.8673 33 1 -0.3632 0.4756 -0.9110 34 1 2.1554 -0.1716 -2.0838 35 1 1.4528 -1.6704 -1.4043 36 1 5.1331 -1.8740 1.0273 37 1 7.3671 -2.4183 1.9007 38 1 10.8132 -2.9614 -0.6716 39 1 12.3339 -3.1489 -2.8038 40 1 10.8132 -2.6776 -4.9430 41 1 6.7882 -1.9643 -2.9348 42 1 3.6665 -2.2884 1.0393 43 1 4.2451 -0.6005 1.0590 44 1 2.2764 1.0152 2.2801 45 1 2.6055 2.1818 5.3879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939127766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:34 Heat of formation + Delta-G solvation = 113.116330 kcal Electronic energy + Delta-G solvation = -28879.897712 eV Core-core repulsion = 24900.183211 eV Total energy + Delta-G solvation = -3979.714501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.68054 -41.82086 -40.51694 -39.02613 -35.93440 -35.14092 -34.09526 -33.53361 -32.49788 -31.43057 -30.55381 -29.28722 -27.94455 -26.26351 -25.39654 -24.98416 -23.39055 -22.33247 -21.88227 -21.40535 -20.99690 -19.38901 -19.04318 -18.30993 -17.54004 -17.32208 -16.82991 -16.70410 -16.52111 -16.36990 -15.88276 -15.55740 -15.32102 -15.20951 -14.82377 -14.70009 -14.59284 -14.44105 -14.09225 -13.82375 -13.73001 -13.64090 -13.10590 -12.87284 -12.82539 -12.80263 -12.15195 -12.10556 -12.00419 -11.86235 -11.68559 -11.60412 -11.59128 -11.35858 -11.18919 -11.01904 -10.73355 -10.28998 -9.81682 -9.40575 -9.02084 -7.89928 -5.19751 -0.68758 -0.40883 0.91405 0.98800 1.54588 1.56061 1.61893 1.63194 1.71408 1.80467 2.58322 2.61031 2.97261 3.22124 3.37457 3.40436 3.58230 3.68782 3.77444 3.79575 3.88783 4.01486 4.06342 4.21296 4.30105 4.36267 4.44944 4.51262 4.56850 4.58811 4.66473 4.70127 4.78459 4.82948 4.85611 5.01009 5.05350 5.11288 5.14964 5.24162 5.33926 5.48994 5.55917 5.61372 5.94653 6.24288 6.25775 6.30621 6.70198 6.81017 7.38878 8.09423 8.33156 9.32779 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.002878 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.294233 B = 9726.790563 C =11686.474974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 H 0.072 0.928 4 C 0.115 3.885 5 N -0.597 5.597 6 C 0.568 3.432 7 O -0.569 6.569 8 C -0.068 4.068 9 C -0.179 4.179 10 C 0.141 3.859 11 N -0.497 5.497 12 C 0.354 3.646 13 N -0.344 5.344 14 C 0.062 3.938 15 C -0.255 4.255 16 C 0.068 3.932 17 N -0.330 5.330 18 C -0.126 4.126 19 C 0.066 3.934 20 C 0.171 3.829 21 H 0.077 0.923 22 N -0.720 5.720 23 C -0.236 4.236 24 H 0.086 0.914 25 C -0.068 4.068 26 N -0.967 5.967 27 Si 0.964 3.036 28 H -0.286 1.286 29 H -0.306 1.306 30 H -0.268 1.268 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.191 0.809 37 H 0.211 0.789 38 H 0.198 0.802 39 H 0.191 0.809 40 H 0.229 0.771 41 H 0.141 0.859 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.375 0.625 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.952 -9.685 -11.816 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.124 4.124 3 H 0.091 0.909 4 C -0.006 4.006 5 N -0.329 5.329 6 C 0.357 3.643 7 O -0.450 6.450 8 C -0.079 4.079 9 C -0.198 4.198 10 C -0.017 4.017 11 N -0.211 5.211 12 C 0.127 3.873 13 N -0.123 5.123 14 C -0.078 4.078 15 C -0.283 4.283 16 C -0.121 4.121 17 N -0.149 5.149 18 C -0.149 4.149 19 C -0.059 4.059 20 C 0.060 3.940 21 H 0.095 0.905 22 N -0.358 5.358 23 C -0.368 4.368 24 H 0.104 0.896 25 C -0.260 4.260 26 N -0.617 5.617 27 Si 0.794 3.206 28 H -0.213 1.213 29 H -0.233 1.233 30 H -0.193 1.193 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.207 0.793 37 H 0.227 0.773 38 H 0.215 0.785 39 H 0.208 0.792 40 H 0.245 0.755 41 H 0.159 0.841 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.208 0.792 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.453 -9.756 -12.292 18.856 hybrid contribution 0.199 0.443 0.863 0.991 sum 10.652 -9.313 -11.429 18.188 Atomic orbital electron populations 1.21564 0.92165 1.02731 1.02090 1.22587 0.97623 0.98841 0.93339 0.90949 1.22429 0.81609 0.98994 0.97610 1.48365 1.12261 1.64343 1.07893 1.17934 0.83624 0.77419 0.85299 1.90747 1.84024 1.54754 1.15458 1.20117 0.93080 1.00144 0.94589 1.23994 1.02311 0.98461 0.95078 1.23216 0.85937 0.91857 1.00681 1.66842 1.36131 1.16458 1.01629 1.17630 0.84657 0.97435 0.87564 1.45900 1.06268 1.55265 1.04857 1.23446 0.83110 0.98532 1.02675 1.22115 1.02980 1.13223 0.89974 1.24918 0.89317 0.95246 1.02581 1.77527 1.23903 1.26440 0.86985 1.21500 0.90626 1.00836 1.01970 1.23675 1.02500 1.02065 0.77643 1.21533 0.92218 0.93943 0.86287 0.90491 1.42477 1.86907 1.05213 1.01247 1.19621 1.40362 0.92416 0.84372 0.89630 1.25457 1.03657 0.95684 1.01249 1.69809 1.58846 1.03581 1.29498 0.85277 0.77594 0.77322 0.80358 1.21334 1.23300 1.19312 0.91395 0.93217 0.91020 0.90570 0.89346 0.79293 0.77282 0.78501 0.79187 0.75516 0.84120 0.89122 0.90467 0.79210 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.30 71.98 0.67 -2.39 16 2 C -0.10 -2.86 3.26 -9.31 -0.03 -2.89 16 3 H 0.07 2.20 8.01 -2.39 -0.02 2.18 16 4 C 0.12 3.02 6.36 86.85 0.55 3.57 16 5 N -0.60 -17.43 3.33 -815.72 -2.71 -20.14 16 6 C 0.57 18.62 7.83 86.88 0.68 19.30 16 7 O -0.57 -21.90 16.76 -3.76 -0.06 -21.96 16 8 C -0.07 -2.03 5.90 -19.90 -0.12 -2.15 16 9 C -0.18 -4.44 8.67 22.64 0.20 -4.24 16 10 C 0.14 3.13 11.17 84.65 0.95 4.07 16 11 N -0.50 -12.74 9.83 -192.95 -1.90 -14.63 16 12 C 0.35 10.22 7.55 132.78 1.00 11.22 16 13 N -0.34 -9.29 3.81 -192.27 -0.73 -10.02 16 14 C 0.06 1.26 11.10 83.39 0.93 2.19 16 15 C -0.26 -3.93 10.80 22.00 0.24 -3.69 16 16 C 0.07 1.20 12.02 85.26 1.02 2.22 16 17 N -0.33 -8.80 11.83 -56.98 -0.67 -9.47 16 18 C -0.13 -3.91 9.27 22.76 0.21 -3.70 16 19 C 0.07 1.89 4.63 86.73 0.40 2.29 16 20 C 0.17 5.43 3.08 46.27 0.14 5.58 16 21 H 0.08 2.38 8.00 -2.39 -0.02 2.36 16 22 N -0.72 -30.46 5.18 -316.91 -1.64 -32.10 16 23 C -0.24 -11.18 9.98 84.03 0.84 -10.34 16 24 H 0.09 3.78 7.83 -2.91 -0.02 3.76 16 25 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 26 N -0.97 -54.49 13.06 21.65 0.28 -54.21 16 27 Si 0.96 41.89 29.55 68.60 2.03 43.92 16 28 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 29 H -0.31 -13.90 7.11 99.48 0.71 -13.19 16 30 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 31 H 0.07 1.45 8.12 -2.39 -0.02 1.43 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 2.02 8.09 -2.39 -0.02 2.01 16 35 H 0.09 2.04 8.04 -2.39 -0.02 2.02 16 36 H 0.19 4.49 2.95 -3.25 -0.01 4.48 16 37 H 0.21 3.13 8.06 -2.91 -0.02 3.10 16 38 H 0.20 3.13 8.05 -2.91 -0.02 3.11 16 39 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.23 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.14 4.77 7.39 -2.91 -0.02 4.75 16 42 H 0.09 2.27 6.82 -2.39 -0.02 2.26 16 43 H 0.08 2.42 6.55 -2.39 -0.02 2.40 16 44 H 0.38 17.76 7.72 -92.71 -0.72 17.05 16 45 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -68.34 377.41 3.06 -65.28 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.32 Total: 35.31 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 8.15 Total: 18.03 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -7.37 Total: -140.58 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.06 Total: -21.96 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -68.34 3.06 -65.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939127766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.396 kcal (2) G-P(sol) polarization free energy of solvation -68.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds