Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.34774 * 125.64502 * 178.97339 * 5 4 2 7 7 O 1.21514 * 120.00158 * 0.02562 * 6 5 4 8 8 C 1.48185 * 119.99838 * 179.97438 * 6 5 4 9 9 C 1.39119 * 119.69197 * 179.72694 * 8 6 5 10 10 C 1.39277 * 118.97305 * 179.71238 * 9 8 6 11 11 N 1.39966 * 120.82199 * 180.28623 * 10 9 8 12 12 C 1.37154 * 126.48437 * 180.27776 * 11 10 9 13 13 C 1.34619 * 106.83131 * 179.97438 * 12 11 10 14 14 N 1.34153 * 108.21256 * 0.02562 * 13 12 11 15 15 C 1.30487 * 109.36437 * 359.74262 * 14 13 12 16 16 C 1.39268 * 118.35913 * 0.55216 * 10 9 8 17 17 C 1.38343 * 119.27617 * 359.73566 * 16 10 9 18 18 N 1.31596 * 120.97836 * 359.97098 * 17 16 10 19 19 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 20 20 C 1.54904 * 104.83620 * 24.13268 * 19 5 4 21 21 H 1.08999 * 111.00765 * 81.06058 * 20 19 5 22 22 N 1.46496 * 111.00742 * 204.91491 * 20 19 5 23 23 C 1.36939 * 120.00136 * 267.19421 * 22 20 19 24 24 H 1.07996 * 119.99922 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00396 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99697 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00349 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47105 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47572 * 119.99759 * 27 25 23 30 30 H 1.48501 * 109.47119 * 240.00033 * 27 25 23 31 31 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 32 32 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 33 33 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 34 34 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 35 35 H 1.08998 * 109.88102 * 99.87410 * 4 2 1 36 36 H 1.08002 * 120.51423 * 359.97438 * 9 8 6 37 37 H 1.07997 * 126.58629 * 359.95274 * 12 11 10 38 38 H 1.08004 * 125.89835 * 180.02562 * 13 12 11 39 39 H 1.07996 * 125.72219 * 180.25194 * 15 14 13 40 40 H 1.08003 * 120.36496 * 179.70282 * 16 10 9 41 41 H 1.08001 * 119.51259 * 180.02562 * 17 16 10 42 42 H 1.09007 * 110.36440 * 142.96663 * 19 5 4 43 43 H 1.08996 * 110.37385 * 265.17849 * 19 5 4 44 44 H 0.97003 * 120.00082 * 87.18975 * 22 20 19 45 45 H 0.97005 * 119.99963 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 3.9923 -2.3811 -1.4936 7 8 3.7192 -2.5517 -2.6653 8 6 5.1482 -3.0866 -0.8919 9 6 5.9123 -3.9480 -1.6726 10 6 6.9990 -4.5987 -1.0934 11 7 7.7975 -5.4689 -1.8445 12 6 8.8861 -6.1709 -1.3937 13 6 9.3531 -6.8795 -2.4387 14 7 8.5758 -6.6213 -3.5012 15 6 7.6376 -5.7821 -3.1573 16 6 7.2682 -4.3664 0.2531 17 6 6.4582 -3.5000 0.9653 18 7 5.4417 -2.8950 0.3889 19 6 3.4633 -1.2508 0.6855 20 6 2.0790 -0.7974 1.2125 21 1 1.4452 -1.6559 1.4348 22 7 2.2214 0.0657 2.3876 23 6 2.1867 -0.4773 3.6443 24 1 2.0539 -1.5417 3.7691 25 6 2.3221 0.3405 4.7577 26 7 2.4845 1.6377 4.6056 27 14 2.2755 -0.4003 6.4719 28 1 2.0846 -1.8695 6.3712 29 1 3.5544 -0.1136 7.1701 30 1 1.1498 0.1934 7.2372 31 1 -0.3633 -1.0272 0.0303 32 1 -0.3633 0.4873 -0.9048 33 1 -0.3634 0.5399 0.8744 34 1 1.3130 -1.4732 -1.5799 35 1 2.3716 -0.0992 -1.9989 36 1 5.6692 -4.1064 -2.7129 37 1 9.2912 -6.1574 -0.3927 38 1 10.2062 -7.5417 -2.4243 39 1 6.8651 -5.3989 -3.8074 40 1 8.0999 -4.8577 0.7363 41 1 6.6638 -3.3168 2.0096 42 1 3.7960 -2.1446 1.2135 43 1 4.1946 -0.4504 0.7979 44 1 2.3404 1.0219 2.2755 45 1 2.5795 2.2092 5.3837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939464224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = 82.180702 kcal Electronic energy + Delta-G solvation = -28849.135764 eV Core-core repulsion = 24868.079794 eV Total energy + Delta-G solvation = -3981.055971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.47509 -41.81943 -40.46475 -38.92075 -36.13637 -35.80203 -33.97634 -32.84024 -32.41872 -31.64689 -30.52289 -29.12471 -27.88284 -25.98601 -25.47261 -25.15911 -23.26071 -22.42041 -22.02967 -21.35171 -20.99933 -19.47957 -19.10186 -18.22567 -17.55933 -17.16584 -16.92353 -16.80630 -16.69249 -16.31515 -15.78885 -15.52330 -15.35054 -15.20409 -14.94397 -14.75109 -14.55387 -14.42710 -14.33232 -14.25138 -13.96310 -13.34951 -13.03854 -13.01807 -12.85984 -12.82900 -12.41957 -12.21066 -12.09905 -11.97965 -11.70072 -11.54637 -11.31711 -11.27175 -11.01101 -10.53807 -10.47592 -10.20890 -9.68706 -9.62626 -8.97428 -7.89841 -5.18676 -0.67352 -0.37001 1.09142 1.34183 1.52043 1.53420 1.61442 1.62501 1.83853 2.02243 2.59787 2.65894 2.89719 3.27553 3.41357 3.42547 3.56599 3.62021 3.76129 3.78807 3.85803 3.97439 4.04635 4.21411 4.33540 4.44092 4.44952 4.47460 4.50155 4.51192 4.65531 4.66408 4.68592 4.93756 5.01681 5.10056 5.16693 5.18070 5.20663 5.34993 5.43305 5.48737 5.59822 5.63677 6.00687 6.30441 6.36229 6.55022 6.86451 6.94562 7.38741 8.10026 8.35040 9.33332 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.002787 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.096634 B =10043.818444 C =11950.456851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 H 0.078 0.922 4 C 0.116 3.884 5 N -0.591 5.591 6 C 0.574 3.426 7 O -0.568 6.568 8 C 0.096 3.904 9 C -0.132 4.132 10 C 0.171 3.829 11 N -0.418 5.418 12 C -0.044 4.044 13 C -0.039 4.039 14 N -0.514 5.514 15 C 0.182 3.818 16 C -0.146 4.146 17 C 0.125 3.875 18 N -0.474 5.474 19 C 0.096 3.904 20 C 0.167 3.833 21 H 0.063 0.937 22 N -0.718 5.718 23 C -0.233 4.233 24 H 0.078 0.922 25 C -0.070 4.070 26 N -0.968 5.968 27 Si 0.967 3.033 28 H -0.265 1.265 29 H -0.295 1.295 30 H -0.299 1.299 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.157 0.843 37 H 0.218 0.782 38 H 0.198 0.802 39 H 0.225 0.775 40 H 0.187 0.813 41 H 0.200 0.800 42 H 0.099 0.901 43 H 0.052 0.948 44 H 0.376 0.624 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.379 -13.722 -10.667 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.321 5.321 6 C 0.361 3.639 7 O -0.448 6.448 8 C -0.042 4.042 9 C -0.155 4.155 10 C 0.069 3.931 11 N -0.098 5.098 12 C -0.173 4.173 13 C -0.183 4.183 14 N -0.232 5.232 15 C -0.099 4.099 16 C -0.167 4.167 17 C -0.034 4.034 18 N -0.186 5.186 19 C -0.029 4.029 20 C 0.056 3.944 21 H 0.081 0.919 22 N -0.356 5.356 23 C -0.365 4.365 24 H 0.095 0.905 25 C -0.263 4.263 26 N -0.618 5.618 27 Si 0.797 3.203 28 H -0.189 1.189 29 H -0.222 1.222 30 H -0.226 1.226 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.175 0.825 37 H 0.235 0.765 38 H 0.215 0.785 39 H 0.241 0.759 40 H 0.204 0.796 41 H 0.217 0.783 42 H 0.117 0.883 43 H 0.070 0.930 44 H 0.208 0.792 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.789 -13.719 -11.459 20.380 hybrid contribution 0.429 0.234 1.183 1.280 sum 10.218 -13.484 -10.276 19.795 Atomic orbital electron populations 1.21610 0.92588 1.02201 1.02119 1.22451 0.97546 0.99141 0.93465 0.90332 1.22118 0.87070 0.94599 0.96852 1.48374 1.29020 1.42034 1.12687 1.17773 0.82064 0.79159 0.84876 1.90741 1.71679 1.65967 1.16418 1.20721 0.95987 0.96843 0.90615 1.21698 0.94253 0.96940 1.02612 1.17966 0.91242 0.91757 0.92095 1.43286 1.23042 1.33021 1.10449 1.23454 0.91217 0.99194 1.03386 1.22919 1.02722 1.04211 0.88489 1.70358 1.06236 1.15608 1.30961 1.25812 1.01725 0.98936 0.83412 1.22494 1.02908 0.99991 0.91349 1.23428 0.87932 0.90114 1.01909 1.67987 1.17841 1.23007 1.09789 1.23419 0.99409 1.01781 0.78321 1.21606 0.93214 0.93262 0.86291 0.91917 1.42359 1.86367 1.06150 1.00737 1.19606 1.39850 0.92821 0.84181 0.90457 1.25461 1.03672 0.95837 1.01287 1.69814 1.58561 1.03987 1.29455 0.85164 0.76445 0.78106 0.80577 1.18928 1.22204 1.22650 0.92212 0.90739 0.93301 0.90330 0.90824 0.82521 0.76548 0.78502 0.75881 0.79565 0.78290 0.88280 0.93002 0.79161 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.13 71.98 0.66 -2.76 16 2 C -0.11 -3.21 3.19 -9.60 -0.03 -3.24 16 3 H 0.08 2.49 8.01 -2.39 -0.02 2.47 16 4 C 0.12 3.29 6.46 86.73 0.56 3.85 16 5 N -0.59 -18.65 3.33 -814.82 -2.71 -21.36 16 6 C 0.57 18.17 7.84 86.89 0.68 18.85 16 7 O -0.57 -19.83 16.65 -3.76 -0.06 -19.89 16 8 C 0.10 2.56 6.72 41.86 0.28 2.84 16 9 C -0.13 -2.86 9.06 22.73 0.21 -2.65 16 10 C 0.17 2.93 6.67 38.34 0.26 3.19 16 11 N -0.42 -6.88 2.99 -349.80 -1.04 -7.92 16 12 C -0.04 -0.56 10.89 83.03 0.90 0.35 16 13 C -0.04 -0.62 11.85 83.51 0.99 0.37 16 14 N -0.51 -11.01 11.24 -199.69 -2.25 -13.25 16 15 C 0.18 3.40 11.95 179.99 2.15 5.55 16 16 C -0.15 -1.89 9.55 22.54 0.22 -1.68 16 17 C 0.13 2.16 11.17 84.75 0.95 3.11 16 18 N -0.47 -12.06 6.59 -185.12 -1.22 -13.28 16 19 C 0.10 3.28 5.63 86.85 0.49 3.77 16 20 C 0.17 6.12 3.16 46.38 0.15 6.26 16 21 H 0.06 2.36 7.99 -2.39 -0.02 2.34 16 22 N -0.72 -33.20 5.24 -316.39 -1.66 -34.86 16 23 C -0.23 -11.94 9.96 84.03 0.84 -11.10 16 24 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 25 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 26 N -0.97 -56.31 13.06 21.65 0.28 -56.03 16 27 Si 0.97 43.67 29.55 68.60 2.03 45.70 16 28 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 29 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 30 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 31 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.08 2.09 7.82 -2.39 -0.02 2.07 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.16 3.20 6.49 -2.91 -0.02 3.18 16 37 H 0.22 0.88 7.23 -2.91 -0.02 0.86 16 38 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16 39 H 0.22 3.19 7.15 -2.91 -0.02 3.17 16 40 H 0.19 0.90 6.94 -2.91 -0.02 0.88 16 41 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.10 3.43 5.88 -2.38 -0.01 3.42 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.38 18.90 7.77 -92.71 -0.72 18.18 16 45 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 Total: -1.00 -70.53 376.93 3.44 -67.09 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.31 Total: 30.43 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 9.76 Total: 23.39 kcal Atomic # 7 Polarization: -138.11 SS G_CDS: -8.60 Total: -146.71 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -70.53 3.44 -67.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939464224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.270 kcal (2) G-P(sol) polarization free energy of solvation -70.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds