Wall clock time and date at job start Sat Apr 11 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50052 * 2 1 4 4 C 1.53193 * 109.49775 * 120.06711 * 2 1 3 5 5 N 1.46927 * 108.77302 * 174.55110 * 4 2 1 6 6 C 1.36936 * 120.60574 * 126.42434 * 5 4 2 7 7 H 1.08005 * 119.99729 * 207.70176 * 6 5 4 8 8 C 1.38814 * 120.00157 * 27.69993 * 6 5 4 9 9 N 1.31623 * 119.99848 * 17.36350 * 8 6 5 10 10 Si 1.86797 * 120.00131 * 197.36696 * 8 6 5 11 11 H 1.48505 * 109.46906 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47417 * 119.99907 * 10 8 6 13 13 H 1.48498 * 109.47154 * 239.99764 * 10 8 6 14 14 C 1.46925 * 118.76433 * 306.44082 * 5 4 2 15 15 C 1.53191 * 108.77465 * 53.59328 * 14 5 4 16 16 C 1.53036 * 109.49557 * 239.93184 * 2 1 3 17 17 H 1.09001 * 109.45741 * 58.66754 * 16 2 1 18 18 N 1.46495 * 109.46281 * 298.70943 * 16 2 1 19 19 C 1.34782 * 119.99985 * 154.99927 * 18 16 2 20 20 O 1.21550 * 119.99780 * 359.97438 * 19 18 16 21 21 C 1.47852 * 119.99921 * 179.97438 * 19 18 16 22 22 C 1.40595 * 120.27745 * 359.72567 * 21 19 18 23 23 N 1.30817 * 121.51763 * 179.68563 * 22 21 19 24 24 C 1.33754 * 121.79773 * 0.60060 * 23 22 21 25 25 N 1.33886 * 120.61489 * 179.69932 * 24 23 22 26 26 C 1.31331 * 119.84657 * 180.02562 * 25 24 23 27 27 C 1.39762 * 120.77475 * 359.95673 * 26 25 24 28 28 N 1.31304 * 120.55499 * 0.02562 * 27 26 25 29 29 C 1.33667 * 119.71230 * 359.97438 * 28 27 26 30 30 C 1.38906 * 120.27542 * 180.02562 * 21 19 18 31 31 H 1.08997 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46800 * 59.99369 * 1 2 3 33 33 H 1.09002 * 109.46501 * 299.99970 * 1 2 3 34 34 H 1.08997 * 109.58570 * 294.37494 * 4 2 1 35 35 H 1.09002 * 109.58851 * 54.79083 * 4 2 1 36 36 H 0.97000 * 119.99935 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.58845 * 293.80333 * 14 5 4 38 38 H 1.09004 * 109.58650 * 173.37729 * 14 5 4 39 39 H 1.09002 * 109.49923 * 185.41732 * 15 14 5 40 40 H 1.09000 * 109.52929 * 65.32585 * 15 14 5 41 41 H 0.96995 * 120.00289 * 334.99305 * 18 16 2 42 42 H 1.08006 * 119.24277 * 359.97254 * 22 21 19 43 43 H 1.08004 * 119.61279 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.71865 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.99915 * 359.97336 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7235 1.2498 5 7 3.5046 -0.8296 1.1693 6 6 4.2936 -0.3797 2.1941 7 1 5.2989 -0.0402 1.9926 8 6 3.8013 -0.3600 3.4919 9 7 2.7378 -1.0702 3.8032 10 14 4.6482 0.6747 4.7964 11 1 5.8127 1.3731 4.1953 12 1 3.6917 1.6766 5.3316 13 1 5.1137 -0.2037 5.8996 14 6 4.1052 -1.4269 -0.0312 15 6 3.5709 -0.6948 -1.2662 16 6 2.0408 -0.7228 -1.2485 17 1 1.6582 -0.2239 -2.1389 18 7 1.5782 -2.1127 -1.2314 19 6 1.4501 -2.7946 -2.3869 20 8 1.7178 -2.2561 -3.4432 21 6 0.9837 -4.1975 -2.3695 22 6 0.6779 -4.8279 -1.1506 23 7 0.2577 -6.0659 -1.1075 24 6 0.1088 -6.7987 -2.2165 25 7 -0.3174 -8.0659 -2.1443 26 6 -0.4578 -8.7718 -3.2429 27 6 -0.1681 -8.2159 -4.4920 28 7 0.2510 -6.9753 -4.5896 29 6 0.4013 -6.2380 -3.4849 30 6 0.8501 -4.9058 -3.5570 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 0.5139 0.8900 34 1 1.7638 -0.1574 2.1389 35 1 1.6052 -1.7213 1.2985 36 1 2.3936 -1.0561 4.7100 37 1 3.8374 -2.4820 -0.0875 38 1 5.1896 -1.3248 0.0134 39 1 3.9334 -1.1892 -2.1674 40 1 3.9159 0.3391 -1.2546 41 1 1.3643 -2.5423 -0.3885 42 1 0.7881 -4.2757 -0.2289 43 1 -0.8014 -9.7938 -3.1803 44 1 -0.2900 -8.8117 -5.3845 45 1 1.0823 -4.4477 -4.5070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942134738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:38 Heat of formation + Delta-G solvation = 74.850254 kcal Electronic energy + Delta-G solvation = -29554.674612 eV Core-core repulsion = 25573.300769 eV Total energy + Delta-G solvation = -3981.373843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.02758 -40.22608 -38.56334 -37.55718 -35.36373 -34.36599 -32.65098 -32.20789 -31.91610 -31.29567 -29.57631 -26.60230 -25.92816 -25.51163 -25.08125 -23.17418 -22.49118 -21.67773 -20.98719 -19.57454 -18.90479 -18.59867 -18.03002 -16.99546 -16.60700 -15.94319 -15.67386 -15.28045 -15.15022 -14.98740 -14.82538 -14.19190 -13.93606 -13.78282 -13.56270 -13.33226 -13.20602 -13.16898 -12.97099 -12.66853 -12.20245 -12.11410 -12.08010 -11.51699 -11.28811 -11.13966 -11.03713 -10.99601 -10.76086 -10.41849 -10.21532 -10.03864 -10.01519 -9.81032 -9.68270 -9.55136 -9.49112 -9.11512 -8.79447 -8.52812 -6.74834 -5.86107 -3.27793 -0.44635 -0.13939 1.37874 2.06063 3.01961 3.06184 3.14998 3.33544 3.42459 3.44127 3.60668 3.67566 3.68747 4.21573 4.27010 4.42388 4.44772 4.57205 4.63651 4.86093 5.10675 5.24430 5.25395 5.37264 5.47585 5.48641 5.54850 5.60583 5.76647 5.94808 6.00771 6.06554 6.11686 6.26160 6.38376 6.44976 6.46305 6.54214 6.57662 6.71186 6.83098 6.89991 7.04198 7.20519 7.51255 7.53792 7.60050 7.74985 8.20096 8.37631 9.14075 9.77068 10.32775 11.22390 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.002766 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.094948 B =10121.801916 C =10891.972667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 H 0.081 0.919 4 C 0.177 3.823 5 N -0.592 5.592 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.147 3.853 15 C -0.146 4.146 16 C 0.160 3.840 17 H 0.077 0.923 18 N -0.700 5.700 19 C 0.562 3.438 20 O -0.536 6.536 21 C -0.172 4.172 22 C 0.196 3.804 23 N -0.453 5.453 24 C 0.272 3.728 25 N -0.417 5.417 26 C 0.111 3.889 27 C 0.071 3.929 28 N -0.405 5.405 29 C 0.017 3.983 30 C 0.037 3.963 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.015 0.985 36 H 0.254 0.746 37 H 0.016 0.984 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.403 0.597 42 H 0.179 0.821 43 H 0.185 0.815 44 H 0.183 0.817 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 -10.500 -15.072 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 H 0.099 0.901 4 C 0.051 3.949 5 N -0.314 5.314 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.218 1.218 14 C 0.020 3.980 15 C -0.186 4.186 16 C 0.056 3.944 17 H 0.095 0.905 18 N -0.352 5.352 19 C 0.347 3.653 20 O -0.415 6.415 21 C -0.179 4.179 22 C 0.018 3.982 23 N -0.162 5.162 24 C 0.032 3.968 25 N -0.132 5.132 26 C -0.068 4.068 27 C -0.106 4.106 28 N -0.120 5.120 29 C -0.109 4.109 30 C 0.009 3.991 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.241 0.759 42 H 0.195 0.805 43 H 0.201 0.799 44 H 0.200 0.800 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.963 -10.367 -14.729 19.693 hybrid contribution 0.462 0.489 0.394 0.780 sum -7.500 -9.878 -14.334 18.955 Atomic orbital electron populations 1.21736 0.95766 1.01238 1.01066 1.22157 0.94806 1.00929 0.97029 0.90086 1.20811 0.83219 0.96519 0.94360 1.44066 1.01601 1.69517 1.16216 1.19217 0.97744 1.35426 0.85759 0.91620 1.25015 0.98528 0.99036 0.96960 1.70014 1.25620 1.40175 1.18817 0.86246 0.78932 0.80019 0.81707 1.20289 1.21548 1.21752 1.20871 0.96686 0.94016 0.86391 1.22400 0.94776 1.01976 0.99491 1.20997 0.94535 0.79879 0.98949 0.90485 1.46122 1.65998 1.14702 1.08346 1.17755 0.78275 0.84639 0.84667 1.90776 1.50829 1.69332 1.30514 1.21287 1.04998 0.96896 0.94732 1.23444 0.87827 0.89326 0.97558 1.67522 1.13262 1.06438 1.28936 1.20135 0.95856 0.91994 0.88788 1.68349 1.09286 1.04176 1.31345 1.24343 0.93247 1.01053 0.88195 1.24226 0.94846 0.92030 0.99533 1.68595 1.07722 1.05976 1.29668 1.20210 1.03119 0.96337 0.91236 1.21773 0.87968 0.89682 0.99705 0.93234 0.93587 0.92449 0.88920 0.96753 0.93631 0.96588 0.92798 0.92448 0.91164 0.75909 0.80464 0.79859 0.80002 0.81623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 37.16 0.34 -1.66 16 2 C -0.13 -2.15 2.67 -90.50 -0.24 -2.39 16 3 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.18 3.71 4.30 -3.71 -0.02 3.69 16 5 N -0.59 -13.62 3.00 -172.31 -0.52 -14.13 16 6 C -0.25 -6.56 9.58 -15.06 -0.14 -6.70 16 7 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 8 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -24.67 11.19 55.49 0.62 -24.05 16 10 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 14 C 0.15 2.90 6.26 -3.71 -0.02 2.88 16 15 C -0.15 -2.48 5.77 -26.61 -0.15 -2.64 16 16 C 0.16 2.53 2.21 -67.89 -0.15 2.38 16 17 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 18 N -0.70 -10.15 3.55 -54.71 -0.19 -10.34 16 19 C 0.56 8.17 7.74 -12.32 -0.10 8.08 16 20 O -0.54 -9.15 16.04 5.32 0.09 -9.07 16 21 C -0.17 -2.20 5.89 -104.83 -0.62 -2.82 16 22 C 0.20 2.48 10.69 -17.10 -0.18 2.30 16 23 N -0.45 -6.53 10.39 -12.27 -0.13 -6.66 16 24 C 0.27 3.71 7.60 -157.60 -1.20 2.52 16 25 N -0.42 -5.07 10.55 -12.39 -0.13 -5.20 16 26 C 0.11 0.81 11.21 -17.20 -0.19 0.62 16 27 C 0.07 0.48 11.22 -17.21 -0.19 0.29 16 28 N -0.41 -4.32 10.46 -10.77 -0.11 -4.43 16 29 C 0.02 0.22 6.59 -84.78 -0.56 -0.34 16 30 C 0.04 0.45 9.68 -38.38 -0.37 0.08 16 31 H 0.05 0.67 7.53 -51.93 -0.39 0.28 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 35 H 0.01 0.31 6.64 -51.93 -0.34 -0.04 16 36 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.02 0.32 7.74 -51.93 -0.40 -0.08 16 38 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.40 5.66 4.76 -40.82 -0.19 5.47 16 42 H 0.18 1.96 6.38 -52.48 -0.33 1.62 16 43 H 0.18 0.48 8.06 -52.48 -0.42 0.06 16 44 H 0.18 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.17 1.93 7.70 -52.49 -0.40 1.53 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -32.61 366.78 -9.46 -42.07 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.70 Total: 4.04 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -3.89 Total: 6.28 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.46 Total: -64.81 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.61 -9.46 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942134738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.920 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds