Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.64000 * 2 1 4 4 C 1.54330 * 110.85268 * 236.82765 * 2 1 3 5 5 N 1.47028 * 107.26399 * 219.67378 * 4 2 1 6 6 C 1.34778 * 125.64520 * 178.84514 * 5 4 2 7 7 O 1.21576 * 120.00034 * 3.43508 * 6 5 4 8 8 C 1.47669 * 119.99650 * 183.43050 * 6 5 4 9 9 C 1.39706 * 120.08261 * 332.58920 * 8 6 5 10 10 C 1.37728 * 119.91702 * 179.97438 * 9 8 6 11 11 C 1.39021 * 120.08693 * 0.25557 * 10 9 8 12 12 N 1.39921 * 119.92711 * 179.72454 * 11 10 9 13 13 C 1.36362 * 127.11196 * 359.68647 * 12 11 10 14 14 N 1.30502 * 107.19531 * 179.83861 * 13 12 11 15 15 N 1.28534 * 109.91966 * 0.43535 * 14 13 12 16 16 C 1.30507 * 109.92341 * 359.72410 * 15 14 13 17 17 C 1.39037 * 120.15859 * 359.48913 * 11 10 9 18 18 C 1.37732 * 120.07415 * 0.51043 * 17 11 10 19 19 C 1.47424 * 108.70142 * 358.58840 * 5 4 2 20 20 C 1.54907 * 104.83630 * 24.35451 * 19 5 4 21 21 H 1.08999 * 111.00135 * 81.06648 * 20 19 5 22 22 N 1.46505 * 111.00261 * 204.91818 * 20 19 5 23 23 C 1.36933 * 119.99906 * 273.54219 * 22 20 19 24 24 H 1.08001 * 120.00050 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00097 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00441 * 180.02562 * 25 23 22 27 27 Si 1.86808 * 119.99946 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.46684 * 90.00181 * 27 25 23 29 29 H 1.48497 * 109.47257 * 210.00208 * 27 25 23 30 30 H 1.48495 * 109.47063 * 330.00265 * 27 25 23 31 31 H 1.08993 * 109.47365 * 296.86708 * 1 2 3 32 32 H 1.09002 * 109.46937 * 56.86451 * 1 2 3 33 33 H 1.08993 * 109.46844 * 176.86212 * 1 2 3 34 34 H 1.08997 * 109.99151 * 100.20322 * 4 2 1 35 35 H 1.09000 * 109.78052 * 339.02824 * 4 2 1 36 36 H 1.08000 * 120.03619 * 0.02562 * 9 8 6 37 37 H 1.08007 * 119.95819 * 179.97438 * 10 9 8 38 38 H 1.07996 * 126.39996 * 359.96799 * 13 12 11 39 39 H 1.07997 * 126.40310 * 180.02562 * 16 15 14 40 40 H 1.07990 * 119.95944 * 180.25763 * 17 11 10 41 41 H 1.08001 * 120.03418 * 179.76411 * 18 17 11 42 42 H 1.09004 * 110.36462 * 143.19639 * 19 5 4 43 43 H 1.09004 * 110.36283 * 265.51122 * 19 5 4 44 44 H 0.96996 * 119.99957 * 93.54857 * 22 20 19 45 45 H 0.96998 * 120.00415 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0794 -0.7891 -1.2072 5 7 3.2446 -1.5520 -0.7360 6 6 3.9924 -2.3863 -1.4852 7 8 3.7607 -2.5100 -2.6723 8 6 5.0932 -3.1500 -0.8643 9 6 5.7416 -2.6492 0.2674 10 6 6.7675 -3.3646 0.8442 11 6 7.1617 -4.5809 0.2985 12 7 8.2082 -5.3021 0.8837 13 6 8.9399 -4.9482 1.9787 14 7 9.8077 -5.9003 2.1870 15 7 9.6749 -6.8167 1.2955 16 6 8.7113 -6.5014 0.4737 17 6 6.5153 -5.0850 -0.8245 18 6 5.4886 -4.3751 -1.4067 19 6 3.4632 -1.2485 0.6900 20 6 2.0789 -0.7932 1.2153 21 1 1.4451 -1.6510 1.4405 22 7 2.2214 0.0740 2.3875 23 6 2.3172 -0.4755 3.6381 24 1 2.2882 -1.5482 3.7603 25 6 2.4517 0.3461 4.7488 26 7 2.5444 -0.1820 5.9508 27 14 2.5026 2.2015 4.5374 28 1 1.1230 2.7460 4.6109 29 1 3.3292 2.8001 5.6160 30 1 3.0960 2.5331 3.2171 31 1 -0.3634 0.4644 0.9167 32 1 -0.3633 0.5618 -0.8606 33 1 -0.3633 -1.0261 -0.0563 34 1 2.3816 -0.1005 -1.9962 35 1 1.3157 -1.4715 -1.5802 36 1 5.4380 -1.7028 0.6899 37 1 7.2695 -2.9779 1.7188 38 1 8.8217 -4.0491 2.5652 39 1 8.3749 -7.0819 -0.3725 40 1 6.8215 -6.0322 -1.2433 41 1 4.9894 -4.7655 -2.2813 42 1 3.7960 -2.1404 1.2210 43 1 4.1932 -0.4464 0.7995 44 1 2.2477 1.0373 2.2777 45 1 2.6387 0.3921 6.7268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939307656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = 92.116294 kcal Electronic energy + Delta-G solvation = -28941.900143 eV Core-core repulsion = 24961.275012 eV Total energy + Delta-G solvation = -3980.625131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.32982 -41.68316 -40.07238 -38.91875 -36.10279 -35.95716 -34.11801 -32.99810 -32.53707 -31.54143 -31.15924 -29.54640 -27.63597 -26.02784 -25.33736 -24.76877 -23.46794 -22.53409 -22.24237 -21.56924 -20.93455 -19.71889 -19.48906 -18.44950 -17.57302 -17.27440 -17.13953 -16.76600 -16.49559 -16.19980 -15.77625 -15.51168 -15.21106 -15.15377 -14.89147 -14.77710 -14.57067 -14.37535 -14.28400 -14.07911 -13.83356 -13.43127 -13.16900 -12.97754 -12.92046 -12.68507 -12.36832 -12.33726 -12.16591 -12.00299 -11.92519 -11.77846 -11.61254 -11.38800 -11.21050 -10.93298 -10.64528 -10.25078 -9.85638 -9.64374 -9.30632 -7.98884 -5.34537 -0.67464 0.13674 0.82245 1.25450 1.42826 1.45536 1.52766 1.66943 1.73086 1.86204 2.51692 2.60703 3.18407 3.28640 3.31765 3.48362 3.57647 3.60749 3.68233 3.76276 3.82643 3.95447 4.05628 4.06534 4.16128 4.29592 4.38419 4.45804 4.49743 4.54278 4.67129 4.77424 4.82151 4.87899 4.90823 4.91909 5.05171 5.06755 5.10822 5.18066 5.23041 5.31915 5.42877 5.45588 5.80691 5.90119 6.23695 6.37012 6.96488 7.09917 7.51535 7.83070 8.02221 9.21703 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.003298 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.451849 B = 8488.192893 C =10998.894287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 H 0.092 0.908 4 C 0.117 3.883 5 N -0.606 5.606 6 C 0.569 3.431 7 O -0.574 6.574 8 C -0.144 4.144 9 C -0.071 4.071 10 C -0.133 4.133 11 C 0.147 3.853 12 N -0.432 5.432 13 C 0.168 3.832 14 N -0.334 5.334 15 N -0.336 5.336 16 C 0.173 3.827 17 C -0.125 4.125 18 C -0.038 4.038 19 C 0.076 3.924 20 C 0.172 3.828 21 H 0.062 0.938 22 N -0.734 5.734 23 C -0.229 4.229 24 H 0.062 0.938 25 C -0.054 4.054 26 N -0.980 5.980 27 Si 0.946 3.054 28 H -0.283 1.283 29 H -0.303 1.303 30 H -0.245 1.245 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.252 0.748 39 H 0.264 0.736 40 H 0.173 0.827 41 H 0.153 0.847 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.370 0.630 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 -4.757 -17.429 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 H 0.110 0.890 4 C -0.005 4.005 5 N -0.337 5.337 6 C 0.360 3.640 7 O -0.455 6.455 8 C -0.147 4.147 9 C -0.090 4.090 10 C -0.153 4.153 11 C 0.054 3.946 12 N -0.119 5.119 13 C -0.119 4.119 14 N -0.170 5.170 15 N -0.171 5.171 16 C -0.114 4.114 17 C -0.144 4.144 18 C -0.058 4.058 19 C -0.050 4.050 20 C 0.062 3.938 21 H 0.080 0.920 22 N -0.376 5.376 23 C -0.360 4.360 24 H 0.080 0.920 25 C -0.247 4.247 26 N -0.630 5.630 27 Si 0.774 3.226 28 H -0.209 1.209 29 H -0.230 1.230 30 H -0.169 1.169 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.268 0.732 39 H 0.280 0.720 40 H 0.191 0.809 41 H 0.170 0.830 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.204 0.796 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.914 -5.858 -17.226 19.132 hybrid contribution -0.970 1.839 0.188 2.087 sum 4.944 -4.020 -17.038 18.191 Atomic orbital electron populations 1.21676 0.92567 1.02452 1.02467 1.22469 0.97605 0.99600 0.92779 0.89000 1.22078 0.87099 0.94583 0.96739 1.48398 1.30129 1.43298 1.11894 1.18162 0.81770 0.78766 0.85319 1.90756 1.71587 1.67290 1.15906 1.19983 0.98684 0.97746 0.98335 1.21868 0.93544 1.00775 0.92801 1.21045 0.98775 0.93427 1.02006 1.18034 0.88902 0.92574 0.95116 1.44381 1.26252 1.17850 1.23372 1.27451 0.91190 1.02905 0.90338 1.74181 1.21797 1.00934 1.20091 1.74159 1.17442 1.21911 1.03627 1.27585 0.94228 0.86698 1.02855 1.21066 0.96451 1.02302 0.94599 1.21199 0.94455 0.91693 0.98414 1.23541 1.01075 1.01071 0.79269 1.21503 0.93053 0.93476 0.85781 0.91982 1.42534 1.88690 1.04518 1.01905 1.18953 1.40870 0.92664 0.83483 0.92047 1.25396 1.02434 1.02083 0.94737 1.69867 1.58762 1.35910 0.98500 0.85551 0.77678 0.81348 0.78010 1.20924 1.22990 1.16914 0.92815 0.90518 0.92346 0.90553 0.90716 0.82983 0.82513 0.73242 0.72036 0.80933 0.82957 0.90176 0.90193 0.79629 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.16 71.98 0.66 -2.17 16 2 C -0.10 -2.45 3.16 -9.60 -0.03 -2.48 16 3 H 0.09 2.05 7.99 -2.39 -0.02 2.03 16 4 C 0.12 2.67 6.48 86.73 0.56 3.23 16 5 N -0.61 -15.36 3.33 -815.36 -2.71 -18.07 16 6 C 0.57 15.21 7.63 86.73 0.66 15.87 16 7 O -0.57 -18.32 16.98 -3.96 -0.07 -18.39 16 8 C -0.14 -3.12 5.70 -20.08 -0.11 -3.23 16 9 C -0.07 -1.40 7.92 22.50 0.18 -1.22 16 10 C -0.13 -2.21 9.46 22.34 0.21 -2.00 16 11 C 0.15 2.28 6.65 38.23 0.25 2.53 16 12 N -0.43 -7.20 2.99 -353.75 -1.06 -8.25 16 13 C 0.17 3.19 12.06 179.84 2.17 5.36 16 14 N -0.33 -8.72 12.19 -59.46 -0.73 -9.44 16 15 N -0.34 -8.33 12.19 -59.46 -0.73 -9.06 16 16 C 0.17 2.81 12.06 179.84 2.17 4.98 16 17 C -0.12 -1.60 9.47 22.34 0.21 -1.39 16 18 C -0.04 -0.65 9.58 22.50 0.22 -0.43 16 19 C 0.08 2.02 4.71 86.85 0.41 2.43 16 20 C 0.17 5.23 3.14 46.38 0.15 5.38 16 21 H 0.06 2.07 8.04 -2.39 -0.02 2.05 16 22 N -0.73 -28.30 5.08 -316.37 -1.61 -29.91 16 23 C -0.23 -11.36 10.47 84.03 0.88 -10.48 16 24 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 25 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 26 N -0.98 -58.40 13.97 21.65 0.30 -58.10 16 27 Si 0.95 40.94 27.74 68.60 1.90 42.85 16 28 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 29 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 30 H -0.24 -9.18 6.52 99.48 0.65 -8.53 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.21 8.07 -2.39 -0.02 1.19 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.66 7.77 -2.39 -0.02 1.64 16 36 H 0.15 3.10 4.57 -2.91 -0.01 3.09 16 37 H 0.16 2.02 6.84 -2.91 -0.02 2.00 16 38 H 0.25 2.89 7.17 -2.91 -0.02 2.87 16 39 H 0.26 1.50 7.17 -2.91 -0.02 1.48 16 40 H 0.17 0.95 6.84 -2.92 -0.02 0.93 16 41 H 0.15 2.36 7.88 -2.91 -0.02 2.34 16 42 H 0.08 2.19 6.16 -2.38 -0.01 2.18 16 43 H 0.08 2.08 7.28 -2.38 -0.02 2.07 16 44 H 0.37 13.68 5.57 -92.71 -0.52 13.16 16 45 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -73.76 370.51 4.83 -68.94 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.47 Total: 25.51 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 9.05 Total: 13.93 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -6.53 Total: -132.84 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.07 Total: -18.39 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.90 Total: 42.85 kcal Total: -73.76 4.83 -68.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939307656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.053 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds