Wall clock time and date at job start Sat Apr 11 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.64012 * 2 1 4 4 C 1.54320 * 110.71857 * 236.85636 * 2 1 3 5 5 N 1.47031 * 107.26723 * 219.44568 * 4 2 1 6 6 C 1.34777 * 125.64400 * 178.90510 * 5 4 2 7 7 O 1.21572 * 119.99819 * 174.76584 * 6 5 4 8 8 C 1.47687 * 120.00483 * 354.76897 * 6 5 4 9 9 C 1.39692 * 120.07402 * 7.67255 * 8 6 5 10 10 C 1.37741 * 119.91436 * 179.76859 * 9 8 6 11 11 C 1.39025 * 120.08138 * 0.51180 * 10 9 8 12 12 N 1.39939 * 119.92161 * 179.75997 * 11 10 9 13 13 C 1.36313 * 126.86515 * 359.69713 * 12 11 10 14 14 C 1.34967 * 106.77688 * 179.84303 * 13 12 11 15 15 N 1.33370 * 109.01824 * 0.42213 * 14 13 12 16 16 N 1.28769 * 109.92442 * 359.73569 * 15 14 13 17 17 C 1.39025 * 120.15971 * 359.74248 * 11 10 9 18 18 C 1.37733 * 120.07830 * 0.02562 * 17 11 10 19 19 C 1.47418 * 108.70420 * 358.93958 * 5 4 2 20 20 C 1.55128 * 104.94339 * 24.00516 * 19 5 4 21 21 H 1.09000 * 110.93531 * 81.21050 * 20 19 5 22 22 N 1.46502 * 111.16246 * 205.12828 * 20 19 5 23 23 C 1.36939 * 119.99933 * 267.16707 * 22 20 19 24 24 H 1.08004 * 120.00207 * 0.02562 * 23 22 20 25 25 C 1.38814 * 119.99798 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99742 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99728 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47029 * 90.00500 * 27 25 23 29 29 H 1.48505 * 109.47272 * 210.00232 * 27 25 23 30 30 H 1.48494 * 109.47505 * 330.00326 * 27 25 23 31 31 H 1.08997 * 109.46943 * 179.30047 * 1 2 3 32 32 H 1.09004 * 109.47214 * 299.30359 * 1 2 3 33 33 H 1.09001 * 109.47006 * 59.29725 * 1 2 3 34 34 H 1.09000 * 109.88265 * 338.85808 * 4 2 1 35 35 H 1.09000 * 109.88160 * 99.87850 * 4 2 1 36 36 H 1.08002 * 120.04613 * 0.03081 * 9 8 6 37 37 H 1.08010 * 119.96052 * 180.27616 * 10 9 8 38 38 H 1.07999 * 126.61135 * 359.97438 * 13 12 11 39 39 H 1.07999 * 125.49131 * 180.17609 * 14 13 12 40 40 H 1.08000 * 119.96150 * 180.02562 * 17 11 10 41 41 H 1.08007 * 120.04210 * 180.02562 * 18 17 11 42 42 H 1.09003 * 110.36504 * 142.96448 * 19 5 4 43 43 H 1.08995 * 110.37395 * 265.29129 * 19 5 4 44 44 H 0.96991 * 119.99730 * 87.17253 * 22 20 19 45 45 H 0.97008 * 119.99526 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2445 -1.5495 -0.7415 6 6 3.9915 -2.3822 -1.4933 7 8 4.9943 -2.8873 -1.0272 8 6 3.5918 -2.6811 -2.8833 9 6 2.5358 -1.9828 -3.4736 10 6 2.1689 -2.2609 -4.7718 11 6 2.8412 -3.2426 -5.4908 12 7 2.4624 -3.5259 -6.8078 13 6 1.4589 -2.9340 -7.5155 14 6 1.4505 -3.5101 -8.7360 15 7 2.4089 -4.4362 -8.7860 16 7 3.0357 -4.4802 -7.6620 17 6 3.8892 -3.9433 -4.9047 18 6 4.2647 -3.6673 -3.6086 19 6 3.4633 -1.2509 0.6855 20 6 2.0789 -0.7933 1.2152 21 1 1.4451 -1.6511 1.4403 22 7 2.2214 0.0737 2.3875 23 6 2.1866 -0.4651 3.6459 24 1 2.0545 -1.5293 3.7743 25 6 2.3221 0.3564 4.7566 26 7 2.4836 1.6532 4.6001 27 14 2.2754 -0.3787 6.4732 28 1 3.6513 -0.7508 6.8900 29 1 1.7230 0.6193 7.4242 30 1 1.4147 -1.5887 6.4703 31 1 -0.3633 -1.0276 -0.0125 32 1 -0.3634 0.5030 0.8962 33 1 -0.3633 0.5247 -0.8836 34 1 1.3129 -1.4732 -1.5799 35 1 2.3716 -0.0992 -1.9989 36 1 2.0104 -1.2228 -2.9143 37 1 1.3554 -1.7182 -5.2304 38 1 0.7993 -2.1529 -7.1674 39 1 0.7739 -3.2639 -9.5409 40 1 4.4095 -4.7050 -5.4664 41 1 5.0792 -4.2117 -3.1540 42 1 3.7959 -2.1447 1.2134 43 1 4.1931 -0.4493 0.7979 44 1 2.3403 1.0294 2.2722 45 1 2.5780 2.2274 5.3763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939519057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:37 Heat of formation + Delta-G solvation = 138.062928 kcal Electronic energy + Delta-G solvation = -28459.408357 eV Core-core repulsion = 24480.775621 eV Total energy + Delta-G solvation = -3978.632736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.64372 -40.71224 -39.03477 -37.65490 -34.95100 -34.30317 -32.59637 -31.95754 -31.08375 -30.89318 -30.22110 -27.72487 -26.71851 -25.19206 -23.99577 -23.77925 -22.47012 -21.69845 -21.29587 -20.25380 -19.89096 -18.86409 -17.60852 -17.20492 -16.36704 -16.28944 -15.91791 -15.63328 -15.46178 -14.80108 -14.61915 -14.49707 -14.17435 -14.13396 -13.86984 -13.54807 -13.37976 -13.11472 -13.03236 -12.81697 -12.65449 -12.36182 -11.95844 -11.77709 -11.67770 -11.51021 -11.43279 -11.15658 -11.05934 -10.78641 -10.65513 -10.31818 -10.04660 -9.92283 -9.89661 -9.80446 -9.59028 -9.07895 -8.92339 -8.50351 -7.15514 -5.90754 -3.21705 -0.13692 0.80825 1.19820 1.63459 2.07976 2.66614 2.97213 3.37149 3.43235 3.43849 3.48017 3.87788 3.97292 4.26604 4.28612 4.41491 4.48638 4.55357 4.62054 4.72947 4.78152 4.91555 5.00044 5.09031 5.10643 5.28325 5.37101 5.44414 5.49479 5.56105 5.62804 5.68771 5.74367 5.80969 5.89382 5.91948 6.01974 6.04559 6.14084 6.27401 6.34430 6.40261 6.47551 6.50103 6.77891 7.57148 7.59384 7.64956 8.14772 8.26590 9.38888 9.90750 10.25540 11.30951 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.002073 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.122706 B =13502.226369 C =14231.593540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.087 0.913 4 C 0.094 3.906 5 N -0.604 5.604 6 C 0.565 3.435 7 O -0.537 6.537 8 C -0.119 4.119 9 C -0.102 4.102 10 C -0.134 4.134 11 C 0.153 3.847 12 N -0.318 5.318 13 C 0.024 3.976 14 C -0.073 4.073 15 N -0.232 5.232 16 N -0.061 5.061 17 C -0.116 4.116 18 C -0.040 4.040 19 C 0.079 3.921 20 C 0.178 3.822 21 H 0.070 0.930 22 N -0.707 5.707 23 C -0.250 4.250 24 H 0.073 0.927 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.909 3.091 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.176 0.824 37 H 0.138 0.862 38 H 0.198 0.802 39 H 0.191 0.809 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.713 -4.951 -23.807 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.105 0.895 4 C -0.029 4.029 5 N -0.337 5.337 6 C 0.354 3.646 7 O -0.415 6.415 8 C -0.123 4.123 9 C -0.120 4.120 10 C -0.155 4.155 11 C 0.060 3.940 12 N -0.099 5.099 13 C -0.126 4.126 14 C -0.228 4.228 15 N -0.102 5.102 16 N -0.039 5.039 17 C -0.136 4.136 18 C -0.059 4.059 19 C -0.045 4.045 20 C 0.065 3.935 21 H 0.087 0.913 22 N -0.347 5.347 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.204 4.204 26 N -0.576 5.576 27 Si 0.739 3.261 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.193 0.807 37 H 0.156 0.844 38 H 0.214 0.786 39 H 0.208 0.792 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.222 0.778 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.093 -6.442 -23.591 24.795 hybrid contribution -0.701 0.854 0.963 1.465 sum -4.794 -5.588 -22.629 23.796 Atomic orbital electron populations 1.21684 0.93720 1.01726 1.02165 1.22596 0.96596 1.00057 0.94500 0.89454 1.22621 0.87991 0.94558 0.97721 1.48382 1.29381 1.43209 1.12701 1.17801 0.83036 0.79024 0.84768 1.90799 1.25133 1.52366 1.73191 1.20176 0.98062 0.99088 0.94966 1.22768 0.95487 0.99461 0.94269 1.20861 1.01431 0.98117 0.95048 1.17831 0.97601 0.98081 0.80445 1.48063 1.23810 1.27216 1.10838 1.23623 0.94276 1.01396 0.93335 1.23296 1.02265 0.98768 0.98445 1.74366 1.05660 1.16029 1.14110 1.82160 1.18443 1.08405 0.94927 1.20894 0.96494 1.00740 0.95500 1.21232 0.97873 0.94639 0.92154 1.23572 1.02101 1.01258 0.77618 1.21413 0.91833 0.93628 0.86629 0.91250 1.42271 1.86063 1.06185 1.00136 1.19245 1.43026 0.92752 0.83034 0.90926 1.24768 1.02094 0.95450 0.98075 1.69655 1.55793 1.02681 1.29453 0.86176 0.77746 0.77903 0.84253 1.21538 1.21692 1.20631 0.92802 0.91111 0.93174 0.90489 0.90822 0.80721 0.84411 0.78563 0.79164 0.83647 0.83301 0.90802 0.91184 0.77830 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.14 37.16 0.34 -1.21 16 2 C -0.12 -1.53 3.19 -88.79 -0.28 -1.81 16 3 H 0.09 1.19 8.00 -51.93 -0.42 0.77 16 4 C 0.09 1.00 4.47 -3.06 -0.01 0.99 16 5 N -0.60 -8.67 3.33 -175.79 -0.58 -9.25 16 6 C 0.56 8.50 7.80 -12.40 -0.10 8.40 16 7 O -0.54 -10.06 16.67 5.30 0.09 -9.97 16 8 C -0.12 -1.36 5.87 -104.95 -0.62 -1.98 16 9 C -0.10 -0.86 8.58 -39.22 -0.34 -1.20 16 10 C -0.13 -0.95 9.46 -39.47 -0.37 -1.32 16 11 C 0.15 1.37 6.70 -83.57 -0.56 0.81 16 12 N -0.32 -2.92 3.85 -10.50 -0.04 -2.97 16 13 C 0.02 0.14 10.92 -16.72 -0.18 -0.04 16 14 C -0.07 -0.51 11.86 -18.05 -0.21 -0.72 16 15 N -0.23 -2.52 12.33 30.09 0.37 -2.15 16 16 N -0.06 -0.71 13.15 60.35 0.79 0.08 16 17 C -0.12 -1.12 9.66 -39.47 -0.38 -1.50 16 18 C -0.04 -0.42 9.58 -39.22 -0.38 -0.80 16 19 C 0.08 1.39 6.59 -2.41 -0.02 1.37 16 20 C 0.18 3.11 3.17 -65.66 -0.21 2.90 16 21 H 0.07 1.25 8.00 -51.93 -0.42 0.84 16 22 N -0.71 -16.00 5.25 -51.23 -0.27 -16.27 16 23 C -0.25 -6.47 9.96 -15.06 -0.15 -6.62 16 24 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 27 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.66 6.31 -51.93 -0.33 0.34 16 35 H 0.07 0.62 6.81 -51.93 -0.35 0.27 16 36 H 0.18 1.21 2.75 -57.97 -0.16 1.06 16 37 H 0.14 0.51 6.82 -52.48 -0.36 0.15 16 38 H 0.20 0.33 7.16 -52.49 -0.38 -0.05 16 39 H 0.19 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.15 1.32 7.72 -52.49 -0.41 0.91 16 41 H 0.15 1.57 7.67 -52.48 -0.40 1.17 16 42 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.39 9.31 7.76 -40.82 -0.32 8.99 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -33.31 374.79 -7.46 -40.77 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.61 Total: 6.41 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.56 Total: -2.99 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.99 Total: -56.37 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.31 -7.46 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939519057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.833 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds