Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.63905 * 2 1 4 4 C 1.54327 * 111.00252 * 236.92050 * 2 1 3 5 5 N 1.47024 * 107.26705 * 219.60125 * 4 2 1 6 6 C 1.34772 * 125.65035 * 178.84900 * 5 4 2 7 7 O 1.21519 * 119.99656 * 185.28511 * 6 5 4 8 8 C 1.48154 * 120.00073 * 5.28547 * 6 5 4 9 9 C 1.39942 * 120.89160 * 353.31922 * 8 6 5 10 10 C 1.38049 * 119.13461 * 179.97438 * 9 8 6 11 11 N 1.31851 * 120.98363 * 0.02562 * 10 9 8 12 12 C 1.32225 * 121.96926 * 0.02562 * 11 10 9 13 13 N 1.39848 * 119.62441 * 180.02562 * 12 11 10 14 14 C 1.37183 * 126.48382 * 359.97438 * 13 12 11 15 15 C 1.34613 * 106.82752 * 179.97438 * 14 13 12 16 16 N 1.34155 * 108.21829 * 359.97438 * 15 14 13 17 17 C 1.30479 * 109.37244 * 359.76157 * 16 15 14 18 18 C 1.38906 * 120.75347 * 359.97284 * 12 11 10 19 19 C 1.47429 * 108.69997 * 358.58766 * 5 4 2 20 20 C 1.54908 * 104.83136 * 24.35305 * 19 5 4 21 21 H 1.09003 * 111.00092 * 81.06754 * 20 19 5 22 22 N 1.46503 * 111.00585 * 204.87753 * 20 19 5 23 23 C 1.36934 * 120.00219 * 273.55069 * 22 20 19 24 24 H 1.08004 * 120.00156 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00008 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00290 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 120.00047 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47011 * 90.00376 * 27 25 23 29 29 H 1.48497 * 109.47048 * 210.00334 * 27 25 23 30 30 H 1.48495 * 109.47030 * 330.00693 * 27 25 23 31 31 H 1.08994 * 109.47375 * 296.86105 * 1 2 3 32 32 H 1.09005 * 109.47123 * 56.86241 * 1 2 3 33 33 H 1.09003 * 109.46752 * 176.85953 * 1 2 3 34 34 H 1.08998 * 109.99682 * 100.12544 * 4 2 1 35 35 H 1.08999 * 109.78390 * 338.95498 * 4 2 1 36 36 H 1.07993 * 120.43600 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.50280 * 180.29860 * 10 9 8 38 38 H 1.07997 * 126.58406 * 359.92170 * 14 13 12 39 39 H 1.07997 * 125.89291 * 180.02562 * 15 14 13 40 40 H 1.07996 * 125.72818 * 180.26217 * 17 16 15 41 41 H 1.08008 * 120.52786 * 180.02562 * 18 12 11 42 42 H 1.08997 * 110.36958 * 143.19357 * 19 5 4 43 43 H 1.08998 * 110.36219 * 265.51822 * 19 5 4 44 44 H 0.97003 * 119.99908 * 93.54012 * 22 20 19 45 45 H 0.97003 * 120.00497 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7864 -1.2072 5 7 3.2495 -1.5470 -0.7353 6 6 4.0005 -2.3785 -1.4842 7 8 4.8853 -3.0307 -0.9662 8 6 3.7473 -2.4973 -2.9391 9 6 2.6488 -1.8641 -3.5313 10 6 2.4477 -1.9987 -4.8905 11 7 3.2726 -2.7123 -5.6313 12 6 4.3223 -3.3286 -5.1148 13 7 5.1655 -4.0723 -5.9464 14 6 5.0280 -4.2486 -7.2999 15 6 6.0511 -5.0280 -7.6973 16 7 6.7965 -5.3224 -6.6215 17 6 6.2801 -4.7518 -5.5678 18 6 4.5976 -3.2449 -3.7559 19 6 3.4652 -1.2446 0.6915 20 6 2.0789 -0.7933 1.2152 21 1 1.4469 -1.6529 1.4384 22 7 2.2173 0.0721 2.3891 23 6 2.3123 -0.4793 3.6389 24 1 2.2855 -1.5523 3.7592 25 6 2.4439 0.3407 4.7512 26 7 2.4770 1.6482 4.6046 27 14 2.5727 -0.4116 6.4562 28 1 4.0002 -0.6615 6.7805 29 1 1.9947 0.5233 7.4547 30 1 1.8258 -1.6946 6.4889 31 1 -0.3634 0.4643 0.9167 32 1 -0.3634 0.5618 -0.8606 33 1 -0.3633 -1.0262 -0.0563 34 1 2.3849 -0.0962 -1.9951 35 1 1.3217 -1.4702 -1.5823 36 1 1.9673 -1.2778 -2.9330 37 1 1.6046 -1.5085 -5.3545 38 1 4.2482 -3.8412 -7.9262 39 1 6.2398 -5.3586 -8.7080 40 1 6.6712 -4.8115 -4.5629 41 1 5.4563 -3.7494 -3.3380 42 1 3.7992 -2.1363 1.2220 43 1 4.1929 -0.4408 0.8030 44 1 2.2419 1.0358 2.2811 45 1 2.5694 2.2213 5.3818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939768374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = 116.506418 kcal Electronic energy + Delta-G solvation = -28601.338669 eV Core-core repulsion = 24621.771174 eV Total energy + Delta-G solvation = -3979.567496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.70749 -41.03919 -39.60617 -37.82229 -34.91695 -34.24491 -33.21367 -32.50947 -31.05188 -30.48783 -29.65369 -28.00056 -26.79806 -25.17223 -24.52608 -23.80662 -22.29088 -21.34303 -21.28612 -20.36389 -20.05988 -18.82622 -17.39235 -17.33070 -16.52596 -16.39085 -16.14191 -15.90061 -15.51676 -14.99283 -14.78233 -14.31928 -14.27913 -14.20176 -14.01588 -13.87104 -13.72139 -13.38383 -13.15613 -12.96190 -12.91645 -12.49511 -11.97366 -11.78682 -11.20515 -11.19747 -11.12773 -10.85323 -10.75534 -10.59682 -10.49196 -10.40646 -10.32965 -10.04511 -9.91094 -9.83612 -9.23411 -9.11517 -8.85438 -8.63446 -7.18509 -5.92919 -3.24245 0.10476 0.32125 1.75681 1.98874 2.66003 2.77553 2.78930 3.35839 3.38264 3.42098 3.42640 3.75173 3.96063 4.15801 4.28281 4.35962 4.46029 4.47526 4.58610 4.77658 4.85696 4.94696 5.05924 5.07586 5.14130 5.24266 5.31501 5.32952 5.47331 5.53325 5.63744 5.68058 5.73481 5.82272 5.88111 5.99906 6.09177 6.19479 6.27112 6.31082 6.41421 6.43046 6.70650 6.73298 7.22382 7.41588 7.57481 7.61434 7.95517 8.24157 9.36752 9.87973 10.22739 11.28708 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.002185 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.742076 B =12810.830445 C =13818.584356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 H 0.088 0.912 4 C 0.093 3.907 5 N -0.599 5.599 6 C 0.565 3.435 7 O -0.528 6.528 8 C -0.048 4.048 9 C -0.186 4.186 10 C 0.132 3.868 11 N -0.487 5.487 12 C 0.340 3.660 13 N -0.410 5.410 14 C -0.027 4.027 15 C -0.031 4.031 16 N -0.478 5.478 17 C 0.196 3.804 18 C -0.126 4.126 19 C 0.079 3.921 20 C 0.177 3.823 21 H 0.067 0.933 22 N -0.708 5.708 23 C -0.250 4.250 24 H 0.073 0.927 25 C -0.006 4.006 26 N -0.929 5.929 27 Si 0.909 3.091 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.180 0.820 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.177 0.823 40 H 0.214 0.786 41 H 0.155 0.845 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.388 0.612 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 -5.750 -22.664 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.135 4.135 3 H 0.107 0.893 4 C -0.030 4.030 5 N -0.332 5.332 6 C 0.352 3.648 7 O -0.406 6.406 8 C -0.059 4.059 9 C -0.206 4.206 10 C -0.026 4.026 11 N -0.200 5.200 12 C 0.112 3.888 13 N -0.093 5.093 14 C -0.156 4.156 15 C -0.176 4.176 16 N -0.195 5.195 17 C -0.085 4.085 18 C -0.149 4.149 19 C -0.046 4.046 20 C 0.065 3.935 21 H 0.085 0.915 22 N -0.348 5.348 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.203 4.203 26 N -0.576 5.576 27 Si 0.739 3.261 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.197 0.803 37 H 0.192 0.808 38 H 0.199 0.801 39 H 0.194 0.806 40 H 0.230 0.770 41 H 0.173 0.827 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.222 0.778 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.424 -6.759 -23.090 24.101 hybrid contribution -0.383 0.585 1.663 1.804 sum -1.807 -6.173 -21.427 22.372 Atomic orbital electron populations 1.21694 0.93554 1.01696 1.02450 1.22539 0.96654 1.00060 0.94221 0.89335 1.22661 0.87701 0.94698 0.97947 1.48390 1.29086 1.42881 1.12823 1.17674 0.82077 0.80055 0.84989 1.90807 1.32408 1.44381 1.72976 1.20266 0.94953 0.96289 0.94398 1.23821 0.98861 1.00546 0.97379 1.22648 0.96350 0.93327 0.90264 1.66834 1.03263 1.08905 1.40991 1.17989 0.90283 0.93430 0.87088 1.43140 1.20859 1.37477 1.07803 1.22929 1.03986 1.05518 0.83186 1.22424 0.94308 1.02108 0.98725 1.70360 1.28479 1.22262 0.98373 1.25466 0.86225 0.95890 1.00961 1.21627 1.01855 1.00300 0.91077 1.23616 1.02336 1.01365 0.77235 1.21380 0.91740 0.93734 0.86671 0.91529 1.42272 1.86819 1.05079 1.00644 1.19226 1.43432 0.91953 0.83509 0.90924 1.24768 1.02094 0.95351 0.98113 1.69649 1.56323 1.02060 1.29536 0.86178 0.77803 0.78020 0.84095 1.21515 1.21673 1.20610 0.91021 0.92998 0.92758 0.90634 0.90366 0.80300 0.80821 0.80053 0.80623 0.76996 0.82719 0.90518 0.90889 0.77791 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.17 37.16 0.34 -1.16 16 2 C -0.12 -1.44 3.15 -88.78 -0.28 -1.72 16 3 H 0.09 1.16 8.00 -51.93 -0.42 0.74 16 4 C 0.09 0.94 4.49 -3.06 -0.01 0.92 16 5 N -0.60 -8.23 3.33 -171.89 -0.57 -8.80 16 6 C 0.56 8.12 7.83 -12.19 -0.10 8.03 16 7 O -0.53 -9.45 16.69 5.35 0.09 -9.36 16 8 C -0.05 -0.53 5.90 -104.68 -0.62 -1.15 16 9 C -0.19 -1.51 8.69 -39.01 -0.34 -1.85 16 10 C 0.13 0.98 11.17 -17.61 -0.20 0.78 16 11 N -0.49 -4.77 9.86 -12.34 -0.12 -4.89 16 12 C 0.34 3.59 7.50 -154.42 -1.16 2.43 16 13 N -0.41 -4.32 2.98 -63.85 -0.19 -4.51 16 14 C -0.03 -0.25 11.17 -16.44 -0.18 -0.44 16 15 C -0.03 -0.30 11.85 -17.82 -0.21 -0.51 16 16 N -0.48 -5.63 11.24 -14.47 -0.16 -5.79 16 17 C 0.20 2.03 11.90 -89.58 -1.07 0.97 16 18 C -0.13 -1.35 9.07 -38.82 -0.35 -1.70 16 19 C 0.08 1.34 6.63 -2.53 -0.02 1.33 16 20 C 0.18 3.03 3.13 -65.78 -0.21 2.82 16 21 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 22 N -0.71 -15.77 5.28 -51.35 -0.27 -16.04 16 23 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 24 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 26 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 27 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.08 0.60 6.76 -51.93 -0.35 0.25 16 35 H 0.08 0.62 6.39 -51.93 -0.33 0.29 16 36 H 0.18 1.12 2.93 -52.99 -0.16 0.97 16 37 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.21 1.60 7.04 -52.49 -0.37 1.23 16 41 H 0.16 1.57 6.45 -52.48 -0.34 1.23 16 42 H 0.08 1.44 7.99 -51.93 -0.41 1.03 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.39 9.16 7.71 -40.82 -0.31 8.84 16 45 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -32.83 374.57 -10.14 -42.97 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.61 Total: 8.10 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -4.64 Total: 1.90 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.59 Total: -65.65 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.83 -10.14 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939768374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.475 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds