Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 110.88439 * 2 1 4 4 C 1.54909 * 111.00696 * 236.11929 * 2 1 3 5 5 N 1.47418 * 104.82850 * 204.87695 * 4 2 1 6 6 C 1.34780 * 125.64334 * 204.08669 * 5 4 2 7 7 O 1.21627 * 120.00169 * 5.86761 * 6 5 4 8 8 C 1.47153 * 119.99907 * 185.86279 * 6 5 4 9 9 C 1.37071 * 127.21326 * 354.25254 * 8 6 5 10 10 N 1.33310 * 106.37521 * 180.25616 * 9 8 6 11 11 N 1.28497 * 109.49931 * 359.76268 * 10 9 8 12 12 N 1.28720 * 110.66876 * 359.97438 * 11 10 9 13 13 C 1.40084 * 126.06052 * 179.97438 * 12 11 10 14 14 C 1.38862 * 120.06570 * 315.20228 * 13 12 11 15 15 C 1.38112 * 119.93132 * 179.97438 * 14 13 12 16 16 C 1.38287 * 120.06682 * 359.97438 * 15 14 13 17 17 C 1.38281 * 120.13919 * 0.25849 * 16 15 14 18 18 C 1.38113 * 120.07006 * 359.48532 * 17 16 15 19 19 C 1.47021 * 108.70747 * 24.35843 * 5 4 2 20 20 C 1.54333 * 107.26421 * 358.57937 * 19 5 4 21 21 H 1.09005 * 110.66366 * 96.52681 * 20 19 5 22 22 N 1.46495 * 110.85002 * 219.67370 * 20 19 5 23 23 C 1.36937 * 119.99988 * 269.00162 * 22 20 19 24 24 H 1.07992 * 120.00368 * 5.29982 * 23 22 20 25 25 C 1.38814 * 119.99714 * 185.30262 * 23 22 20 26 26 N 1.31619 * 120.00184 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00044 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46892 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47363 * 119.99666 * 27 25 23 30 30 H 1.48493 * 109.47014 * 239.99918 * 27 25 23 31 31 H 1.08999 * 109.47517 * 182.42739 * 1 2 3 32 32 H 1.09007 * 109.47651 * 302.42786 * 1 2 3 33 33 H 1.09000 * 109.47483 * 62.42945 * 1 2 3 34 34 H 1.08996 * 110.36280 * 86.03759 * 4 2 1 35 35 H 1.09004 * 110.45624 * 323.76142 * 4 2 1 36 36 H 1.08001 * 126.81439 * 0.05365 * 9 8 6 37 37 H 1.08007 * 120.03950 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.96849 * 180.02562 * 15 14 13 39 39 H 1.08005 * 119.93028 * 179.97438 * 16 15 14 40 40 H 1.08001 * 119.96644 * 179.74530 * 17 16 15 41 41 H 1.07994 * 120.03779 * 180.25564 * 18 17 16 42 42 H 1.08998 * 109.88309 * 118.12919 * 19 5 4 43 43 H 1.08998 * 109.88091 * 239.29018 * 19 5 4 44 44 H 0.97001 * 119.99636 * 89.00960 * 22 20 19 45 45 H 0.97001 * 119.99984 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4274 -1.2418 -0.7740 6 6 4.4479 -1.5598 -1.5951 7 8 4.3362 -1.3969 -2.7953 8 6 5.6972 -2.1039 -1.0396 9 6 6.0235 -2.2450 0.2842 10 7 7.2475 -2.7723 0.3154 11 7 7.6656 -2.9573 -0.8855 12 7 6.7789 -2.5793 -1.7385 13 6 6.8991 -2.6364 -3.1330 14 6 8.0734 -2.2220 -3.7476 15 6 8.1891 -2.2800 -5.1226 16 6 7.1374 -2.7506 -5.8872 17 6 5.9650 -3.1596 -5.2785 18 6 5.8450 -3.1090 -3.9036 19 6 3.4666 -1.2784 0.6952 20 6 2.0869 -0.8077 1.2020 21 1 1.4464 -1.6616 1.4228 22 7 2.2294 0.0497 2.3813 23 6 2.2077 -0.5011 3.6348 24 1 2.1718 -1.5739 3.7528 25 6 2.2318 0.3198 4.7540 26 7 2.2759 1.6273 4.6104 27 14 2.2029 -0.4315 6.4641 28 1 2.1541 -1.9115 6.3537 29 1 3.4274 -0.0298 7.2020 30 1 1.0038 0.0497 7.1959 31 1 -0.3634 -1.0267 0.0435 32 1 -0.3635 0.5511 0.8674 33 1 -0.3634 0.4756 -0.9109 34 1 2.1553 -0.1713 -2.0838 35 1 1.4528 -1.6703 -1.4044 36 1 5.4118 -1.9786 1.1335 37 1 8.8957 -1.8554 -3.1509 38 1 9.1022 -1.9582 -5.6012 39 1 7.2301 -2.7947 -6.9624 40 1 5.1438 -3.5228 -5.8787 41 1 4.9306 -3.4324 -3.4285 42 1 3.6616 -2.2953 1.0357 43 1 4.2430 -0.6071 1.0622 44 1 2.3389 1.0075 2.2741 45 1 2.2924 2.2009 5.3924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939221846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 109.103652 kcal Electronic energy + Delta-G solvation = -29499.943139 eV Core-core repulsion = 25520.054635 eV Total energy + Delta-G solvation = -3979.888504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.76235 -41.17397 -40.30927 -38.98421 -36.04723 -35.68194 -34.29412 -32.88505 -32.31724 -31.90319 -31.04290 -29.28979 -27.78748 -26.11939 -25.46012 -24.88486 -23.80084 -22.85620 -22.67868 -21.37912 -21.00580 -19.21486 -19.06291 -18.45438 -17.99907 -17.39277 -17.26936 -16.93077 -16.42947 -16.11536 -15.85061 -15.55671 -15.35145 -15.13608 -14.75313 -14.64106 -14.42545 -14.12276 -14.04320 -13.76208 -13.49393 -13.34136 -13.01074 -12.90627 -12.85716 -12.79622 -12.47855 -12.44605 -12.14570 -12.08836 -12.01438 -11.80727 -11.67852 -11.49578 -11.30915 -10.91677 -10.81542 -10.06371 -9.83949 -9.78652 -9.03117 -7.92207 -5.21812 -0.68986 0.22962 0.29983 0.78671 1.02090 1.51340 1.53764 1.61550 1.76016 1.80237 2.58288 2.59299 2.97853 3.24466 3.39266 3.57818 3.61798 3.73104 3.77290 3.83091 3.85406 4.02071 4.12914 4.24082 4.31067 4.32850 4.38603 4.45464 4.48380 4.60052 4.68652 4.70760 4.86097 4.87500 4.91070 5.04442 5.14165 5.17597 5.19066 5.22171 5.36803 5.40003 5.41160 5.51666 5.60202 5.84962 6.18043 6.29491 6.72087 7.01935 7.37300 8.08428 8.31492 9.30601 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.002933 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.646075 B = 9543.681509 C =10881.619739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 H 0.071 0.929 4 C 0.122 3.878 5 N -0.590 5.590 6 C 0.605 3.395 7 O -0.548 6.548 8 C -0.073 4.073 9 C 0.003 3.997 10 N -0.289 5.289 11 N -0.068 5.068 12 N -0.205 5.205 13 C 0.067 3.933 14 C -0.103 4.103 15 C -0.110 4.110 16 C -0.087 4.087 17 C -0.111 4.111 18 C -0.072 4.072 19 C 0.066 3.934 20 C 0.173 3.827 21 H 0.079 0.921 22 N -0.720 5.720 23 C -0.236 4.236 24 H 0.084 0.916 25 C -0.068 4.068 26 N -0.966 5.966 27 Si 0.963 3.037 28 H -0.263 1.263 29 H -0.300 1.300 30 H -0.298 1.298 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.223 0.777 37 H 0.131 0.869 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.375 0.625 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 -9.119 -22.810 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.126 4.126 3 H 0.090 0.910 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.391 3.609 7 O -0.427 6.427 8 C -0.205 4.205 9 C -0.157 4.157 10 N -0.152 5.152 11 N -0.047 5.047 12 N 0.004 4.996 13 C -0.022 4.022 14 C -0.122 4.122 15 C -0.128 4.128 16 C -0.105 4.105 17 C -0.130 4.130 18 C -0.092 4.092 19 C -0.059 4.059 20 C 0.062 3.938 21 H 0.097 0.903 22 N -0.358 5.358 23 C -0.368 4.368 24 H 0.101 0.899 25 C -0.261 4.261 26 N -0.616 5.616 27 Si 0.793 3.207 28 H -0.187 1.187 29 H -0.228 1.228 30 H -0.225 1.225 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.239 0.761 37 H 0.149 0.851 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.176 0.824 41 H 0.135 0.865 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.208 0.792 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.815 -9.794 -23.083 25.740 hybrid contribution -0.763 0.861 1.656 2.016 sum 5.052 -8.933 -21.427 23.758 Atomic orbital electron populations 1.21551 0.92161 1.02713 1.02034 1.22580 0.97641 0.98888 0.93444 0.91012 1.22454 0.80565 0.99252 0.97656 1.48094 1.12131 1.64282 1.07643 1.16164 0.80941 0.78543 0.85255 1.90816 1.81787 1.55922 1.14174 1.22095 0.94297 1.11570 0.92515 1.24917 0.94264 0.99940 0.96538 1.74914 1.11553 1.16628 1.12065 1.78294 1.15251 1.17425 0.93710 1.44917 1.10164 1.37204 1.07320 1.17977 0.99392 1.08649 0.76185 1.21224 0.95273 0.98854 0.96893 1.21450 1.01105 0.98994 0.91244 1.21839 0.91802 0.94558 1.02320 1.21386 0.99675 0.99634 0.92293 1.21069 0.96000 0.96704 0.95436 1.23533 1.02695 1.01905 0.77788 1.21449 0.91974 0.93999 0.86359 0.90311 1.42481 1.86320 1.06158 1.00828 1.19651 1.40810 0.92251 0.84082 0.89854 1.25466 1.03677 0.95698 1.01236 1.69806 1.59284 1.03239 1.29244 0.85228 0.76247 0.78343 0.80876 1.18723 1.22756 1.22518 0.91349 0.93611 0.90781 0.89819 0.88784 0.76084 0.85083 0.81514 0.81228 0.82364 0.86458 0.90015 0.91457 0.79243 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.30 71.98 0.67 -2.31 16 2 C -0.11 -2.84 3.27 -9.40 -0.03 -2.87 16 3 H 0.07 2.16 8.01 -2.38 -0.02 2.14 16 4 C 0.12 2.90 6.40 86.86 0.56 3.46 16 5 N -0.59 -16.39 3.33 -815.98 -2.71 -19.10 16 6 C 0.60 18.41 7.47 86.58 0.65 19.05 16 7 O -0.55 -17.68 13.46 -4.12 -0.06 -17.74 16 8 C -0.07 -2.27 6.76 40.36 0.27 -2.00 16 9 C 0.00 0.09 10.52 84.19 0.89 0.97 16 10 N -0.29 -9.93 12.34 -57.47 -0.71 -10.64 16 11 N -0.07 -2.26 12.95 37.02 0.48 -1.78 16 12 N -0.20 -6.33 3.48 -176.72 -0.62 -6.95 16 13 C 0.07 1.77 5.87 38.12 0.22 2.00 16 14 C -0.10 -2.18 9.82 22.39 0.22 -1.96 16 15 C -0.11 -1.53 10.04 22.25 0.22 -1.30 16 16 C -0.09 -1.04 10.04 22.29 0.22 -0.82 16 17 C -0.11 -1.78 10.04 22.25 0.22 -1.56 16 18 C -0.07 -1.68 7.44 22.39 0.17 -1.52 16 19 C 0.07 1.97 4.77 86.73 0.41 2.38 16 20 C 0.17 5.62 3.08 46.18 0.14 5.76 16 21 H 0.08 2.50 7.96 -2.38 -0.02 2.48 16 22 N -0.72 -31.52 5.15 -317.33 -1.63 -33.15 16 23 C -0.24 -11.70 9.96 84.03 0.84 -10.86 16 24 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 25 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 26 N -0.97 -55.92 13.06 21.65 0.28 -55.63 16 27 Si 0.96 43.82 29.55 68.60 2.03 45.85 16 28 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 29 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 30 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 31 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.95 7.98 -2.39 -0.02 1.94 16 35 H 0.09 1.87 8.04 -2.39 -0.02 1.85 16 36 H 0.22 6.38 4.62 -2.91 -0.01 6.37 16 37 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.12 3.01 6.80 -2.91 -0.02 2.99 16 42 H 0.08 2.24 6.88 -2.39 -0.02 2.23 16 43 H 0.07 2.24 6.95 -2.39 -0.02 2.22 16 44 H 0.38 18.21 7.77 -92.71 -0.72 17.49 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -66.81 372.73 3.52 -63.29 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.31 Total: 30.60 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.14 Total: 5.26 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -4.91 Total: -127.26 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.06 Total: -17.74 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -66.81 3.52 -63.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939221846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.392 kcal (2) G-P(sol) polarization free energy of solvation -66.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds