Wall clock time and date at job start Sat Apr 11 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.63905 * 2 1 4 4 C 1.54327 * 111.00252 * 236.92050 * 2 1 3 5 5 N 1.47024 * 107.26705 * 219.60125 * 4 2 1 6 6 C 1.34772 * 125.65035 * 178.84900 * 5 4 2 7 7 O 1.21519 * 119.99656 * 185.28511 * 6 5 4 8 8 C 1.48154 * 120.00073 * 5.28547 * 6 5 4 9 9 C 1.39942 * 120.89160 * 353.31922 * 8 6 5 10 10 C 1.38049 * 119.13461 * 179.97438 * 9 8 6 11 11 N 1.31851 * 120.98363 * 0.02562 * 10 9 8 12 12 C 1.32225 * 121.96926 * 0.02562 * 11 10 9 13 13 N 1.39848 * 119.62441 * 180.02562 * 12 11 10 14 14 C 1.37183 * 126.48382 * 359.97438 * 13 12 11 15 15 C 1.34613 * 106.82752 * 179.97438 * 14 13 12 16 16 N 1.34155 * 108.21829 * 359.97438 * 15 14 13 17 17 C 1.30479 * 109.37244 * 359.76157 * 16 15 14 18 18 C 1.38906 * 120.75347 * 359.97284 * 12 11 10 19 19 C 1.47429 * 108.69997 * 358.58766 * 5 4 2 20 20 C 1.54908 * 104.83136 * 24.35305 * 19 5 4 21 21 H 1.09003 * 111.00092 * 81.06754 * 20 19 5 22 22 N 1.46503 * 111.00585 * 204.87753 * 20 19 5 23 23 C 1.36934 * 120.00219 * 273.55069 * 22 20 19 24 24 H 1.08004 * 120.00156 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00008 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00290 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 120.00047 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47011 * 90.00376 * 27 25 23 29 29 H 1.48497 * 109.47048 * 210.00334 * 27 25 23 30 30 H 1.48495 * 109.47030 * 330.00693 * 27 25 23 31 31 H 1.08994 * 109.47375 * 296.86105 * 1 2 3 32 32 H 1.09005 * 109.47123 * 56.86241 * 1 2 3 33 33 H 1.09003 * 109.46752 * 176.85953 * 1 2 3 34 34 H 1.08998 * 109.99682 * 100.12544 * 4 2 1 35 35 H 1.08999 * 109.78390 * 338.95498 * 4 2 1 36 36 H 1.07993 * 120.43600 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.50280 * 180.29860 * 10 9 8 38 38 H 1.07997 * 126.58406 * 359.92170 * 14 13 12 39 39 H 1.07997 * 125.89291 * 180.02562 * 15 14 13 40 40 H 1.07996 * 125.72818 * 180.26217 * 17 16 15 41 41 H 1.08008 * 120.52786 * 180.02562 * 18 12 11 42 42 H 1.08997 * 110.36958 * 143.19357 * 19 5 4 43 43 H 1.08998 * 110.36219 * 265.51822 * 19 5 4 44 44 H 0.97003 * 119.99908 * 93.54012 * 22 20 19 45 45 H 0.97003 * 120.00497 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7864 -1.2072 5 7 3.2495 -1.5470 -0.7353 6 6 4.0005 -2.3785 -1.4842 7 8 4.8853 -3.0307 -0.9662 8 6 3.7473 -2.4973 -2.9391 9 6 2.6488 -1.8641 -3.5313 10 6 2.4477 -1.9987 -4.8905 11 7 3.2726 -2.7123 -5.6313 12 6 4.3223 -3.3286 -5.1148 13 7 5.1655 -4.0723 -5.9464 14 6 5.0280 -4.2486 -7.2999 15 6 6.0511 -5.0280 -7.6973 16 7 6.7965 -5.3224 -6.6215 17 6 6.2801 -4.7518 -5.5678 18 6 4.5976 -3.2449 -3.7559 19 6 3.4652 -1.2446 0.6915 20 6 2.0789 -0.7933 1.2152 21 1 1.4469 -1.6529 1.4384 22 7 2.2173 0.0721 2.3891 23 6 2.3123 -0.4793 3.6389 24 1 2.2855 -1.5523 3.7592 25 6 2.4439 0.3407 4.7512 26 7 2.4770 1.6482 4.6046 27 14 2.5727 -0.4116 6.4562 28 1 4.0002 -0.6615 6.7805 29 1 1.9947 0.5233 7.4547 30 1 1.8258 -1.6946 6.4889 31 1 -0.3634 0.4643 0.9167 32 1 -0.3634 0.5618 -0.8606 33 1 -0.3633 -1.0262 -0.0563 34 1 2.3849 -0.0962 -1.9951 35 1 1.3217 -1.4702 -1.5823 36 1 1.9673 -1.2778 -2.9330 37 1 1.6046 -1.5085 -5.3545 38 1 4.2482 -3.8412 -7.9262 39 1 6.2398 -5.3586 -8.7080 40 1 6.6712 -4.8115 -4.5629 41 1 5.4563 -3.7494 -3.3380 42 1 3.7992 -2.1363 1.2220 43 1 4.1929 -0.4408 0.8030 44 1 2.2419 1.0358 2.2811 45 1 2.5694 2.2213 5.3818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939768374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:55 Heat of formation + Delta-G solvation = 96.820851 kcal Electronic energy + Delta-G solvation = -28602.192300 eV Core-core repulsion = 24621.771174 eV Total energy + Delta-G solvation = -3980.421126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.44544 -41.94953 -40.56410 -39.03588 -36.18650 -35.37870 -34.21828 -33.64522 -32.52162 -31.41555 -30.37567 -29.39831 -27.72287 -26.41199 -25.41832 -25.11655 -23.34943 -22.31411 -22.06948 -21.42430 -21.12295 -19.73688 -19.18675 -18.23720 -17.61628 -17.26444 -16.98191 -16.86887 -16.49232 -16.36633 -15.84421 -15.52414 -15.39695 -14.98714 -14.90217 -14.82608 -14.64861 -14.60000 -14.42845 -14.22522 -14.01334 -13.53357 -13.04885 -12.99647 -12.90180 -12.78011 -12.21568 -12.13173 -11.98020 -11.92918 -11.68872 -11.56524 -11.32717 -11.27905 -11.20441 -11.00305 -10.75788 -9.96165 -9.82050 -9.55903 -9.07313 -7.98191 -5.27195 -0.66203 -0.40966 1.03912 1.25526 1.46688 1.48346 1.55525 1.67108 1.72534 2.01622 2.53800 2.62038 2.99803 3.19282 3.34211 3.42993 3.45455 3.59866 3.72637 3.75754 3.84244 3.95213 4.13662 4.23016 4.25009 4.31327 4.42410 4.45185 4.49946 4.53132 4.60979 4.62510 4.79069 4.86759 4.90518 5.00168 5.04617 5.14855 5.20640 5.28008 5.38069 5.51566 5.56393 5.62691 5.98058 6.23708 6.33055 6.54247 6.83655 6.87477 7.31879 8.03507 8.26981 9.24036 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.002185 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.742076 B =12810.830445 C =13818.584356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 H 0.084 0.916 4 C 0.091 3.909 5 N -0.598 5.598 6 C 0.562 3.438 7 O -0.577 6.577 8 C -0.062 4.062 9 C -0.166 4.166 10 C 0.144 3.856 11 N -0.494 5.494 12 C 0.330 3.670 13 N -0.415 5.415 14 C -0.029 4.029 15 C -0.042 4.042 16 N -0.509 5.509 17 C 0.186 3.814 18 C -0.135 4.135 19 C 0.090 3.910 20 C 0.170 3.830 21 H 0.062 0.938 22 N -0.719 5.719 23 C -0.244 4.244 24 H 0.073 0.927 25 C -0.066 4.066 26 N -0.962 5.962 27 Si 0.965 3.035 28 H -0.292 1.292 29 H -0.294 1.294 30 H -0.270 1.270 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.204 0.796 37 H 0.221 0.779 38 H 0.201 0.799 39 H 0.199 0.801 40 H 0.228 0.772 41 H 0.149 0.851 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.379 0.621 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -5.577 -25.480 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.124 4.124 3 H 0.102 0.898 4 C -0.030 4.030 5 N -0.329 5.329 6 C 0.352 3.648 7 O -0.457 6.457 8 C -0.073 4.073 9 C -0.186 4.186 10 C -0.014 4.014 11 N -0.207 5.207 12 C 0.103 3.897 13 N -0.098 5.098 14 C -0.158 4.158 15 C -0.186 4.186 16 N -0.227 5.227 17 C -0.096 4.096 18 C -0.158 4.158 19 C -0.036 4.036 20 C 0.059 3.941 21 H 0.080 0.920 22 N -0.357 5.357 23 C -0.376 4.376 24 H 0.090 0.910 25 C -0.260 4.260 26 N -0.612 5.612 27 Si 0.795 3.205 28 H -0.219 1.219 29 H -0.221 1.221 30 H -0.195 1.195 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.221 0.779 37 H 0.237 0.763 38 H 0.218 0.782 39 H 0.216 0.784 40 H 0.244 0.756 41 H 0.166 0.834 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.212 0.788 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.734 -6.619 -25.963 27.053 hybrid contribution 0.302 0.502 2.441 2.510 sum -3.432 -6.118 -23.522 24.546 Atomic orbital electron populations 1.21671 0.91825 1.02800 1.02598 1.22464 0.97979 0.99376 0.92549 0.89785 1.23018 0.87021 0.95493 0.97479 1.48350 1.30156 1.43157 1.11275 1.18195 0.81184 0.79093 0.86360 1.90779 1.34466 1.46285 1.74192 1.19980 0.96915 0.98352 0.92068 1.24050 0.97441 0.99192 0.97920 1.23436 0.96432 0.91775 0.89802 1.66942 1.03163 1.09064 1.41516 1.17998 0.90826 0.94014 0.86837 1.43237 1.20860 1.37458 1.08228 1.23294 1.04285 1.05230 0.82984 1.22887 0.94203 1.02179 0.99350 1.70352 1.29619 1.23314 0.99370 1.25811 0.86429 0.95834 1.01479 1.21598 1.02033 1.00720 0.91468 1.23128 1.01538 0.99346 0.79623 1.21556 0.91791 0.93779 0.86957 0.91994 1.42363 1.86931 1.05189 1.01260 1.19538 1.41037 0.91969 0.85022 0.90953 1.25454 1.03393 0.95825 1.01282 1.69775 1.58560 1.03031 1.29821 0.85271 0.77348 0.77518 0.80403 1.21943 1.22061 1.19532 0.94060 0.89256 0.91602 0.86961 0.86765 0.77935 0.76259 0.78163 0.78409 0.75586 0.83370 0.93362 0.92847 0.78811 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.17 71.98 0.66 -1.78 16 2 C -0.10 -2.35 3.15 -9.60 -0.03 -2.38 16 3 H 0.08 2.02 8.00 -2.39 -0.02 2.00 16 4 C 0.09 1.46 4.49 86.73 0.39 1.85 16 5 N -0.60 -15.61 3.33 -816.04 -2.71 -18.32 16 6 C 0.56 15.82 7.83 86.88 0.68 16.50 16 7 O -0.58 -21.38 16.69 -3.78 -0.06 -21.44 16 8 C -0.06 -1.24 5.90 -19.90 -0.12 -1.36 16 9 C -0.17 -1.90 8.69 22.64 0.20 -1.71 16 10 C 0.14 1.36 11.17 84.65 0.95 2.31 16 11 N -0.49 -7.90 9.86 -192.95 -1.90 -9.80 16 12 C 0.33 6.38 7.50 132.77 1.00 7.37 16 13 N -0.42 -8.31 2.98 -355.91 -1.06 -9.37 16 14 C -0.03 -0.51 11.17 83.02 0.93 0.42 16 15 C -0.04 -0.79 11.85 83.51 0.99 0.20 16 16 N -0.51 -11.92 11.24 -199.69 -2.25 -14.16 16 17 C 0.19 3.85 11.90 179.99 2.14 5.99 16 18 C -0.14 -2.78 9.07 22.76 0.21 -2.58 16 19 C 0.09 3.10 6.63 86.85 0.58 3.68 16 20 C 0.17 5.78 3.13 46.38 0.15 5.93 16 21 H 0.06 2.17 8.04 -2.39 -0.02 2.15 16 22 N -0.72 -32.63 5.28 -316.38 -1.67 -34.30 16 23 C -0.24 -12.75 9.98 84.03 0.84 -11.91 16 24 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 25 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 26 N -0.96 -55.93 13.06 21.65 0.28 -55.64 16 27 Si 0.97 44.84 29.55 68.60 2.03 46.86 16 28 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 29 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 30 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.03 8.14 -2.38 -0.02 1.02 16 33 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.11 1.11 6.76 -2.39 -0.02 1.09 16 35 H 0.11 1.11 6.39 -2.39 -0.02 1.10 16 36 H 0.20 1.21 2.93 -3.38 -0.01 1.20 16 37 H 0.22 0.05 8.06 -2.91 -0.02 0.03 16 38 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.23 3.58 7.04 -2.91 -0.02 3.56 16 41 H 0.15 3.12 6.45 -2.91 -0.02 3.10 16 42 H 0.05 1.91 7.99 -2.39 -0.02 1.89 16 43 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.38 18.36 7.71 -92.71 -0.72 17.64 16 45 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -75.90 374.57 2.99 -72.91 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.33 Total: 23.92 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 10.01 Total: 19.35 kcal Atomic # 7 Polarization: -132.29 SS G_CDS: -9.31 Total: -141.60 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -75.90 2.99 -72.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939768374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.733 kcal (2) G-P(sol) polarization free energy of solvation -75.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds