Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.90897 * 2 1 4 4 C 1.54904 * 111.00207 * 123.90146 * 2 1 3 5 5 N 1.47753 * 104.83879 * 155.17097 * 4 2 1 6 6 C 1.34774 * 125.82102 * 155.83023 * 5 4 2 7 7 O 1.21571 * 120.00475 * 354.21535 * 6 5 4 8 8 C 1.47720 * 119.99602 * 174.21796 * 6 5 4 9 9 C 1.39712 * 120.02489 * 6.99861 * 8 6 5 10 10 C 1.37668 * 119.96949 * 179.74025 * 9 8 6 11 11 C 1.39503 * 120.02865 * 0.53144 * 10 9 8 12 12 C 1.48282 * 119.97595 * 179.69852 * 11 10 9 13 13 N 1.34016 * 125.65633 * 179.71424 * 12 11 10 14 14 C 1.30635 * 109.78787 * 179.81724 * 13 12 11 15 15 N 1.34576 * 108.30609 * 0.44127 * 14 13 12 16 16 H 0.96998 * 126.74256 * 179.76796 * 15 14 13 17 17 N 1.31554 * 125.65244 * 0.02562 * 12 11 10 18 18 C 1.39497 * 120.04634 * 359.72194 * 11 10 9 19 19 C 1.37666 * 120.02893 * 0.02562 * 18 11 10 20 20 C 1.47016 * 108.52692 * 335.74747 * 5 4 2 21 21 C 1.54326 * 107.40442 * 1.18458 * 20 5 4 22 22 H 1.09000 * 110.72130 * 140.47658 * 21 20 5 23 23 N 1.46502 * 110.71854 * 263.74783 * 21 20 5 24 24 C 1.36932 * 120.00144 * 273.54213 * 23 21 20 25 25 H 1.07992 * 120.00148 * 0.02562 * 24 23 21 26 26 C 1.38813 * 119.99857 * 179.97438 * 24 23 21 27 27 N 1.31619 * 120.00090 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 120.00012 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.47067 * 0.02562 * 28 26 24 30 30 H 1.48498 * 109.47241 * 120.00342 * 28 26 24 31 31 H 1.48508 * 109.47049 * 239.99894 * 28 26 24 32 32 H 1.08999 * 109.47186 * 183.89959 * 1 2 3 33 33 H 1.09004 * 109.47100 * 303.90181 * 1 2 3 34 34 H 1.08999 * 109.47632 * 63.89926 * 1 2 3 35 35 H 1.09001 * 110.36866 * 273.92009 * 4 2 1 36 36 H 1.08999 * 110.37327 * 36.13888 * 4 2 1 37 37 H 1.07999 * 120.01368 * 359.97437 * 9 8 6 38 38 H 1.08001 * 119.98500 * 180.24861 * 10 9 8 39 39 H 1.07998 * 125.84812 * 180.17442 * 14 13 12 40 40 H 1.08004 * 119.98556 * 180.02562 * 18 11 10 41 41 H 1.07998 * 120.01567 * 180.02562 * 19 18 11 42 42 H 1.09002 * 109.88925 * 241.68751 * 20 5 4 43 43 H 1.09002 * 109.88465 * 120.67519 * 20 5 4 44 44 H 0.97003 * 119.99034 * 93.54643 * 23 21 20 45 45 H 0.97001 * 120.00162 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 3.4309 -1.2423 0.7734 6 6 4.4538 -1.5595 1.5916 7 8 4.3448 -1.3985 2.7917 8 6 5.7075 -2.1027 1.0302 9 6 5.8901 -2.1516 -0.3541 10 6 7.0612 -2.6532 -0.8760 11 6 8.0607 -3.1227 -0.0236 12 6 9.3188 -3.6688 -0.5872 13 7 10.3516 -4.1433 0.1229 14 6 11.2948 -4.5485 -0.6851 15 7 10.8895 -4.3324 -1.9501 16 1 11.3845 -4.5316 -2.7601 17 7 9.6085 -3.7626 -1.8670 18 6 7.8772 -3.0792 1.3586 19 6 6.7092 -2.5733 1.8829 20 6 3.4674 -1.2741 -0.6960 21 6 2.0861 -0.8079 -1.2022 22 1 2.1921 -0.1699 -2.0796 23 7 1.2268 -1.9574 -1.4963 24 6 1.2815 -2.5562 -2.7265 25 1 1.9584 -2.1814 -3.4799 26 6 0.4677 -3.6457 -3.0049 27 7 -0.3569 -4.1029 -2.0865 28 14 0.5428 -4.4631 -4.6828 29 1 1.5434 -3.7648 -5.5292 30 1 0.9367 -5.8859 -4.5232 31 1 -0.7919 -4.3886 -5.3299 32 1 -0.3633 -1.0253 0.0699 33 1 -0.3633 0.5732 0.8530 34 1 -0.3634 0.4521 -0.9228 35 1 2.1559 -0.1720 2.0837 36 1 1.4508 -1.6693 1.4037 37 1 5.1145 -1.7927 -1.0143 38 1 7.2042 -2.6874 -1.9460 39 1 12.2400 -4.9788 -0.3886 40 1 8.6519 -3.4425 2.0176 41 1 6.5676 -2.5393 2.9530 42 1 3.6650 -2.2893 -1.0401 43 1 4.2428 -0.6012 -1.0622 44 1 0.6191 -2.2942 -0.8194 45 1 -0.9259 -4.8641 -2.2811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939464606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 101.066165 kcal Electronic energy + Delta-G solvation = -28906.875971 eV Core-core repulsion = 24926.638935 eV Total energy + Delta-G solvation = -3980.237036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.07407 -41.64211 -39.76737 -38.80882 -35.75618 -34.56290 -33.82836 -32.94355 -32.45713 -31.79768 -31.09228 -29.46755 -27.67167 -26.03987 -25.35829 -24.36736 -23.43480 -22.90641 -21.54805 -20.96179 -20.69246 -19.42685 -19.37630 -18.23413 -17.46691 -17.12868 -16.79678 -16.52006 -16.43261 -16.02009 -15.86797 -15.46881 -15.39729 -15.09474 -14.77317 -14.67019 -14.22411 -14.08313 -13.77082 -13.69983 -13.33042 -13.20922 -13.07174 -12.89378 -12.87229 -12.80634 -12.33764 -12.17815 -12.03659 -11.68480 -11.52954 -11.43043 -11.33230 -11.17669 -11.13510 -11.05787 -10.82546 -10.07531 -9.78798 -9.55154 -8.97035 -7.89656 -5.17311 -0.60468 0.33761 0.69855 1.50388 1.51973 1.54481 1.60412 1.72662 1.92805 2.11561 2.59593 2.86006 2.94295 3.35905 3.41410 3.51437 3.72661 3.84916 3.90661 3.92125 3.98548 4.10046 4.15573 4.29299 4.40101 4.47485 4.55607 4.62412 4.66587 4.73176 4.86515 4.91330 4.96174 4.98582 5.03217 5.09540 5.16095 5.22397 5.32247 5.34546 5.35639 5.39682 5.57910 5.63114 5.74900 6.22083 6.31823 6.46887 6.98298 7.02458 7.39905 8.14123 8.36554 9.33828 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.003224 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.379445 B = 8683.394510 C =11000.714025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 H 0.112 0.888 4 C 0.113 3.887 5 N -0.601 5.601 6 C 0.564 3.436 7 O -0.582 6.582 8 C -0.130 4.130 9 C -0.121 4.121 10 C -0.094 4.094 11 C -0.003 4.003 12 C 0.249 3.751 13 N -0.567 5.567 14 C 0.283 3.717 15 N -0.472 5.472 16 H 0.461 0.539 17 N -0.328 5.328 18 C -0.083 4.083 19 C -0.069 4.069 20 C 0.066 3.934 21 C 0.160 3.840 22 H 0.088 0.912 23 N -0.722 5.722 24 C -0.230 4.230 25 H 0.086 0.914 26 C -0.073 4.073 27 N -0.969 5.969 28 Si 0.963 3.037 29 H -0.261 1.261 30 H -0.303 1.303 31 H -0.299 1.299 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.176 0.824 38 H 0.144 0.856 39 H 0.280 0.720 40 H 0.154 0.846 41 H 0.141 0.859 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.375 0.625 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.065 4.553 1.558 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 H 0.130 0.870 4 C -0.009 4.009 5 N -0.331 5.331 6 C 0.356 3.644 7 O -0.464 6.464 8 C -0.134 4.134 9 C -0.139 4.139 10 C -0.114 4.114 11 C -0.006 4.006 12 C -0.030 4.030 13 N -0.296 5.296 14 C -0.015 4.015 15 N -0.192 5.192 16 H 0.310 0.690 17 N -0.159 5.159 18 C -0.103 4.103 19 C -0.088 4.088 20 C -0.059 4.059 21 C 0.050 3.950 22 H 0.106 0.894 23 N -0.362 5.362 24 C -0.362 4.362 25 H 0.104 0.896 26 C -0.266 4.266 27 N -0.620 5.620 28 Si 0.794 3.206 29 H -0.185 1.185 30 H -0.231 1.231 31 H -0.226 1.226 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.193 0.807 38 H 0.162 0.838 39 H 0.295 0.705 40 H 0.172 0.828 41 H 0.159 0.841 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.209 0.791 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 22.669 4.798 1.807 23.242 hybrid contribution -0.059 -1.412 -0.986 1.723 sum 22.610 3.386 0.821 22.877 Atomic orbital electron populations 1.21473 0.93381 1.01374 1.02073 1.22586 0.96797 0.99369 0.93043 0.87004 1.22373 0.81960 0.98019 0.98549 1.48427 1.11954 1.64866 1.07896 1.18267 0.83357 0.77549 0.85275 1.90706 1.83129 1.56745 1.15816 1.20028 0.94652 1.03870 0.94846 1.22915 0.98837 0.97289 0.94825 1.21280 0.92152 0.97288 1.00660 1.17879 0.89886 0.99214 0.93596 1.22292 0.94781 0.98529 0.87409 1.70486 1.02074 1.21199 1.35825 1.27136 1.00331 0.94195 0.79866 1.48103 1.12749 1.47397 1.10953 0.68951 1.78183 0.97687 1.21121 1.18917 1.21196 0.97322 0.97969 0.93782 1.21254 0.91696 0.95273 1.00573 1.23634 1.01519 1.01936 0.78772 1.21567 0.88114 0.88825 0.96487 0.89398 1.42630 1.45993 1.33943 1.13623 1.19688 1.16821 1.08237 0.91484 0.89628 1.25450 0.99847 1.00429 1.00834 1.69817 1.28965 1.28229 1.34946 0.85213 0.77048 0.77768 0.80591 1.18493 1.23108 1.22626 0.94350 0.91069 0.92215 0.90157 0.93231 0.80743 0.83824 0.70482 0.82835 0.84076 0.91205 0.88220 0.79091 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.85 71.98 0.64 -3.07 16 2 C -0.10 -2.81 3.51 -9.40 -0.03 -2.85 16 3 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.11 3.67 6.40 86.79 0.56 4.23 16 5 N -0.60 -20.23 3.34 -830.77 -2.77 -23.00 16 6 C 0.56 20.27 7.81 86.75 0.68 20.95 16 7 O -0.58 -23.83 16.61 -3.94 -0.07 -23.90 16 8 C -0.13 -4.08 5.88 -20.06 -0.12 -4.20 16 9 C -0.12 -3.43 8.59 22.49 0.19 -3.23 16 10 C -0.09 -2.49 9.66 22.44 0.22 -2.27 16 11 C 0.00 -0.08 5.88 -20.00 -0.12 -0.19 16 12 C 0.25 6.17 7.77 137.40 1.07 7.23 16 13 N -0.57 -11.61 10.81 -193.13 -2.09 -13.70 16 14 C 0.28 2.88 13.11 180.37 2.36 5.25 16 15 N -0.47 -5.59 7.44 -60.51 -0.45 -6.04 16 16 H 0.46 1.62 8.96 -213.10 -1.91 -0.29 16 17 N -0.33 -7.43 12.42 -52.40 -0.65 -8.08 16 18 C -0.08 -2.10 9.67 22.44 0.22 -1.88 16 19 C -0.07 -1.95 9.58 22.49 0.22 -1.74 16 20 C 0.07 2.07 4.60 86.73 0.40 2.47 16 21 C 0.16 5.40 3.37 46.18 0.16 5.55 16 22 H 0.09 2.74 8.12 -2.39 -0.02 2.72 16 23 N -0.72 -32.49 4.61 -317.34 -1.46 -33.96 16 24 C -0.23 -11.61 9.98 84.03 0.84 -10.77 16 25 H 0.09 4.03 7.83 -2.91 -0.02 4.01 16 26 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 27 N -0.97 -57.50 13.06 21.65 0.28 -57.22 16 28 Si 0.96 44.51 29.55 68.60 2.03 46.54 16 29 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 30 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 31 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 32 H 0.04 1.38 6.38 -2.39 -0.02 1.37 16 33 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.47 8.00 -2.39 -0.02 2.45 16 36 H 0.05 1.83 7.98 -2.39 -0.02 1.81 16 37 H 0.18 4.73 2.71 -9.15 -0.02 4.70 16 38 H 0.14 3.51 7.82 -2.91 -0.02 3.48 16 39 H 0.28 -0.76 8.06 -2.91 -0.02 -0.79 16 40 H 0.15 3.39 7.82 -2.91 -0.02 3.37 16 41 H 0.14 3.87 7.66 -2.91 -0.02 3.84 16 42 H 0.07 2.51 6.63 -2.39 -0.02 2.50 16 43 H 0.10 2.49 6.73 -2.39 -0.02 2.47 16 44 H 0.38 18.79 6.10 -92.71 -0.57 18.22 16 45 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -76.36 372.84 1.13 -75.23 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -1.43 Total: 32.18 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 7.74 Total: 11.94 kcal Atomic # 7 Polarization: -134.85 SS G_CDS: -7.14 Total: -142.00 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.07 Total: -23.90 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -76.36 1.13 -75.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939464606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.298 kcal (2) G-P(sol) polarization free energy of solvation -76.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds