Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.91331 * 2 1 4 4 C 1.54908 * 111.00368 * 236.09952 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.34774 * 125.65138 * 204.15299 * 5 4 2 7 7 O 1.21542 * 119.99645 * 0.02562 * 6 5 4 8 8 C 1.47978 * 120.00318 * 179.97438 * 6 5 4 9 9 C 1.39444 * 119.65292 * 180.02562 * 8 6 5 10 10 C 1.38339 * 119.13743 * 179.97438 * 9 8 6 11 11 C 1.39289 * 118.43667 * 0.02562 * 10 9 8 12 12 N 1.39875 * 120.38672 * 179.97438 * 11 10 9 13 13 C 1.37161 * 126.48152 * 180.02562 * 12 11 10 14 14 C 1.34627 * 106.82855 * 179.97438 * 13 12 11 15 15 N 1.34153 * 108.21714 * 359.97438 * 14 13 12 16 16 C 1.30495 * 109.36141 * 359.72641 * 15 14 13 17 17 C 1.39268 * 119.21903 * 359.97438 * 11 10 9 18 18 N 1.31379 * 120.80364 * 359.74572 * 17 11 10 19 19 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 20 20 C 1.54325 * 107.30599 * 358.92448 * 19 5 4 21 21 H 1.08997 * 110.72163 * 96.18354 * 20 19 5 22 22 N 1.46497 * 110.72131 * 219.45483 * 20 19 5 23 23 C 1.36940 * 120.00145 * 268.52531 * 22 20 19 24 24 H 1.08003 * 119.99723 * 359.97438 * 23 22 20 25 25 C 1.38807 * 120.00230 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00088 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00129 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47159 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47504 * 119.99893 * 27 25 23 30 30 H 1.48504 * 109.47332 * 239.99957 * 27 25 23 31 31 H 1.09001 * 109.47276 * 182.45105 * 1 2 3 32 32 H 1.09003 * 109.46690 * 302.44645 * 1 2 3 33 33 H 1.08998 * 109.47248 * 62.44806 * 1 2 3 34 34 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 35 35 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 36 36 H 1.08003 * 120.42925 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.77787 * 180.02562 * 10 9 8 38 38 H 1.08002 * 126.58303 * 359.97438 * 13 12 11 39 39 H 1.08002 * 125.88943 * 180.02562 * 14 13 12 40 40 H 1.08002 * 125.71722 * 180.26655 * 16 15 14 41 41 H 1.08005 * 119.59543 * 180.02562 * 17 11 10 42 42 H 1.09004 * 109.85762 * 239.50064 * 19 5 4 43 43 H 1.08995 * 110.00297 * 118.43011 * 19 5 4 44 44 H 0.96996 * 120.00123 * 88.52155 * 22 20 19 45 45 H 0.97000 * 120.00075 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4280 -1.2430 -0.7761 6 6 4.4473 -1.5601 -1.5988 7 8 4.2982 -1.4967 -2.8034 8 6 5.7483 -1.9842 -1.0356 9 6 6.7982 -2.3100 -1.8935 10 6 8.0100 -2.7047 -1.3555 11 6 8.1332 -2.7616 0.0308 12 7 9.3398 -3.1558 0.6183 13 6 9.5984 -3.2561 1.9616 14 6 10.8745 -3.6671 2.0832 15 7 11.3863 -3.8161 0.8522 16 6 10.4755 -3.5190 -0.0339 17 6 7.0409 -2.4214 0.8249 18 7 5.9053 -2.0453 0.2816 19 6 3.4675 -1.2741 0.6959 20 6 2.0862 -0.8079 1.2022 21 1 1.4468 -1.6631 1.4210 22 7 2.2287 0.0496 2.3814 23 6 2.2001 -0.5002 3.6353 24 1 2.0721 -1.5659 3.7548 25 6 2.3346 0.3124 4.7526 26 7 2.4901 1.6112 4.6070 27 14 2.2949 -0.4375 6.4631 28 1 2.1111 -1.9072 6.3551 29 1 3.5741 -0.1490 7.1599 30 1 1.1684 0.1474 7.2340 31 1 -0.3634 -1.0267 0.0439 32 1 -0.3633 0.5514 0.8673 33 1 -0.3633 0.4753 -0.9111 34 1 1.4518 -1.6704 -1.4024 35 1 2.1541 -0.1725 -2.0842 36 1 6.6672 -2.2542 -2.9641 37 1 8.8410 -2.9627 -1.9953 38 1 8.9102 -3.0457 2.7670 39 1 11.3960 -3.8468 3.0118 40 1 10.6039 -3.5527 -1.1057 41 1 7.1298 -2.4629 1.9005 42 1 4.2427 -0.5997 1.0599 43 1 3.6662 -2.2883 1.0423 44 1 2.3433 1.0068 2.2741 45 1 2.5837 2.1790 5.3878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939530941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 79.950133 kcal Electronic energy + Delta-G solvation = -28937.798523 eV Core-core repulsion = 24956.645827 eV Total energy + Delta-G solvation = -3981.152695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.45138 -41.80263 -40.46881 -38.90618 -35.94178 -35.75831 -33.98769 -33.47981 -32.48497 -31.20818 -30.52622 -29.12805 -27.72830 -26.03943 -25.53620 -25.04670 -23.20686 -22.25948 -21.99116 -21.39030 -20.99570 -19.70703 -19.08277 -18.54124 -17.87545 -17.25775 -16.83548 -16.73563 -16.36519 -16.11370 -15.83726 -15.56598 -15.32680 -15.00624 -14.84429 -14.83885 -14.56346 -14.45131 -14.18133 -14.04708 -13.84791 -13.64202 -13.32125 -12.98310 -12.86399 -12.80790 -12.23339 -12.19109 -12.10816 -12.01248 -11.66693 -11.53538 -11.36166 -11.29268 -11.03251 -10.99624 -10.58580 -9.96923 -9.69339 -9.49939 -9.01081 -7.91496 -5.20538 -0.86625 -0.03688 0.94425 1.43734 1.50251 1.51501 1.60582 1.65545 1.84887 2.05131 2.58247 2.64257 2.90867 3.30881 3.32227 3.39717 3.47187 3.64625 3.72265 3.79224 3.84753 3.93016 4.00283 4.24876 4.37325 4.41432 4.44883 4.49011 4.54966 4.62355 4.67420 4.68483 4.73021 4.92716 5.01024 5.07827 5.13700 5.17190 5.21943 5.28194 5.36644 5.50819 5.58567 5.62109 6.05842 6.28609 6.37127 6.48596 6.88467 6.96301 7.36794 8.08416 8.32837 9.31731 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.003521 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.644852 B = 7950.127128 C =10969.916494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 H 0.070 0.930 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.576 3.424 7 O -0.567 6.567 8 C 0.049 3.951 9 C -0.076 4.076 10 C -0.083 4.083 11 C 0.111 3.889 12 N -0.414 5.414 13 C -0.057 4.057 14 C -0.034 4.034 15 N -0.517 5.517 16 C 0.192 3.808 17 C 0.084 3.916 18 N -0.441 5.441 19 C 0.112 3.888 20 C 0.165 3.835 21 H 0.070 0.930 22 N -0.719 5.719 23 C -0.235 4.235 24 H 0.079 0.921 25 C -0.069 4.069 26 N -0.968 5.968 27 Si 0.966 3.034 28 H -0.265 1.265 29 H -0.296 1.296 30 H -0.297 1.297 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.173 0.827 37 H 0.193 0.807 38 H 0.200 0.800 39 H 0.192 0.808 40 H 0.246 0.754 41 H 0.177 0.823 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.374 0.626 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.305 -10.487 -13.015 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.126 4.126 3 H 0.088 0.912 4 C -0.007 4.007 5 N -0.326 5.326 6 C 0.364 3.636 7 O -0.448 6.448 8 C -0.089 4.089 9 C -0.097 4.097 10 C -0.110 4.110 11 C 0.014 3.986 12 N -0.095 5.095 13 C -0.186 4.186 14 C -0.178 4.178 15 N -0.234 5.234 16 C -0.088 4.088 17 C -0.078 4.078 18 N -0.151 5.151 19 C -0.013 4.013 20 C 0.055 3.945 21 H 0.088 0.912 22 N -0.358 5.358 23 C -0.366 4.366 24 H 0.097 0.903 25 C -0.262 4.262 26 N -0.618 5.618 27 Si 0.796 3.204 28 H -0.189 1.189 29 H -0.224 1.224 30 H -0.225 1.225 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.190 0.810 37 H 0.210 0.790 38 H 0.217 0.783 39 H 0.209 0.791 40 H 0.262 0.738 41 H 0.194 0.806 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.207 0.793 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.269 -10.610 -13.175 19.789 hybrid contribution -0.009 0.446 1.144 1.228 sum 10.259 -10.164 -12.030 18.796 Atomic orbital electron populations 1.21550 0.92174 1.02576 1.02061 1.22566 0.97639 0.98726 0.93620 0.91203 1.22409 0.81891 0.98928 0.97512 1.48488 1.12243 1.63485 1.08378 1.17749 0.83000 0.77725 0.85139 1.90742 1.83187 1.56469 1.14355 1.21152 0.95265 1.02521 0.89976 1.22150 0.90696 0.94106 1.02747 1.21655 0.99328 0.98143 0.91912 1.19156 0.85881 0.99343 0.94217 1.43212 1.09702 1.49085 1.07476 1.23314 1.00523 1.09468 0.85297 1.22788 0.92977 1.05264 0.96803 1.70353 1.30990 1.21092 1.00974 1.26107 0.80259 1.01001 1.01450 1.22929 0.86642 0.96768 1.01498 1.67948 1.24324 1.10280 1.12592 1.22965 1.00187 1.01247 0.76932 1.21555 0.92891 0.93642 0.86447 0.91208 1.42440 1.86458 1.06050 1.00838 1.19636 1.39926 0.92803 0.84264 0.90332 1.25451 1.03638 0.95815 1.01248 1.69816 1.58640 1.04090 1.29302 0.85182 0.76450 0.78159 0.80617 1.18897 1.22354 1.22469 0.91580 0.93480 0.90722 0.89530 0.90114 0.81005 0.78987 0.78345 0.79076 0.73821 0.80563 0.92340 0.91795 0.79348 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.29 71.98 0.67 -2.61 16 2 C -0.11 -3.20 3.27 -9.40 -0.03 -3.23 16 3 H 0.07 2.32 8.01 -2.38 -0.02 2.30 16 4 C 0.11 3.18 6.37 86.85 0.55 3.73 16 5 N -0.60 -18.86 3.34 -814.36 -2.72 -21.58 16 6 C 0.58 18.13 7.84 86.83 0.68 18.81 16 7 O -0.57 -19.34 16.57 -3.85 -0.06 -19.40 16 8 C 0.05 1.30 6.72 41.87 0.28 1.58 16 9 C -0.08 -1.42 9.62 22.58 0.22 -1.21 16 10 C -0.08 -1.13 9.57 22.55 0.22 -0.92 16 11 C 0.11 1.93 6.66 38.36 0.26 2.18 16 12 N -0.41 -6.94 2.98 -349.83 -1.04 -7.99 16 13 C -0.06 -0.97 10.86 83.03 0.90 -0.07 16 14 C -0.03 -0.63 11.85 83.51 0.99 0.36 16 15 N -0.52 -10.69 11.24 -199.67 -2.25 -12.94 16 16 C 0.19 2.96 11.93 179.99 2.15 5.11 16 17 C 0.08 1.86 10.64 85.01 0.90 2.77 16 18 N -0.44 -12.21 6.85 -184.47 -1.26 -13.47 16 19 C 0.11 3.92 5.16 86.68 0.45 4.36 16 20 C 0.17 6.05 3.08 46.18 0.14 6.19 16 21 H 0.07 2.53 7.96 -2.39 -0.02 2.51 16 22 N -0.72 -33.75 5.15 -317.34 -1.63 -35.39 16 23 C -0.23 -12.16 9.96 84.03 0.84 -11.32 16 24 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 25 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 26 N -0.97 -57.01 13.06 21.65 0.28 -56.73 16 27 Si 0.97 44.19 29.55 68.60 2.03 46.21 16 28 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 29 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 30 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 31 H 0.07 1.56 8.11 -2.39 -0.02 1.54 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 2.12 8.04 -2.39 -0.02 2.10 16 35 H 0.08 2.17 8.03 -2.39 -0.02 2.15 16 36 H 0.17 2.74 7.63 -2.91 -0.02 2.72 16 37 H 0.19 0.89 6.88 -2.91 -0.02 0.87 16 38 H 0.20 2.51 7.16 -2.91 -0.02 2.49 16 39 H 0.19 2.62 8.06 -2.91 -0.02 2.59 16 40 H 0.25 1.52 7.12 -2.91 -0.02 1.50 16 41 H 0.18 3.41 6.82 -2.91 -0.02 3.39 16 42 H 0.06 2.34 7.30 -2.38 -0.02 2.32 16 43 H 0.06 2.24 7.55 -2.39 -0.02 2.22 16 44 H 0.37 19.25 7.76 -92.71 -0.72 18.53 16 45 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -71.13 377.23 3.33 -67.79 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.31 Total: 31.06 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 9.68 Total: 22.42 kcal Atomic # 7 Polarization: -139.47 SS G_CDS: -8.62 Total: -148.09 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.06 Total: -19.40 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -71.13 3.33 -67.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939530941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.742 kcal (2) G-P(sol) polarization free energy of solvation -71.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds