Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.77850 * 2 1 4 4 C 1.54372 * 110.75731 * 123.24053 * 2 1 3 5 5 N 1.47019 * 107.29168 * 140.50742 * 4 2 1 6 6 C 1.34772 * 125.65447 * 181.13076 * 5 4 2 7 7 O 1.21570 * 120.00204 * 174.29430 * 6 5 4 8 8 C 1.47713 * 119.99677 * 354.29927 * 6 5 4 9 9 C 1.39709 * 120.02853 * 7.06175 * 8 6 5 10 10 C 1.37661 * 119.97678 * 179.74531 * 9 8 6 11 11 C 1.39497 * 120.02644 * 0.56090 * 10 9 8 12 12 C 1.48291 * 119.97752 * 179.72102 * 11 10 9 13 13 N 1.34014 * 125.65353 * 179.66937 * 12 11 10 14 14 C 1.30647 * 109.78534 * 179.81750 * 13 12 11 15 15 N 1.34570 * 108.30388 * 0.43892 * 14 13 12 16 16 H 0.96999 * 126.74339 * 179.75551 * 15 14 13 17 17 N 1.31545 * 125.65366 * 359.97396 * 12 11 10 18 18 C 1.39504 * 120.04817 * 359.69053 * 11 10 9 19 19 C 1.37664 * 120.02412 * 0.03373 * 18 11 10 20 20 C 1.47434 * 108.70032 * 1.09530 * 5 4 2 21 21 C 1.54914 * 104.82916 * 335.87015 * 20 5 4 22 22 H 1.09000 * 111.00469 * 278.89392 * 21 20 5 23 23 N 1.46500 * 110.99746 * 155.08435 * 21 20 5 24 24 C 1.36939 * 120.00041 * 89.58612 * 23 21 20 25 25 H 1.07991 * 120.00146 * 359.97438 * 24 23 21 26 26 C 1.38818 * 119.99635 * 179.97438 * 24 23 21 27 27 N 1.31615 * 120.00144 * 359.97438 * 26 24 23 28 28 Si 1.86793 * 119.99513 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.47001 * 180.02562 * 28 26 24 30 30 H 1.48500 * 109.47346 * 60.00183 * 28 26 24 31 31 H 1.48503 * 109.47803 * 300.00124 * 28 26 24 32 32 H 1.09001 * 109.46546 * 183.23835 * 1 2 3 33 33 H 1.09000 * 109.47398 * 303.23717 * 1 2 3 34 34 H 1.08999 * 109.47064 * 63.24192 * 1 2 3 35 35 H 1.09007 * 109.84404 * 21.10314 * 4 2 1 36 36 H 1.08998 * 110.03352 * 260.02012 * 4 2 1 37 37 H 1.08002 * 120.00924 * 0.02906 * 9 8 6 38 38 H 1.08006 * 119.98968 * 180.29867 * 10 9 8 39 39 H 1.08001 * 125.84545 * 180.17888 * 14 13 12 40 40 H 1.07999 * 119.98564 * 179.97438 * 18 11 10 41 41 H 1.07997 * 120.01334 * 180.02562 * 19 18 11 42 42 H 1.09002 * 110.36805 * 217.03412 * 20 5 4 43 43 H 1.08998 * 110.46051 * 94.75247 * 20 5 4 44 44 H 0.97004 * 120.00197 * 269.57685 * 23 21 20 45 45 H 0.97002 * 120.00539 * 0.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0771 -0.7913 1.2073 5 7 3.2450 -1.5515 0.7386 6 6 3.9918 -2.3858 1.4886 7 8 4.8738 -3.0433 0.9712 8 6 3.7385 -2.5015 2.9392 9 6 2.6348 -1.8623 3.5094 10 6 2.3968 -1.9752 4.8606 11 6 3.2637 -2.7178 5.6624 12 6 3.0097 -2.8335 7.1188 13 7 3.7612 -3.5198 7.9907 14 6 3.2577 -3.4095 9.1912 15 7 2.1509 -2.6478 9.1170 16 1 1.5678 -2.3984 9.8509 17 7 2.0062 -2.2842 7.7682 18 6 4.3690 -3.3522 5.0951 19 6 4.6058 -3.2454 3.7432 20 6 3.4633 -1.2506 -0.6881 21 6 2.0790 -0.7955 -1.2137 22 1 1.4449 -1.6532 -1.4378 23 7 2.2216 0.0695 -2.3874 24 6 2.2522 -0.4783 -3.6421 25 1 2.1717 -1.5480 -3.7663 26 6 2.3868 0.3415 -4.7542 27 7 2.4844 1.6452 -4.6028 28 14 2.4293 -0.4059 -6.4656 29 1 2.5796 0.6740 -7.4738 30 1 1.1652 -1.1442 -6.7149 31 1 3.5777 -1.3419 -6.5688 32 1 -0.3632 -1.0261 0.0581 33 1 -0.3634 0.5633 0.8595 34 1 -0.3633 0.4627 -0.9176 35 1 1.3138 -1.4755 1.5779 36 1 2.3754 -0.1047 1.9996 37 1 1.9660 -1.2836 2.8895 38 1 1.5409 -1.4851 5.3008 39 1 3.6586 -3.8570 10.0887 40 1 5.0397 -3.9265 5.7169 41 1 5.4613 -3.7369 3.3041 42 1 3.7953 -2.1436 -1.2177 43 1 4.1940 -0.4497 -0.8011 44 1 2.2942 1.0304 -2.2759 45 1 2.4627 2.0334 -3.7141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939464604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = 95.722583 kcal Electronic energy + Delta-G solvation = -28359.428107 eV Core-core repulsion = 24378.959356 eV Total energy + Delta-G solvation = -3980.468751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.06822 -41.73425 -39.79086 -38.87172 -36.39570 -34.46588 -33.88058 -32.95130 -32.62761 -31.98071 -31.20148 -29.07608 -27.72729 -26.16982 -25.27097 -24.30944 -23.23901 -22.95294 -21.66931 -21.38225 -21.00014 -19.50660 -19.35713 -18.49819 -17.63689 -17.11309 -16.95490 -16.51851 -16.48497 -16.00209 -15.91262 -15.58575 -15.32776 -15.11676 -14.80547 -14.76329 -14.48167 -14.15308 -14.12504 -13.73742 -13.55022 -13.21944 -13.19869 -12.84083 -12.76143 -12.61518 -12.38909 -12.19205 -11.90725 -11.73211 -11.61078 -11.51940 -11.19158 -11.14961 -11.10939 -11.04823 -10.91966 -10.10070 -9.86585 -9.61564 -9.16941 -8.39998 -5.35881 -0.62763 0.32169 0.69112 1.51919 1.58772 1.67614 1.72874 1.78938 1.84360 2.07828 2.69718 2.83724 2.93838 3.28314 3.37271 3.41230 3.52607 3.72306 3.82861 3.90560 3.98198 4.04817 4.15217 4.21984 4.26521 4.31243 4.43591 4.46475 4.53134 4.64602 4.78780 4.83024 4.90725 4.96378 4.98852 5.06112 5.10307 5.12250 5.26896 5.28914 5.35698 5.36716 5.44374 5.60266 5.72669 6.22209 6.39360 6.49767 6.95339 6.99142 7.06030 7.95388 8.05250 9.11469 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.002045 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.364599 B =13686.418492 C =14474.019621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.106 4.106 3 H 0.083 0.917 4 C 0.095 3.905 5 N -0.605 5.605 6 C 0.561 3.439 7 O -0.586 6.586 8 C -0.127 4.127 9 C -0.117 4.117 10 C -0.087 4.087 11 C -0.002 4.002 12 C 0.248 3.752 13 N -0.570 5.570 14 C 0.282 3.718 15 N -0.471 5.471 16 H 0.461 0.539 17 N -0.324 5.324 18 C -0.082 4.082 19 C -0.072 4.072 20 C 0.092 3.908 21 C 0.176 3.824 22 H 0.061 0.939 23 N -0.730 5.730 24 C -0.335 4.335 25 H 0.063 0.937 26 C -0.097 4.097 27 N -0.971 5.971 28 Si 1.124 2.876 29 H -0.292 1.292 30 H -0.276 1.276 31 H -0.284 1.284 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.185 0.815 38 H 0.154 0.846 39 H 0.277 0.723 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.365 0.635 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 -8.030 33.817 35.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.126 4.126 3 H 0.102 0.898 4 C -0.026 4.026 5 N -0.337 5.337 6 C 0.353 3.647 7 O -0.468 6.468 8 C -0.131 4.131 9 C -0.134 4.134 10 C -0.107 4.107 11 C -0.005 4.005 12 C -0.032 4.032 13 N -0.299 5.299 14 C -0.016 4.016 15 N -0.191 5.191 16 H 0.311 0.689 17 N -0.154 5.154 18 C -0.102 4.102 19 C -0.091 4.091 20 C -0.035 4.035 21 C 0.066 3.934 22 H 0.079 0.921 23 N -0.371 5.371 24 C -0.466 4.466 25 H 0.081 0.919 26 C -0.289 4.289 27 N -0.618 5.618 28 Si 0.949 3.051 29 H -0.218 1.218 30 H -0.202 1.202 31 H -0.210 1.210 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.202 0.798 38 H 0.172 0.828 39 H 0.293 0.707 40 H 0.167 0.833 41 H 0.152 0.848 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.198 0.802 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.986 -8.069 31.524 32.784 hybrid contribution 0.197 0.018 1.873 1.884 sum -3.789 -8.052 33.397 34.563 Atomic orbital electron populations 1.21660 0.91867 1.02776 1.02486 1.22517 0.98009 0.99263 0.92772 0.89826 1.22935 0.87169 0.95303 0.97158 1.48363 1.30478 1.43740 1.11095 1.18509 0.80668 0.78392 0.87137 1.90745 1.34948 1.46416 1.74672 1.19922 0.99167 1.02777 0.91234 1.22856 0.96630 0.97879 0.96010 1.21329 0.99197 0.97437 0.92714 1.17902 0.96432 0.99127 0.86995 1.22316 0.90706 0.95292 0.94861 1.70505 1.32405 1.26213 1.00747 1.27100 0.84964 0.90918 0.98609 1.48110 1.23679 1.39741 1.07580 0.68904 1.78140 1.22903 1.24655 0.89746 1.21164 0.96718 0.98479 0.93839 1.21224 0.98571 0.96172 0.93119 1.23006 1.01122 0.99122 0.80204 1.21462 0.91915 0.93513 0.86552 0.92133 1.42364 1.88173 1.04854 1.01690 1.20328 1.46574 0.93522 0.86172 0.91852 1.27080 1.00206 0.95280 1.06360 1.70992 1.55533 1.11324 1.23982 0.82674 0.77058 0.74012 0.71390 1.21779 1.20162 1.20998 0.91700 0.89361 0.93977 0.87390 0.87516 0.79818 0.82799 0.70748 0.83252 0.84833 0.93641 0.93203 0.80184 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.16 71.98 0.66 -2.35 16 2 C -0.11 -2.90 3.19 -9.59 -0.03 -2.93 16 3 H 0.08 2.35 8.00 -2.39 -0.02 2.33 16 4 C 0.10 2.14 4.47 86.75 0.39 2.53 16 5 N -0.61 -19.30 3.33 -831.26 -2.77 -22.07 16 6 C 0.56 19.13 7.80 86.75 0.68 19.81 16 7 O -0.59 -24.91 16.59 -3.94 -0.07 -24.98 16 8 C -0.13 -3.34 5.88 -20.06 -0.12 -3.46 16 9 C -0.12 -2.29 8.59 22.49 0.19 -2.10 16 10 C -0.09 -1.59 9.66 22.44 0.22 -1.37 16 11 C 0.00 -0.03 5.88 -19.99 -0.12 -0.15 16 12 C 0.25 4.86 7.77 137.41 1.07 5.93 16 13 N -0.57 -9.51 10.81 -193.13 -2.09 -11.60 16 14 C 0.28 1.87 13.11 180.37 2.36 4.23 16 15 N -0.47 -3.50 7.44 -60.51 -0.45 -3.95 16 16 H 0.46 -0.34 8.96 -213.10 -1.91 -2.25 16 17 N -0.32 -5.51 12.42 -52.40 -0.65 -6.17 16 18 C -0.08 -1.74 9.67 22.44 0.22 -1.53 16 19 C -0.07 -1.78 9.58 22.49 0.22 -1.56 16 20 C 0.09 3.62 6.63 86.86 0.58 4.19 16 21 C 0.18 6.78 3.14 46.38 0.15 6.93 16 22 H 0.06 2.43 8.02 -2.39 -0.02 2.41 16 23 N -0.73 -35.52 5.26 -316.38 -1.66 -37.18 16 24 C -0.33 -18.61 9.97 84.03 0.84 -17.77 16 25 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 26 C -0.10 -5.61 5.50 84.86 0.47 -5.14 16 27 N -0.97 -59.90 13.70 21.65 0.30 -59.60 16 28 Si 1.12 52.30 29.92 68.60 2.05 54.35 16 29 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 30 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 31 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 32 H 0.06 1.37 8.06 -2.39 -0.02 1.35 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.11 1.86 6.36 -2.38 -0.02 1.84 16 36 H 0.11 1.83 6.73 -2.39 -0.02 1.82 16 37 H 0.19 2.83 2.72 -9.06 -0.02 2.81 16 38 H 0.15 2.25 7.82 -2.91 -0.02 2.23 16 39 H 0.28 -1.56 8.06 -2.91 -0.02 -1.58 16 40 H 0.15 2.84 7.82 -2.91 -0.02 2.82 16 41 H 0.13 3.44 7.66 -2.91 -0.02 3.41 16 42 H 0.04 2.03 7.98 -2.39 -0.02 2.01 16 43 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.37 18.31 6.57 -92.70 -0.61 17.70 16 45 H 0.25 15.00 6.77 -92.71 -0.63 14.37 16 Total: -1.00 -83.73 374.55 1.10 -82.64 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -1.33 Total: 23.29 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 7.76 Total: 5.25 kcal Atomic # 7 Polarization: -133.24 SS G_CDS: -7.32 Total: -140.56 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.07 Total: -24.98 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.05 Total: 54.35 kcal Total: -83.73 1.10 -82.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939464604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.360 kcal (2) G-P(sol) polarization free energy of solvation -83.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds