Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91134 * 2 1 4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3 5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1 6 6 C 1.34783 * 125.64363 * 204.09303 * 5 4 2 7 7 O 1.21563 * 120.00167 * 0.02562 * 6 5 4 8 8 C 1.47763 * 119.99541 * 180.02562 * 6 5 4 9 9 C 1.40601 * 126.04328 * 179.97438 * 8 6 5 10 10 N 1.31243 * 106.62587 * 179.97438 * 9 8 6 11 11 N 1.40109 * 107.17776 * 359.97438 * 10 9 8 12 12 C 1.40143 * 125.56692 * 180.02562 * 11 10 9 13 13 C 1.38855 * 120.06754 * 179.70241 * 12 11 10 14 14 C 1.38113 * 119.93110 * 179.74515 * 13 12 11 15 15 C 1.38284 * 120.06466 * 0.54923 * 14 13 12 16 16 C 1.38287 * 120.14204 * 359.70350 * 15 14 13 17 17 C 1.38114 * 120.06654 * 0.02562 * 16 15 14 18 18 N 1.28711 * 108.86264 * 359.76899 * 11 10 9 19 19 C 1.47017 * 108.70563 * 24.12485 * 5 4 2 20 20 C 1.54324 * 107.27321 * 358.94388 * 19 5 4 21 21 H 1.08995 * 110.72617 * 96.34448 * 20 19 5 22 22 N 1.46499 * 110.72129 * 219.44397 * 20 19 5 23 23 C 1.36931 * 120.00122 * 273.54344 * 22 20 19 24 24 H 1.08002 * 120.00098 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00429 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48501 * 109.46922 * 269.71949 * 27 25 23 29 29 H 1.48496 * 109.47354 * 29.72145 * 27 25 23 30 30 H 1.48501 * 109.47428 * 149.72253 * 27 25 23 31 31 H 1.09000 * 109.47369 * 296.10135 * 1 2 3 32 32 H 1.08999 * 109.47009 * 56.10715 * 1 2 3 33 33 H 1.09002 * 109.46507 * 176.10181 * 1 2 3 34 34 H 1.09001 * 110.36963 * 86.07513 * 4 2 1 35 35 H 1.09000 * 110.45879 * 323.79471 * 4 2 1 36 36 H 1.08000 * 126.68416 * 359.92511 * 9 8 6 37 37 H 1.08002 * 120.03343 * 359.97438 * 13 12 11 38 38 H 1.07997 * 119.96763 * 180.29387 * 14 13 12 39 39 H 1.08005 * 119.93262 * 179.71916 * 15 14 13 40 40 H 1.07993 * 119.96405 * 180.02562 * 16 15 14 41 41 H 1.07987 * 120.03593 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.88283 * 239.52716 * 19 5 4 43 43 H 1.09004 * 110.01221 * 118.43143 * 19 5 4 44 44 H 0.97001 * 119.99790 * 93.53861 * 22 20 19 45 45 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4478 -1.5615 -1.5938 7 8 4.3007 -1.4997 -2.7989 8 6 5.7454 -1.9858 -1.0286 9 6 6.8895 -2.3456 -1.7625 10 7 7.8164 -2.6537 -0.8860 11 7 7.2545 -2.4865 0.3866 12 6 7.9118 -2.7109 1.6038 13 6 7.2445 -2.5025 2.8035 14 6 7.8933 -2.7295 4.0014 15 6 9.2097 -3.1530 4.0069 16 6 9.8787 -3.3564 2.8138 17 6 9.2336 -3.1364 1.6126 18 7 6.0377 -2.0881 0.2551 19 6 3.4675 -1.2739 0.6962 20 6 2.0862 -0.8078 1.2024 21 1 1.4479 -1.6630 1.4241 22 7 2.2286 0.0498 2.3816 23 6 2.3033 -0.5088 3.6295 24 1 2.2576 -1.5817 3.7445 25 6 2.4377 0.3038 4.7469 26 7 2.4938 1.6113 4.6067 27 14 2.5474 -0.4588 6.4485 28 1 1.1836 -0.5885 7.0217 29 1 3.1726 -1.8021 6.3497 30 1 3.3732 0.4080 7.3272 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3632 -1.0253 -0.0699 34 1 2.1560 -0.1721 -2.0837 35 1 1.4526 -1.6705 -1.4041 36 1 6.9862 -2.3655 -2.8380 37 1 6.2179 -2.1668 2.7999 38 1 7.3733 -2.5722 4.9348 39 1 9.7164 -3.3255 4.9450 40 1 10.9066 -3.6875 2.8214 41 1 9.7563 -3.2958 0.6812 42 1 4.2426 -0.5994 1.0601 43 1 3.6663 -2.2881 1.0427 44 1 2.2700 1.0134 2.2783 45 1 2.5881 2.1792 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939712849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = 108.176782 kcal Electronic energy + Delta-G solvation = -29470.354795 eV Core-core repulsion = 25490.426099 eV Total energy + Delta-G solvation = -3979.928696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.89800 -41.08276 -40.15428 -38.95309 -35.89617 -34.99106 -34.28539 -33.35424 -32.47955 -31.99930 -30.69691 -29.17649 -27.76939 -26.08319 -25.59433 -24.63845 -23.37350 -22.65050 -22.37976 -21.40161 -20.76044 -19.35506 -19.07315 -18.27686 -17.73458 -17.36585 -17.13984 -16.88319 -16.36326 -16.26678 -15.71004 -15.50622 -15.35211 -15.09655 -14.72255 -14.63158 -14.52591 -14.12431 -14.02639 -13.75916 -13.57915 -13.25726 -13.01554 -12.86119 -12.83711 -12.63963 -12.53725 -12.22487 -12.14260 -12.04549 -11.97013 -11.94738 -11.68899 -11.50514 -11.40963 -11.31630 -10.93452 -10.11502 -9.79810 -9.40942 -9.05771 -7.93164 -5.22932 -0.62526 0.24369 0.47544 0.72278 0.79475 1.48976 1.49969 1.58175 1.81213 2.02616 2.49982 2.57497 2.67068 3.26658 3.38721 3.63660 3.76115 3.79258 3.80976 3.84923 3.90036 4.13096 4.22900 4.29937 4.33166 4.34720 4.38570 4.45955 4.52116 4.64080 4.67365 4.80229 4.89327 4.93393 4.95988 5.09486 5.14194 5.16728 5.21570 5.27897 5.34004 5.42190 5.46772 5.50223 5.55577 5.87810 6.25621 6.29290 6.53276 6.88528 7.34807 8.05602 8.30591 9.29783 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007099 B = 0.005043 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3943.171909 B = 5551.373285 C = 9236.342907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.617 3.383 7 O -0.555 6.555 8 C -0.074 4.074 9 C 0.087 3.913 10 N -0.288 5.288 11 N -0.162 5.162 12 C 0.120 3.880 13 C -0.127 4.127 14 C -0.105 4.105 15 C -0.104 4.104 16 C -0.093 4.093 17 C -0.111 4.111 18 N -0.205 5.205 19 C 0.101 3.899 20 C 0.171 3.829 21 H 0.070 0.930 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.077 0.923 25 C -0.067 4.067 26 N -0.967 5.967 27 Si 0.965 3.035 28 H -0.289 1.289 29 H -0.267 1.267 30 H -0.298 1.298 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.250 0.750 37 H 0.117 0.883 38 H 0.146 0.854 39 H 0.167 0.833 40 H 0.173 0.827 41 H 0.147 0.853 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.375 0.625 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.949 -10.640 -7.603 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.123 4.123 3 H 0.090 0.910 4 C -0.004 4.004 5 N -0.331 5.331 6 C 0.404 3.596 7 O -0.433 6.433 8 C -0.239 4.239 9 C -0.104 4.104 10 N -0.115 5.115 11 N -0.055 5.055 12 C 0.030 3.970 13 C -0.148 4.148 14 C -0.123 4.123 15 C -0.122 4.122 16 C -0.111 4.111 17 C -0.132 4.132 18 N -0.050 5.050 19 C -0.025 4.025 20 C 0.060 3.940 21 H 0.088 0.912 22 N -0.359 5.359 23 C -0.370 4.370 24 H 0.095 0.905 25 C -0.260 4.260 26 N -0.617 5.617 27 Si 0.794 3.206 28 H -0.216 1.216 29 H -0.191 1.191 30 H -0.225 1.225 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.266 0.734 37 H 0.135 0.865 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.191 0.809 41 H 0.164 0.836 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.208 0.792 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.586 -10.978 -7.045 17.446 hybrid contribution -0.531 0.616 0.291 0.864 sum 11.055 -10.362 -6.754 16.589 Atomic orbital electron populations 1.21563 0.91858 1.02837 1.02147 1.22549 0.97832 0.98735 0.93226 0.90988 1.22463 0.81212 0.99109 0.97611 1.48359 1.12557 1.64269 1.07893 1.16387 0.81039 0.77291 0.84927 1.90761 1.82628 1.56268 1.13661 1.23001 0.98887 1.13401 0.88654 1.25618 0.87581 0.94512 1.02667 1.77937 1.22863 1.22544 0.88111 1.48604 1.05123 1.45777 1.06002 1.17795 0.93598 1.06024 0.79631 1.21077 1.00978 1.01366 0.91369 1.21371 0.95974 0.97983 0.97021 1.21774 0.93598 0.96595 1.00224 1.21494 1.01619 0.97877 0.90127 1.21133 0.90842 0.99763 1.01426 1.74050 0.99984 1.10161 1.20790 1.22942 1.01324 1.00637 0.77583 1.21466 0.92052 0.93836 0.86635 0.91188 1.42448 1.87015 1.05135 1.01263 1.19560 1.40681 0.92104 0.84613 0.90521 1.25465 1.03487 0.95720 1.01296 1.69816 1.58858 1.03544 1.29505 0.85269 0.77295 0.77690 0.80334 1.21595 1.19131 1.22459 0.93417 0.90597 0.91289 0.89563 0.89122 0.73379 0.86459 0.83624 0.81580 0.80926 0.83569 0.93058 0.92515 0.79238 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.31 71.98 0.67 -2.59 16 2 C -0.10 -3.16 3.25 -9.40 -0.03 -3.19 16 3 H 0.07 2.40 8.00 -2.38 -0.02 2.38 16 4 C 0.12 3.29 6.37 86.85 0.55 3.84 16 5 N -0.60 -19.89 3.33 -815.28 -2.71 -22.61 16 6 C 0.62 20.92 7.86 86.76 0.68 21.60 16 7 O -0.56 -19.70 17.16 -3.91 -0.07 -19.77 16 8 C -0.07 -2.39 6.95 42.21 0.29 -2.10 16 9 C 0.09 2.30 11.91 85.36 1.02 3.32 16 10 N -0.29 -8.17 11.90 -56.32 -0.67 -8.84 16 11 N -0.16 -5.17 4.44 -51.14 -0.23 -5.40 16 12 C 0.12 3.41 6.74 38.11 0.26 3.67 16 13 C -0.13 -3.68 9.61 22.39 0.22 -3.47 16 14 C -0.10 -2.34 10.04 22.25 0.22 -2.11 16 15 C -0.10 -1.63 10.04 22.29 0.22 -1.40 16 16 C -0.09 -1.40 10.04 22.25 0.22 -1.18 16 17 C -0.11 -2.36 9.65 22.39 0.22 -2.15 16 18 N -0.20 -7.12 8.74 -48.59 -0.42 -7.55 16 19 C 0.10 3.74 5.28 86.73 0.46 4.20 16 20 C 0.17 6.39 3.06 46.18 0.14 6.53 16 21 H 0.07 2.58 8.02 -2.39 -0.02 2.56 16 22 N -0.72 -34.26 5.18 -317.33 -1.64 -35.91 16 23 C -0.24 -12.46 9.98 84.03 0.84 -11.62 16 24 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 25 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 26 N -0.97 -57.20 13.06 21.65 0.28 -56.92 16 27 Si 0.96 44.12 29.55 68.60 2.03 46.15 16 28 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 30 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 34 H 0.09 2.29 8.04 -2.39 -0.02 2.27 16 35 H 0.09 2.20 7.99 -2.39 -0.02 2.18 16 36 H 0.25 4.51 8.06 -2.91 -0.02 4.48 16 37 H 0.12 4.04 7.67 -2.91 -0.02 4.02 16 38 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.15 2.84 7.67 -2.92 -0.02 2.81 16 42 H 0.05 2.19 7.52 -2.39 -0.02 2.17 16 43 H 0.06 2.14 7.76 -2.38 -0.02 2.12 16 44 H 0.38 19.47 7.71 -92.71 -0.72 18.76 16 45 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -68.82 383.38 3.32 -65.50 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.30 Total: 35.22 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 6.45 Total: 10.13 kcal Atomic # 7 Polarization: -131.83 SS G_CDS: -5.39 Total: -137.22 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.07 Total: -19.77 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.82 3.32 -65.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939712849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.681 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds