Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.90897 * 2 1 4 4 C 1.54904 * 111.00207 * 123.90146 * 2 1 3 5 5 N 1.47753 * 104.83879 * 155.17097 * 4 2 1 6 6 C 1.34774 * 125.82102 * 155.83023 * 5 4 2 7 7 O 1.21571 * 120.00475 * 354.21535 * 6 5 4 8 8 C 1.47720 * 119.99602 * 174.21796 * 6 5 4 9 9 C 1.39712 * 120.02489 * 6.99861 * 8 6 5 10 10 C 1.37668 * 119.96949 * 179.74025 * 9 8 6 11 11 C 1.39503 * 120.02865 * 0.53144 * 10 9 8 12 12 C 1.48282 * 119.97595 * 179.69852 * 11 10 9 13 13 N 1.34016 * 125.65633 * 179.71424 * 12 11 10 14 14 C 1.30635 * 109.78787 * 179.81724 * 13 12 11 15 15 N 1.34576 * 108.30609 * 0.44127 * 14 13 12 16 16 H 0.96998 * 126.74256 * 179.76796 * 15 14 13 17 17 N 1.31554 * 125.65244 * 0.02562 * 12 11 10 18 18 C 1.39497 * 120.04634 * 359.72194 * 11 10 9 19 19 C 1.37666 * 120.02893 * 0.02562 * 18 11 10 20 20 C 1.47016 * 108.52692 * 335.74747 * 5 4 2 21 21 C 1.54326 * 107.40442 * 1.18458 * 20 5 4 22 22 H 1.09000 * 110.72130 * 140.47658 * 21 20 5 23 23 N 1.46502 * 110.71854 * 263.74783 * 21 20 5 24 24 C 1.36932 * 120.00144 * 273.54213 * 23 21 20 25 25 H 1.07992 * 120.00148 * 0.02562 * 24 23 21 26 26 C 1.38813 * 119.99857 * 179.97438 * 24 23 21 27 27 N 1.31619 * 120.00090 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 120.00012 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.47067 * 0.02562 * 28 26 24 30 30 H 1.48498 * 109.47241 * 120.00342 * 28 26 24 31 31 H 1.48508 * 109.47049 * 239.99894 * 28 26 24 32 32 H 1.08999 * 109.47186 * 183.89959 * 1 2 3 33 33 H 1.09004 * 109.47100 * 303.90181 * 1 2 3 34 34 H 1.08999 * 109.47632 * 63.89926 * 1 2 3 35 35 H 1.09001 * 110.36866 * 273.92009 * 4 2 1 36 36 H 1.08999 * 110.37327 * 36.13888 * 4 2 1 37 37 H 1.07999 * 120.01368 * 359.97437 * 9 8 6 38 38 H 1.08001 * 119.98500 * 180.24861 * 10 9 8 39 39 H 1.07998 * 125.84812 * 180.17442 * 14 13 12 40 40 H 1.08004 * 119.98556 * 180.02562 * 18 11 10 41 41 H 1.07998 * 120.01567 * 180.02562 * 19 18 11 42 42 H 1.09002 * 109.88925 * 241.68751 * 20 5 4 43 43 H 1.09002 * 109.88465 * 120.67519 * 20 5 4 44 44 H 0.97003 * 119.99034 * 93.54643 * 23 21 20 45 45 H 0.97001 * 120.00162 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 3.4309 -1.2423 0.7734 6 6 4.4538 -1.5595 1.5916 7 8 4.3448 -1.3985 2.7917 8 6 5.7075 -2.1027 1.0302 9 6 5.8901 -2.1516 -0.3541 10 6 7.0612 -2.6532 -0.8760 11 6 8.0607 -3.1227 -0.0236 12 6 9.3188 -3.6688 -0.5872 13 7 10.3516 -4.1433 0.1229 14 6 11.2948 -4.5485 -0.6851 15 7 10.8895 -4.3324 -1.9501 16 1 11.3845 -4.5316 -2.7601 17 7 9.6085 -3.7626 -1.8670 18 6 7.8772 -3.0792 1.3586 19 6 6.7092 -2.5733 1.8829 20 6 3.4674 -1.2741 -0.6960 21 6 2.0861 -0.8079 -1.2022 22 1 2.1921 -0.1699 -2.0796 23 7 1.2268 -1.9574 -1.4963 24 6 1.2815 -2.5562 -2.7265 25 1 1.9584 -2.1814 -3.4799 26 6 0.4677 -3.6457 -3.0049 27 7 -0.3569 -4.1029 -2.0865 28 14 0.5428 -4.4631 -4.6828 29 1 1.5434 -3.7648 -5.5292 30 1 0.9367 -5.8859 -4.5232 31 1 -0.7919 -4.3886 -5.3299 32 1 -0.3633 -1.0253 0.0699 33 1 -0.3633 0.5732 0.8530 34 1 -0.3634 0.4521 -0.9228 35 1 2.1559 -0.1720 2.0837 36 1 1.4508 -1.6693 1.4037 37 1 5.1145 -1.7927 -1.0143 38 1 7.2042 -2.6874 -1.9460 39 1 12.2400 -4.9788 -0.3886 40 1 8.6519 -3.4425 2.0176 41 1 6.5676 -2.5393 2.9530 42 1 3.6650 -2.2893 -1.0401 43 1 4.2428 -0.6012 -1.0622 44 1 0.6191 -2.2942 -0.8194 45 1 -0.9259 -4.8641 -2.2811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939464606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = 122.233663 kcal Electronic energy + Delta-G solvation = -28905.958079 eV Core-core repulsion = 24926.638935 eV Total energy + Delta-G solvation = -3979.319144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.35028 -40.34321 -38.57184 -37.41639 -34.08669 -33.48042 -32.57737 -32.09659 -31.02233 -30.45412 -30.09582 -27.91649 -26.42416 -24.58785 -23.93277 -23.35799 -22.20347 -21.96215 -20.58619 -19.68831 -19.30440 -18.74580 -17.63360 -16.86055 -16.22590 -16.01427 -15.77613 -15.47867 -15.10535 -14.72600 -14.47297 -14.27590 -13.98515 -13.81302 -13.56327 -13.07708 -12.98438 -12.77345 -12.56821 -12.48255 -12.42180 -11.97438 -11.71395 -11.61923 -11.15529 -11.09863 -10.94222 -10.72197 -10.64913 -10.42928 -10.32499 -10.27638 -10.19444 -9.90602 -9.75337 -9.64737 -9.01235 -8.98184 -8.66029 -8.25252 -7.08658 -5.86256 -3.16453 0.46511 1.41251 1.42889 2.29128 2.52685 3.19166 3.28963 3.38235 3.44155 3.46538 3.66731 3.98495 4.27660 4.50753 4.57362 4.65558 4.90536 4.97687 5.08329 5.14361 5.32519 5.36787 5.45087 5.49725 5.60235 5.65268 5.74898 5.81385 5.86708 5.88532 5.95218 6.03725 6.14676 6.20563 6.29033 6.31758 6.36455 6.37054 6.38579 6.48082 6.61253 6.67258 6.70309 6.83267 6.91219 7.62209 7.69417 7.83297 8.31320 8.40395 9.43756 9.97965 10.32617 11.35770 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.003224 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.379445 B = 8683.394510 C =11000.714025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.115 3.885 5 N -0.599 5.599 6 C 0.568 3.432 7 O -0.551 6.551 8 C -0.108 4.108 9 C -0.124 4.124 10 C -0.090 4.090 11 C -0.003 4.003 12 C 0.271 3.729 13 N -0.534 5.534 14 C 0.263 3.737 15 N -0.485 5.485 16 H 0.443 0.557 17 N -0.300 5.300 18 C -0.088 4.088 19 C -0.068 4.068 20 C 0.057 3.943 21 C 0.170 3.830 22 H 0.072 0.928 23 N -0.711 5.711 24 C -0.248 4.248 25 H 0.073 0.927 26 C -0.007 4.007 27 N -0.927 5.927 28 Si 0.906 3.094 29 H -0.279 1.279 30 H -0.292 1.292 31 H -0.291 1.291 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.174 0.826 38 H 0.135 0.865 39 H 0.225 0.775 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.074 3.718 2.611 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.007 4.007 5 N -0.331 5.331 6 C 0.358 3.642 7 O -0.431 6.431 8 C -0.112 4.112 9 C -0.141 4.141 10 C -0.110 4.110 11 C -0.006 4.006 12 C -0.008 4.008 13 N -0.261 5.261 14 C -0.036 4.036 15 N -0.203 5.203 16 H 0.289 0.711 17 N -0.129 5.129 18 C -0.108 4.108 19 C -0.087 4.087 20 C -0.069 4.069 21 C 0.058 3.942 22 H 0.090 0.910 23 N -0.352 5.352 24 C -0.379 4.379 25 H 0.091 0.909 26 C -0.204 4.204 27 N -0.575 5.575 28 Si 0.737 3.263 29 H -0.205 1.205 30 H -0.219 1.219 31 H -0.218 1.218 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.191 0.809 38 H 0.153 0.847 39 H 0.241 0.759 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.223 0.777 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.616 3.921 2.910 20.215 hybrid contribution 0.666 -1.161 -1.314 1.875 sum 20.282 2.760 1.596 20.531 Atomic orbital electron populations 1.21546 0.93290 1.03008 1.01034 1.22615 0.97013 0.98508 0.95249 0.90200 1.22363 0.82369 0.98523 0.97476 1.48348 1.11955 1.65162 1.07593 1.17900 0.82675 0.78039 0.85569 1.90737 1.82402 1.55308 1.14610 1.20083 0.94997 1.02068 0.94083 1.22959 0.98506 0.97235 0.95430 1.21192 0.92381 0.97313 1.00153 1.17659 0.89369 1.00229 0.93379 1.22386 0.94392 0.97231 0.86822 1.70520 1.01430 1.19741 1.34433 1.26112 0.99886 0.96678 0.80915 1.48157 1.14126 1.48457 1.09604 0.71105 1.78307 0.95300 1.20237 1.19039 1.21092 0.97560 0.98505 0.93609 1.21176 0.91586 0.95418 1.00533 1.23769 1.01586 1.02290 0.79229 1.21277 0.88227 0.89933 0.94797 0.90977 1.42466 1.45320 1.32711 1.14734 1.19258 1.18631 1.09420 0.90544 0.90875 1.24747 0.98921 0.98845 0.97879 1.69662 1.27251 1.27447 1.33117 0.86151 0.77252 0.79272 0.83666 1.20452 1.21878 1.21836 0.91173 0.93616 0.92054 0.91000 0.90965 0.80935 0.84664 0.75886 0.84280 0.84242 0.89208 0.91604 0.77672 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.72 3.51 -88.48 -0.31 -2.03 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.11 1.88 6.40 -2.35 -0.02 1.87 16 5 N -0.60 -10.20 3.34 -176.55 -0.59 -10.79 16 6 C 0.57 10.16 7.81 -12.39 -0.10 10.06 16 7 O -0.55 -11.12 16.61 5.30 0.09 -11.03 16 8 C -0.11 -1.70 5.88 -104.92 -0.62 -2.32 16 9 C -0.12 -1.79 8.59 -39.24 -0.34 -2.12 16 10 C -0.09 -1.23 9.66 -39.32 -0.38 -1.61 16 11 C 0.00 -0.05 5.88 -104.83 -0.62 -0.66 16 12 C 0.27 3.54 7.77 -156.60 -1.22 2.32 16 13 N -0.53 -6.05 10.81 -12.40 -0.13 -6.18 16 14 C 0.26 1.81 13.11 -90.69 -1.19 0.62 16 15 N -0.48 -3.57 7.44 29.52 0.22 -3.35 16 16 H 0.44 1.47 8.96 -182.34 -1.63 -0.16 16 17 N -0.30 -3.64 12.42 32.09 0.40 -3.24 16 18 C -0.09 -1.14 9.67 -39.32 -0.38 -1.52 16 19 C -0.07 -0.97 9.58 -39.24 -0.38 -1.34 16 20 C 0.06 0.92 4.60 -3.07 -0.01 0.91 16 21 C 0.17 2.98 3.37 -66.10 -0.22 2.76 16 22 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 23 N -0.71 -15.97 4.61 -51.65 -0.24 -16.21 16 24 C -0.25 -6.28 9.98 -15.06 -0.15 -6.43 16 25 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 26 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 27 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 28 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 30 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 31 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 32 H 0.07 1.24 6.38 -51.93 -0.33 0.91 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 36 H 0.07 1.29 7.98 -51.93 -0.41 0.87 16 37 H 0.17 2.42 2.71 -59.13 -0.16 2.26 16 38 H 0.14 1.71 7.82 -52.49 -0.41 1.30 16 39 H 0.22 0.28 8.06 -52.49 -0.42 -0.14 16 40 H 0.14 1.60 7.82 -52.48 -0.41 1.19 16 41 H 0.14 1.89 7.66 -52.49 -0.40 1.49 16 42 H 0.09 1.63 6.63 -51.93 -0.34 1.29 16 43 H 0.07 0.90 6.73 -51.93 -0.35 0.55 16 44 H 0.39 9.43 6.10 -40.82 -0.25 9.18 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -34.18 372.84 -11.40 -45.59 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.78 Total: 10.63 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -5.69 Total: -1.47 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: 0.38 Total: -65.74 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.18 -11.40 -45.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939464606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.819 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds