Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.64017 * 2 1 4 4 C 1.54319 * 110.72218 * 236.85783 * 2 1 3 5 5 N 1.47026 * 107.27208 * 219.44641 * 4 2 1 6 6 C 1.34769 * 125.65110 * 178.97664 * 5 4 2 7 7 O 1.21519 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.48179 * 120.00190 * 179.97438 * 6 5 4 9 9 C 1.39135 * 119.69419 * 179.72368 * 8 6 5 10 10 C 1.39292 * 118.97086 * 179.79767 * 9 8 6 11 11 N 1.39941 * 120.81589 * 180.22026 * 10 9 8 12 12 C 1.35826 * 126.09810 * 185.25819 * 11 10 9 13 13 C 1.35285 * 107.61427 * 179.97438 * 12 11 10 14 14 C 1.39947 * 107.97154 * 359.97438 * 13 12 11 15 15 N 1.30827 * 108.36349 * 359.74551 * 14 13 12 16 16 C 1.39276 * 118.35542 * 0.46810 * 10 9 8 17 17 C 1.38340 * 119.27812 * 359.75104 * 16 10 9 18 18 N 1.31589 * 120.97878 * 0.02562 * 17 16 10 19 19 C 1.47428 * 108.70112 * 358.93560 * 5 4 2 20 20 C 1.55118 * 104.94414 * 24.00601 * 19 5 4 21 21 H 1.09004 * 110.93289 * 81.21359 * 20 19 5 22 22 N 1.46492 * 111.16628 * 205.12985 * 20 19 5 23 23 C 1.36938 * 120.00078 * 267.17197 * 22 20 19 24 24 H 1.07993 * 119.99988 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99870 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99910 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47192 * 89.99772 * 27 25 23 29 29 H 1.48506 * 109.47232 * 209.99827 * 27 25 23 30 30 H 1.48499 * 109.47313 * 329.99902 * 27 25 23 31 31 H 1.09002 * 109.47153 * 179.30077 * 1 2 3 32 32 H 1.09001 * 109.46832 * 59.30268 * 1 2 3 33 33 H 1.09004 * 109.47261 * 299.30249 * 1 2 3 34 34 H 1.09001 * 109.88102 * 338.85707 * 4 2 1 35 35 H 1.08997 * 109.89082 * 99.87264 * 4 2 1 36 36 H 1.07996 * 120.51173 * 0.02562 * 9 8 6 37 37 H 1.08004 * 126.18817 * 0.02562 * 12 11 10 38 38 H 1.08001 * 126.01142 * 180.02562 * 13 12 11 39 39 H 1.07990 * 125.81737 * 180.02562 * 14 13 12 40 40 H 1.08006 * 120.36040 * 179.72689 * 16 10 9 41 41 H 1.08004 * 119.51155 * 179.97438 * 17 16 10 42 42 H 1.09003 * 110.36619 * 142.96814 * 19 5 4 43 43 H 1.09004 * 110.37083 * 265.18300 * 19 5 4 44 44 H 0.97004 * 120.00365 * 87.17024 * 22 20 19 45 45 H 0.96995 * 120.00261 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 3.2445 -1.5495 -0.7415 6 6 3.9923 -2.3811 -1.4936 7 8 3.7188 -2.5523 -2.6651 8 6 5.1481 -3.0866 -0.8919 9 6 5.9123 -3.9481 -1.6728 10 6 6.9980 -4.6002 -1.0929 11 7 7.7954 -5.4714 -1.8436 12 6 8.8121 -6.2363 -1.3679 13 6 9.3237 -6.9312 -2.4097 14 6 8.6011 -6.5840 -3.5568 15 7 7.6831 -5.7155 -3.2185 16 6 7.2671 -4.3678 0.2537 17 6 6.4579 -3.5003 0.9654 18 7 5.4416 -2.8951 0.3888 19 6 3.4633 -1.2509 0.6855 20 6 2.0790 -0.7933 1.2152 21 1 1.4452 -1.6511 1.4404 22 7 2.2214 0.0738 2.3874 23 6 2.1867 -0.4650 3.6458 24 1 2.0539 -1.5290 3.7742 25 6 2.3222 0.3566 4.7565 26 7 2.2883 -0.1612 5.9662 27 14 2.5525 2.1969 4.5345 28 1 1.2254 2.8629 4.5130 29 1 3.3580 2.7344 5.6604 30 1 3.2574 2.4566 3.2535 31 1 -0.3633 -1.0276 -0.0125 32 1 -0.3633 0.5246 -0.8837 33 1 -0.3634 0.5030 0.8962 34 1 1.3130 -1.4732 -1.5800 35 1 2.3716 -0.0992 -1.9990 36 1 5.6697 -4.1058 -2.7132 37 1 9.1501 -6.2820 -0.3431 38 1 10.1448 -7.6313 -2.3640 39 1 8.7694 -6.9709 -4.5509 40 1 8.0981 -4.8599 0.7372 41 1 6.6629 -3.3177 2.0100 42 1 3.7960 -2.1446 1.2135 43 1 4.1946 -0.4504 0.7979 44 1 2.3403 1.0296 2.2721 45 1 2.3826 0.4129 6.7423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939129524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = 98.803096 kcal Electronic energy + Delta-G solvation = -28847.429507 eV Core-core repulsion = 24867.094338 eV Total energy + Delta-G solvation = -3980.335170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.67318 -41.72267 -40.44253 -38.98582 -36.02830 -35.55801 -33.98173 -32.97857 -32.63463 -31.43374 -30.83652 -29.45733 -27.91163 -25.91831 -25.32458 -24.96782 -23.20386 -22.37925 -21.87363 -21.53040 -20.84109 -19.50270 -19.27007 -18.29031 -17.62233 -17.10222 -16.94617 -16.65785 -16.57600 -16.29809 -15.88821 -15.74960 -15.16463 -15.06069 -14.82024 -14.66467 -14.58011 -14.40614 -14.35243 -14.02805 -13.73149 -13.53333 -13.21126 -13.10147 -12.93872 -12.88770 -12.27859 -12.10038 -12.08788 -11.94871 -11.84381 -11.77762 -11.54358 -11.34158 -11.04433 -10.53734 -10.50611 -10.39098 -9.72428 -9.52954 -9.27168 -7.96740 -5.31270 -0.67805 -0.34052 1.00293 1.14109 1.43825 1.45734 1.52628 1.58211 1.77174 1.80050 2.53178 2.66339 2.87365 3.20414 3.32798 3.45108 3.49198 3.71210 3.72648 3.85040 3.90907 3.98365 4.01672 4.05879 4.33542 4.38443 4.44341 4.50250 4.53926 4.62029 4.65420 4.67816 4.82347 4.90082 5.00656 5.01107 5.11728 5.14374 5.16373 5.30700 5.42845 5.46845 5.58309 5.82614 5.96126 6.25944 6.31377 6.50941 6.55686 6.92764 7.11335 7.84836 8.05159 9.24255 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.002736 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.925741 B =10232.151676 C =11769.705670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 H 0.090 0.910 4 C 0.114 3.886 5 N -0.591 5.591 6 C 0.574 3.426 7 O -0.571 6.571 8 C 0.093 3.907 9 C -0.131 4.131 10 C 0.196 3.804 11 N -0.347 5.347 12 C 0.052 3.948 13 C -0.254 4.254 14 C 0.060 3.940 15 N -0.341 5.341 16 C -0.152 4.152 17 C 0.127 3.873 18 N -0.476 5.476 19 C 0.093 3.907 20 C 0.171 3.829 21 H 0.063 0.937 22 N -0.732 5.732 23 C -0.225 4.225 24 H 0.060 0.940 25 C -0.057 4.057 26 N -0.981 5.981 27 Si 0.949 3.051 28 H -0.280 1.280 29 H -0.300 1.300 30 H -0.251 1.251 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.220 0.780 38 H 0.190 0.810 39 H 0.219 0.781 40 H 0.194 0.806 41 H 0.204 0.796 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.368 0.632 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.284 -10.730 -15.786 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 H 0.108 0.892 4 C -0.008 4.008 5 N -0.321 5.321 6 C 0.362 3.638 7 O -0.451 6.451 8 C -0.044 4.044 9 C -0.155 4.155 10 C 0.094 3.906 11 N -0.125 5.125 12 C -0.087 4.087 13 C -0.281 4.281 14 C -0.128 4.128 15 N -0.159 5.159 16 C -0.175 4.175 17 C -0.032 4.032 18 N -0.188 5.188 19 C -0.032 4.032 20 C 0.061 3.939 21 H 0.081 0.919 22 N -0.374 5.374 23 C -0.355 4.355 24 H 0.078 0.922 25 C -0.249 4.249 26 N -0.632 5.632 27 Si 0.777 3.223 28 H -0.207 1.207 29 H -0.227 1.227 30 H -0.176 1.176 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.156 0.844 37 H 0.237 0.763 38 H 0.207 0.793 39 H 0.236 0.764 40 H 0.211 0.789 41 H 0.221 0.779 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.202 0.798 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.604 -9.668 -16.181 22.675 hybrid contribution 1.173 0.005 0.007 1.173 sum 13.777 -9.664 -16.174 23.341 Atomic orbital electron populations 1.21657 0.92369 1.02350 1.02511 1.22502 0.97730 0.99473 0.92914 0.89173 1.22157 0.86956 0.94629 0.97064 1.48333 1.29079 1.42113 1.12615 1.17763 0.82096 0.79116 0.84819 1.90744 1.71726 1.65908 1.16742 1.20719 0.96064 0.96952 0.90683 1.21590 0.94648 0.97196 1.02043 1.17785 0.90608 0.91001 0.91214 1.46053 1.26492 1.33446 1.06472 1.23642 0.89278 0.92800 1.03030 1.22140 1.07056 1.08073 0.90842 1.24842 0.91938 0.93702 1.02292 1.77550 1.25508 1.22286 0.90527 1.22459 1.03553 1.00768 0.90713 1.23445 0.87839 0.90069 1.01854 1.67971 1.17985 1.23509 1.09362 1.23442 0.99328 1.02147 0.78322 1.21576 0.93353 0.93237 0.85762 0.91923 1.42504 1.87976 1.05600 1.01343 1.18976 1.40186 0.93415 0.82964 0.92183 1.25394 1.02662 1.02159 0.94680 1.69870 1.59235 1.36113 0.97950 0.85505 0.77942 0.81250 0.77624 1.20652 1.22690 1.17560 0.92499 0.90450 0.92667 0.90612 0.90500 0.84415 0.76310 0.79307 0.76436 0.78921 0.77922 0.88537 0.92154 0.79779 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.14 71.98 0.66 -2.65 16 2 C -0.11 -3.04 3.19 -9.61 -0.03 -3.07 16 3 H 0.09 2.47 8.00 -2.38 -0.02 2.45 16 4 C 0.11 3.26 6.47 86.73 0.56 3.82 16 5 N -0.59 -19.58 3.33 -814.38 -2.71 -22.29 16 6 C 0.57 20.29 7.84 86.89 0.68 20.97 16 7 O -0.57 -22.60 16.65 -3.78 -0.06 -22.66 16 8 C 0.09 2.91 6.72 41.86 0.28 3.19 16 9 C -0.13 -3.81 9.26 22.74 0.21 -3.60 16 10 C 0.20 4.40 6.72 38.35 0.26 4.66 16 11 N -0.35 -7.22 3.81 -186.86 -0.71 -7.93 16 12 C 0.05 0.63 10.85 83.39 0.91 1.53 16 13 C -0.25 -2.72 10.80 22.00 0.24 -2.49 16 14 C 0.06 0.91 12.02 85.26 1.02 1.94 16 15 N -0.34 -8.08 11.98 -56.98 -0.68 -8.77 16 16 C -0.15 -2.39 9.54 22.54 0.21 -2.18 16 17 C 0.13 2.53 11.17 84.75 0.95 3.48 16 18 N -0.48 -13.58 6.59 -185.12 -1.22 -14.80 16 19 C 0.09 3.23 5.64 86.93 0.49 3.72 16 20 C 0.17 6.19 3.17 46.46 0.15 6.34 16 21 H 0.06 2.44 8.00 -2.38 -0.02 2.42 16 22 N -0.73 -31.77 5.06 -316.04 -1.60 -33.37 16 23 C -0.22 -12.03 10.44 84.03 0.88 -11.15 16 24 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 25 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 26 N -0.98 -60.58 13.97 21.65 0.30 -60.28 16 27 Si 0.95 43.49 27.73 68.60 1.90 45.39 16 28 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 30 H -0.25 -10.32 6.52 99.48 0.65 -9.67 16 31 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.08 2.09 7.80 -2.39 -0.02 2.07 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.14 4.51 7.38 -2.91 -0.02 4.49 16 37 H 0.22 0.65 7.16 -2.91 -0.02 0.63 16 38 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.22 1.70 8.06 -2.92 -0.02 1.67 16 40 H 0.19 1.11 6.90 -2.91 -0.02 1.09 16 41 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.10 3.55 5.88 -2.39 -0.01 3.53 16 43 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 44 H 0.37 15.34 5.62 -92.71 -0.52 14.82 16 45 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -78.27 376.30 3.60 -74.67 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.45 Total: 28.27 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 7.93 Total: 21.76 kcal Atomic # 7 Polarization: -140.81 SS G_CDS: -6.62 Total: -147.43 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.06 Total: -22.66 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.90 Total: 45.39 kcal Total: -78.27 3.60 -74.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939129524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.475 kcal (2) G-P(sol) polarization free energy of solvation -78.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds