Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 110.88439 * 2 1 4 4 C 1.54909 * 111.00696 * 236.11929 * 2 1 3 5 5 N 1.47418 * 104.82850 * 204.87695 * 4 2 1 6 6 C 1.34780 * 125.64334 * 204.08669 * 5 4 2 7 7 O 1.21627 * 120.00169 * 5.86761 * 6 5 4 8 8 C 1.47153 * 119.99907 * 185.86279 * 6 5 4 9 9 C 1.37071 * 127.21326 * 354.25254 * 8 6 5 10 10 N 1.33310 * 106.37521 * 180.25616 * 9 8 6 11 11 N 1.28497 * 109.49931 * 359.76268 * 10 9 8 12 12 N 1.28720 * 110.66876 * 359.97438 * 11 10 9 13 13 C 1.40084 * 126.06052 * 179.97438 * 12 11 10 14 14 C 1.38862 * 120.06570 * 315.20228 * 13 12 11 15 15 C 1.38112 * 119.93132 * 179.97438 * 14 13 12 16 16 C 1.38287 * 120.06682 * 359.97438 * 15 14 13 17 17 C 1.38281 * 120.13919 * 0.25849 * 16 15 14 18 18 C 1.38113 * 120.07006 * 359.48532 * 17 16 15 19 19 C 1.47021 * 108.70747 * 24.35843 * 5 4 2 20 20 C 1.54333 * 107.26421 * 358.57937 * 19 5 4 21 21 H 1.09005 * 110.66366 * 96.52681 * 20 19 5 22 22 N 1.46495 * 110.85002 * 219.67370 * 20 19 5 23 23 C 1.36937 * 119.99988 * 269.00162 * 22 20 19 24 24 H 1.07992 * 120.00368 * 5.29982 * 23 22 20 25 25 C 1.38814 * 119.99714 * 185.30262 * 23 22 20 26 26 N 1.31619 * 120.00184 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00044 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46892 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47363 * 119.99666 * 27 25 23 30 30 H 1.48493 * 109.47014 * 239.99918 * 27 25 23 31 31 H 1.08999 * 109.47517 * 182.42739 * 1 2 3 32 32 H 1.09007 * 109.47651 * 302.42786 * 1 2 3 33 33 H 1.09000 * 109.47483 * 62.42945 * 1 2 3 34 34 H 1.08996 * 110.36280 * 86.03759 * 4 2 1 35 35 H 1.09004 * 110.45624 * 323.76142 * 4 2 1 36 36 H 1.08001 * 126.81439 * 0.05365 * 9 8 6 37 37 H 1.08007 * 120.03950 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.96849 * 180.02562 * 15 14 13 39 39 H 1.08005 * 119.93028 * 179.97438 * 16 15 14 40 40 H 1.08001 * 119.96644 * 179.74530 * 17 16 15 41 41 H 1.07994 * 120.03779 * 180.25564 * 18 17 16 42 42 H 1.08998 * 109.88309 * 118.12919 * 19 5 4 43 43 H 1.08998 * 109.88091 * 239.29018 * 19 5 4 44 44 H 0.97001 * 119.99636 * 89.00960 * 22 20 19 45 45 H 0.97001 * 119.99984 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4274 -1.2418 -0.7740 6 6 4.4479 -1.5598 -1.5951 7 8 4.3362 -1.3969 -2.7953 8 6 5.6972 -2.1039 -1.0396 9 6 6.0235 -2.2450 0.2842 10 7 7.2475 -2.7723 0.3154 11 7 7.6656 -2.9573 -0.8855 12 7 6.7789 -2.5793 -1.7385 13 6 6.8991 -2.6364 -3.1330 14 6 8.0734 -2.2220 -3.7476 15 6 8.1891 -2.2800 -5.1226 16 6 7.1374 -2.7506 -5.8872 17 6 5.9650 -3.1596 -5.2785 18 6 5.8450 -3.1090 -3.9036 19 6 3.4666 -1.2784 0.6952 20 6 2.0869 -0.8077 1.2020 21 1 1.4464 -1.6616 1.4228 22 7 2.2294 0.0497 2.3813 23 6 2.2077 -0.5011 3.6348 24 1 2.1718 -1.5739 3.7528 25 6 2.2318 0.3198 4.7540 26 7 2.2759 1.6273 4.6104 27 14 2.2029 -0.4315 6.4641 28 1 2.1541 -1.9115 6.3537 29 1 3.4274 -0.0298 7.2020 30 1 1.0038 0.0497 7.1959 31 1 -0.3634 -1.0267 0.0435 32 1 -0.3635 0.5511 0.8674 33 1 -0.3634 0.4756 -0.9109 34 1 2.1553 -0.1713 -2.0838 35 1 1.4528 -1.6703 -1.4044 36 1 5.4118 -1.9786 1.1335 37 1 8.8957 -1.8554 -3.1509 38 1 9.1022 -1.9582 -5.6012 39 1 7.2301 -2.7947 -6.9624 40 1 5.1438 -3.5228 -5.8787 41 1 4.9306 -3.4324 -3.4285 42 1 3.6616 -2.2953 1.0357 43 1 4.2430 -0.6071 1.0622 44 1 2.3389 1.0075 2.2741 45 1 2.2924 2.2009 5.3924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939221846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = 127.442594 kcal Electronic energy + Delta-G solvation = -29499.147903 eV Core-core repulsion = 25520.054635 eV Total energy + Delta-G solvation = -3979.093268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.58259 -39.94058 -39.49551 -37.71559 -34.85169 -34.18990 -32.97366 -31.63224 -31.12437 -30.69408 -30.14358 -27.80792 -26.67289 -24.70205 -24.21810 -23.68338 -22.79270 -21.81526 -21.40219 -20.09854 -19.96388 -18.12078 -17.24510 -17.22798 -16.85961 -16.61293 -16.04682 -15.55581 -15.24232 -15.03719 -14.63238 -14.33356 -14.14130 -13.81710 -13.67190 -13.31038 -13.28005 -13.14417 -12.75857 -12.57423 -12.29372 -12.15737 -12.05380 -11.68026 -11.60114 -11.39816 -11.21689 -11.05691 -10.80913 -10.78273 -10.70355 -10.34039 -10.20051 -10.05853 -9.81856 -9.59575 -9.28171 -9.07466 -8.97593 -8.59598 -7.17962 -5.92181 -3.24407 0.34786 1.02595 1.21148 1.87075 2.24439 2.92454 3.01148 3.35555 3.36194 3.42916 3.44676 4.17069 4.36255 4.47343 4.53965 4.55296 4.73489 4.79010 4.85966 4.95484 4.99700 5.03158 5.10631 5.19881 5.35521 5.44450 5.50272 5.58807 5.63075 5.69796 5.75911 5.85618 5.88571 5.93561 6.01852 6.06726 6.09669 6.11653 6.18518 6.27926 6.33866 6.34811 6.52257 6.66107 6.72679 7.41645 7.58409 7.93231 8.22968 8.24926 9.37355 9.89083 10.23858 11.29274 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.002933 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.646075 B = 9543.681509 C =10881.619739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.602 3.398 7 O -0.539 6.539 8 C -0.063 4.063 9 C 0.003 3.997 10 N -0.266 5.266 11 N -0.056 5.056 12 N -0.214 5.214 13 C 0.107 3.893 14 C -0.090 4.090 15 C -0.116 4.116 16 C -0.100 4.100 17 C -0.110 4.110 18 C -0.055 4.055 19 C 0.055 3.945 20 C 0.178 3.822 21 H 0.073 0.927 22 N -0.709 5.709 23 C -0.253 4.253 24 H 0.074 0.926 25 C -0.005 4.005 26 N -0.926 5.926 27 Si 0.907 3.093 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.216 0.784 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.620 -7.775 -19.880 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.104 0.896 4 C -0.005 4.005 5 N -0.325 5.325 6 C 0.388 3.612 7 O -0.417 6.417 8 C -0.194 4.194 9 C -0.155 4.155 10 N -0.129 5.129 11 N -0.035 5.035 12 N -0.005 5.005 13 C 0.018 3.982 14 C -0.109 4.109 15 C -0.135 4.135 16 C -0.119 4.119 17 C -0.129 4.129 18 C -0.076 4.076 19 C -0.071 4.071 20 C 0.066 3.934 21 H 0.091 0.909 22 N -0.348 5.348 23 C -0.384 4.384 24 H 0.092 0.908 25 C -0.202 4.202 26 N -0.573 5.573 27 Si 0.737 3.263 28 H -0.204 1.204 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.232 0.768 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.222 0.778 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.984 -8.392 -20.110 22.597 hybrid contribution -0.844 0.494 0.986 1.389 sum 5.139 -7.898 -19.124 21.320 Atomic orbital electron populations 1.21594 0.93566 1.01932 1.01930 1.22685 0.96575 0.99889 0.94329 0.89640 1.22365 0.81295 0.98516 0.98306 1.48128 1.11662 1.64487 1.08191 1.16222 0.80954 0.78618 0.85382 1.90829 1.81658 1.55386 1.13856 1.21992 0.93868 1.11160 0.92399 1.24803 0.94481 1.00054 0.96194 1.74954 1.10837 1.15585 1.11509 1.78365 1.14668 1.16841 0.93615 1.44714 1.10757 1.38570 1.06474 1.17521 0.97718 1.05914 0.77094 1.21029 0.96046 0.98413 0.95458 1.21015 0.99649 1.00338 0.92466 1.21354 0.93080 0.97027 1.00415 1.21012 0.98198 1.00288 0.93384 1.21025 0.96743 0.95655 0.94143 1.23862 1.04367 1.01649 0.77214 1.21249 0.91087 0.94098 0.87011 0.90938 1.42367 1.86128 1.06213 1.00108 1.19271 1.44205 0.91898 0.82998 0.90804 1.24791 1.02002 0.95305 0.98074 1.69669 1.56408 1.02088 1.29129 0.86137 0.77285 0.78310 0.84531 1.20355 1.21700 1.21770 0.92721 0.91215 0.93145 0.90419 0.91047 0.76765 0.84823 0.84749 0.85133 0.84778 0.84995 0.91248 0.89992 0.77826 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.30 37.15 0.35 -1.33 16 2 C -0.11 -1.61 3.27 -88.47 -0.29 -1.90 16 3 H 0.09 1.30 8.01 -51.93 -0.42 0.88 16 4 C 0.12 1.52 6.40 -2.53 -0.02 1.50 16 5 N -0.59 -8.57 3.33 -171.89 -0.57 -9.14 16 6 C 0.60 9.34 7.47 -12.64 -0.09 9.24 16 7 O -0.54 -8.94 13.46 5.25 0.07 -8.87 16 8 C -0.06 -0.97 6.76 -82.23 -0.56 -1.53 16 9 C 0.00 0.05 10.52 -17.33 -0.18 -0.13 16 10 N -0.27 -4.45 12.34 30.48 0.38 -4.08 16 11 N -0.06 -0.91 12.95 60.35 0.78 -0.13 16 12 N -0.21 -3.26 3.48 -7.21 -0.03 -3.29 16 13 C 0.11 1.43 5.87 -83.62 -0.49 0.94 16 14 C -0.09 -1.00 9.82 -39.40 -0.39 -1.38 16 15 C -0.12 -0.98 10.04 -39.61 -0.40 -1.38 16 16 C -0.10 -0.79 10.04 -39.55 -0.40 -1.19 16 17 C -0.11 -1.03 10.04 -39.61 -0.40 -1.43 16 18 C -0.06 -0.67 7.44 -39.40 -0.29 -0.97 16 19 C 0.05 0.83 4.77 -3.06 -0.01 0.82 16 20 C 0.18 2.98 3.08 -66.09 -0.20 2.78 16 21 H 0.07 1.22 7.96 -51.93 -0.41 0.80 16 22 N -0.71 -15.46 5.15 -51.65 -0.27 -15.73 16 23 C -0.25 -6.29 9.96 -15.06 -0.15 -6.44 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 26 N -0.93 -26.12 13.06 55.49 0.72 -25.40 16 27 Si 0.91 21.08 29.55 -169.99 -5.02 16.06 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 31 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.00 7.98 -51.93 -0.41 0.59 16 35 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 36 H 0.22 3.05 4.62 -52.49 -0.24 2.81 16 37 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 1.69 6.80 -52.49 -0.36 1.34 16 42 H 0.07 0.99 6.88 -51.93 -0.36 0.63 16 43 H 0.08 1.35 6.95 -51.93 -0.36 0.99 16 44 H 0.39 9.18 7.77 -40.82 -0.32 8.87 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -30.18 372.73 -7.74 -37.92 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.80 Total: 9.65 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.62 Total: -2.62 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 1.02 Total: -57.76 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.07 Total: -8.87 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.18 -7.74 -37.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939221846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.362 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds