Wall clock time and date at job start Sat Apr 11 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.91331 * 2 1 4 4 C 1.54908 * 111.00368 * 236.09952 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.34774 * 125.65138 * 204.15299 * 5 4 2 7 7 O 1.21542 * 119.99645 * 0.02562 * 6 5 4 8 8 C 1.47978 * 120.00318 * 179.97438 * 6 5 4 9 9 C 1.39444 * 119.65292 * 180.02562 * 8 6 5 10 10 C 1.38339 * 119.13743 * 179.97438 * 9 8 6 11 11 C 1.39289 * 118.43667 * 0.02562 * 10 9 8 12 12 N 1.39875 * 120.38672 * 179.97438 * 11 10 9 13 13 C 1.37161 * 126.48152 * 180.02562 * 12 11 10 14 14 C 1.34627 * 106.82855 * 179.97438 * 13 12 11 15 15 N 1.34153 * 108.21714 * 359.97438 * 14 13 12 16 16 C 1.30495 * 109.36141 * 359.72641 * 15 14 13 17 17 C 1.39268 * 119.21903 * 359.97438 * 11 10 9 18 18 N 1.31379 * 120.80364 * 359.74572 * 17 11 10 19 19 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 20 20 C 1.54325 * 107.30599 * 358.92448 * 19 5 4 21 21 H 1.08997 * 110.72163 * 96.18354 * 20 19 5 22 22 N 1.46497 * 110.72131 * 219.45483 * 20 19 5 23 23 C 1.36940 * 120.00145 * 268.52531 * 22 20 19 24 24 H 1.08003 * 119.99723 * 359.97438 * 23 22 20 25 25 C 1.38807 * 120.00230 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00088 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00129 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47159 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47504 * 119.99893 * 27 25 23 30 30 H 1.48504 * 109.47332 * 239.99957 * 27 25 23 31 31 H 1.09001 * 109.47276 * 182.45105 * 1 2 3 32 32 H 1.09003 * 109.46690 * 302.44645 * 1 2 3 33 33 H 1.08998 * 109.47248 * 62.44806 * 1 2 3 34 34 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 35 35 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 36 36 H 1.08003 * 120.42925 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.77787 * 180.02562 * 10 9 8 38 38 H 1.08002 * 126.58303 * 359.97438 * 13 12 11 39 39 H 1.08002 * 125.88943 * 180.02562 * 14 13 12 40 40 H 1.08002 * 125.71722 * 180.26655 * 16 15 14 41 41 H 1.08005 * 119.59543 * 180.02562 * 17 11 10 42 42 H 1.09004 * 109.85762 * 239.50064 * 19 5 4 43 43 H 1.08995 * 110.00297 * 118.43011 * 19 5 4 44 44 H 0.96996 * 120.00123 * 88.52155 * 22 20 19 45 45 H 0.97000 * 120.00075 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4280 -1.2430 -0.7761 6 6 4.4473 -1.5601 -1.5988 7 8 4.2982 -1.4967 -2.8034 8 6 5.7483 -1.9842 -1.0356 9 6 6.7982 -2.3100 -1.8935 10 6 8.0100 -2.7047 -1.3555 11 6 8.1332 -2.7616 0.0308 12 7 9.3398 -3.1558 0.6183 13 6 9.5984 -3.2561 1.9616 14 6 10.8745 -3.6671 2.0832 15 7 11.3863 -3.8161 0.8522 16 6 10.4755 -3.5190 -0.0339 17 6 7.0409 -2.4214 0.8249 18 7 5.9053 -2.0453 0.2816 19 6 3.4675 -1.2741 0.6959 20 6 2.0862 -0.8079 1.2022 21 1 1.4468 -1.6631 1.4210 22 7 2.2287 0.0496 2.3814 23 6 2.2001 -0.5002 3.6353 24 1 2.0721 -1.5659 3.7548 25 6 2.3346 0.3124 4.7526 26 7 2.4901 1.6112 4.6070 27 14 2.2949 -0.4375 6.4631 28 1 2.1111 -1.9072 6.3551 29 1 3.5741 -0.1490 7.1599 30 1 1.1684 0.1474 7.2340 31 1 -0.3634 -1.0267 0.0439 32 1 -0.3633 0.5514 0.8673 33 1 -0.3633 0.4753 -0.9111 34 1 1.4518 -1.6704 -1.4024 35 1 2.1541 -0.1725 -2.0842 36 1 6.6672 -2.2542 -2.9641 37 1 8.8410 -2.9627 -1.9953 38 1 8.9102 -3.0457 2.7670 39 1 11.3960 -3.8468 3.0118 40 1 10.6039 -3.5527 -1.1057 41 1 7.1298 -2.4629 1.9005 42 1 4.2427 -0.5997 1.0599 43 1 3.6662 -2.2883 1.0423 44 1 2.3433 1.0068 2.2741 45 1 2.5837 2.1790 5.3878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939530941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:48 Heat of formation + Delta-G solvation = 98.606158 kcal Electronic energy + Delta-G solvation = -28936.989537 eV Core-core repulsion = 24956.645827 eV Total energy + Delta-G solvation = -3980.343709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.72756 -40.80162 -39.33360 -37.57674 -35.02112 -34.11514 -32.85047 -32.40580 -30.75947 -30.33228 -29.80153 -27.54540 -26.62528 -24.90698 -24.23974 -23.88555 -22.01928 -21.32865 -21.18349 -20.00785 -19.88348 -18.97726 -17.38785 -17.20009 -16.85441 -16.07476 -15.82616 -15.65666 -15.25751 -14.96022 -14.84701 -14.39418 -14.13965 -14.06916 -13.77109 -13.56852 -13.43919 -13.28008 -13.08357 -12.94513 -12.59611 -12.38501 -12.09042 -11.52457 -11.38924 -11.16568 -11.04863 -10.81217 -10.62904 -10.55141 -10.32443 -10.24322 -10.19991 -9.96288 -9.79395 -9.69080 -9.16326 -8.98127 -8.80524 -8.35566 -7.08868 -5.86196 -3.16323 -0.00518 0.74231 1.74206 2.17109 2.66586 2.78198 2.99742 3.36870 3.43274 3.45257 3.59411 3.88639 4.05509 4.10604 4.24488 4.41911 4.44034 4.52535 4.75450 4.94958 5.04051 5.13160 5.16834 5.20839 5.29234 5.37278 5.46249 5.56069 5.62287 5.75519 5.81095 5.86534 5.91343 5.96121 5.99988 6.21342 6.27124 6.30981 6.45529 6.51352 6.60481 6.62686 6.75514 6.92392 7.36851 7.58687 7.61752 7.67905 8.16079 8.31246 9.43274 9.97478 10.32462 11.35876 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.003521 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.644852 B = 7950.127128 C =10969.916494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.083 0.917 4 C 0.112 3.888 5 N -0.589 5.589 6 C 0.578 3.422 7 O -0.549 6.549 8 C 0.079 3.921 9 C -0.085 4.085 10 C -0.099 4.099 11 C 0.100 3.900 12 N -0.409 5.409 13 C -0.048 4.048 14 C -0.021 4.021 15 N -0.483 5.483 16 C 0.188 3.812 17 C 0.097 3.903 18 N -0.411 5.411 19 C 0.089 3.911 20 C 0.172 3.828 21 H 0.067 0.933 22 N -0.710 5.710 23 C -0.243 4.243 24 H 0.072 0.928 25 C -0.009 4.009 26 N -0.930 5.930 27 Si 0.905 3.095 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.184 0.816 39 H 0.177 0.823 40 H 0.210 0.790 41 H 0.171 0.829 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.386 0.614 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.468 -8.835 -11.625 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.102 0.898 4 C -0.011 4.011 5 N -0.320 5.320 6 C 0.365 3.635 7 O -0.427 6.427 8 C -0.059 4.059 9 C -0.106 4.106 10 C -0.127 4.127 11 C 0.003 3.997 12 N -0.089 5.089 13 C -0.177 4.177 14 C -0.166 4.166 15 N -0.200 5.200 16 C -0.093 4.093 17 C -0.065 4.065 18 N -0.122 5.122 19 C -0.036 4.036 20 C 0.059 3.941 21 H 0.085 0.915 22 N -0.349 5.349 23 C -0.374 4.374 24 H 0.090 0.910 25 C -0.205 4.205 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.218 1.218 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.177 0.823 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.195 0.805 40 H 0.226 0.774 41 H 0.188 0.812 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.221 0.779 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.434 -8.907 -11.759 17.510 hybrid contribution 0.149 -0.005 0.792 0.806 sum 9.582 -8.912 -10.966 17.074 Atomic orbital electron populations 1.21594 0.93799 1.01825 1.01758 1.22675 0.96377 0.99820 0.94696 0.89837 1.22352 0.82292 0.98365 0.98069 1.48463 1.11417 1.63010 1.09094 1.17359 0.82360 0.78438 0.85355 1.90770 1.82654 1.55553 1.13771 1.21304 0.95315 0.99927 0.89398 1.21993 0.90972 0.95161 1.02491 1.21251 0.99054 1.00188 0.92190 1.19147 0.86317 1.00512 0.93679 1.43129 1.09730 1.48834 1.07256 1.22970 1.00280 1.09670 0.84809 1.22423 0.92530 1.05254 0.96386 1.70348 1.29819 1.19705 1.00090 1.25343 0.81094 1.02715 1.00108 1.22795 0.86571 0.96336 1.00839 1.68102 1.22794 1.09141 1.12122 1.23491 1.02022 1.02199 0.75930 1.21368 0.92121 0.93712 0.86860 0.91466 1.42336 1.86288 1.06176 1.00117 1.19284 1.42404 0.92577 0.83180 0.90961 1.24738 1.02479 0.95417 0.97866 1.69667 1.56277 1.02836 1.28946 0.86152 0.77227 0.78200 0.84776 1.20488 1.21854 1.21837 0.92801 0.91363 0.93236 0.91287 0.90742 0.82342 0.83247 0.79852 0.80536 0.77380 0.81249 0.89952 0.91584 0.77930 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.29 37.16 0.35 -1.46 16 2 C -0.12 -1.78 3.27 -88.47 -0.29 -2.07 16 3 H 0.08 1.37 8.01 -51.92 -0.42 0.95 16 4 C 0.11 1.61 6.37 -2.53 -0.02 1.60 16 5 N -0.59 -9.42 3.34 -171.37 -0.57 -9.99 16 6 C 0.58 9.24 7.84 -12.27 -0.10 9.14 16 7 O -0.55 -9.59 16.57 5.33 0.09 -9.51 16 8 C 0.08 1.09 6.72 -83.01 -0.56 0.53 16 9 C -0.08 -0.89 9.62 -39.10 -0.38 -1.27 16 10 C -0.10 -0.84 9.57 -39.15 -0.37 -1.22 16 11 C 0.10 0.98 6.66 -83.41 -0.56 0.42 16 12 N -0.41 -3.91 2.98 -61.93 -0.18 -4.09 16 13 C -0.05 -0.44 10.86 -16.45 -0.18 -0.62 16 14 C -0.02 -0.20 11.85 -17.82 -0.21 -0.41 16 15 N -0.48 -5.44 11.24 -14.46 -0.16 -5.60 16 16 C 0.19 1.72 11.93 -89.58 -1.07 0.66 16 17 C 0.10 1.11 10.64 -17.36 -0.18 0.92 16 18 N -0.41 -5.72 6.85 -9.66 -0.07 -5.79 16 19 C 0.09 1.53 5.16 -2.92 -0.02 1.52 16 20 C 0.17 3.14 3.08 -66.10 -0.20 2.93 16 21 H 0.07 1.24 7.96 -51.93 -0.41 0.82 16 22 N -0.71 -16.32 5.15 -51.65 -0.27 -16.59 16 23 C -0.24 -6.26 9.96 -15.06 -0.15 -6.41 16 24 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 25 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 26 N -0.93 -26.68 13.06 55.49 0.72 -25.96 16 27 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.05 0.69 8.11 -51.93 -0.42 0.26 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 35 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 36 H 0.16 1.47 7.63 -52.48 -0.40 1.07 16 37 H 0.15 0.74 6.88 -52.49 -0.36 0.38 16 38 H 0.18 1.26 7.16 -52.49 -0.38 0.88 16 39 H 0.18 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.21 1.11 7.12 -52.49 -0.37 0.74 16 41 H 0.17 1.66 6.82 -52.48 -0.36 1.30 16 42 H 0.08 1.59 7.30 -51.93 -0.38 1.21 16 43 H 0.07 1.14 7.55 -51.93 -0.39 0.75 16 44 H 0.39 9.60 7.76 -40.82 -0.32 9.28 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -32.35 377.23 -9.66 -42.01 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.86 Total: 9.64 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -4.03 Total: 3.93 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -0.53 Total: -68.02 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.35 -9.66 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939530941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.615 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds