Wall clock time and date at job start Sat Apr 11 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50052 * 2 1 4 4 C 1.53193 * 109.49775 * 120.06711 * 2 1 3 5 5 N 1.46927 * 108.77302 * 174.55110 * 4 2 1 6 6 C 1.36936 * 120.60574 * 126.42434 * 5 4 2 7 7 H 1.08005 * 119.99729 * 207.70176 * 6 5 4 8 8 C 1.38814 * 120.00157 * 27.69993 * 6 5 4 9 9 N 1.31623 * 119.99848 * 17.36350 * 8 6 5 10 10 Si 1.86797 * 120.00131 * 197.36696 * 8 6 5 11 11 H 1.48505 * 109.46906 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47417 * 119.99907 * 10 8 6 13 13 H 1.48498 * 109.47154 * 239.99764 * 10 8 6 14 14 C 1.46925 * 118.76433 * 306.44082 * 5 4 2 15 15 C 1.53191 * 108.77465 * 53.59328 * 14 5 4 16 16 C 1.53036 * 109.49557 * 239.93184 * 2 1 3 17 17 H 1.09001 * 109.45741 * 58.66754 * 16 2 1 18 18 N 1.46495 * 109.46281 * 298.70943 * 16 2 1 19 19 C 1.34782 * 119.99985 * 154.99927 * 18 16 2 20 20 O 1.21550 * 119.99780 * 359.97438 * 19 18 16 21 21 C 1.47852 * 119.99921 * 179.97438 * 19 18 16 22 22 C 1.40595 * 120.27745 * 359.72567 * 21 19 18 23 23 N 1.30817 * 121.51763 * 179.68563 * 22 21 19 24 24 C 1.33754 * 121.79773 * 0.60060 * 23 22 21 25 25 N 1.33886 * 120.61489 * 179.69932 * 24 23 22 26 26 C 1.31331 * 119.84657 * 180.02562 * 25 24 23 27 27 C 1.39762 * 120.77475 * 359.95673 * 26 25 24 28 28 N 1.31304 * 120.55499 * 0.02562 * 27 26 25 29 29 C 1.33667 * 119.71230 * 359.97438 * 28 27 26 30 30 C 1.38906 * 120.27542 * 180.02562 * 21 19 18 31 31 H 1.08997 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46800 * 59.99369 * 1 2 3 33 33 H 1.09002 * 109.46501 * 299.99970 * 1 2 3 34 34 H 1.08997 * 109.58570 * 294.37494 * 4 2 1 35 35 H 1.09002 * 109.58851 * 54.79083 * 4 2 1 36 36 H 0.97000 * 119.99935 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.58845 * 293.80333 * 14 5 4 38 38 H 1.09004 * 109.58650 * 173.37729 * 14 5 4 39 39 H 1.09002 * 109.49923 * 185.41732 * 15 14 5 40 40 H 1.09000 * 109.52929 * 65.32585 * 15 14 5 41 41 H 0.96995 * 120.00289 * 334.99305 * 18 16 2 42 42 H 1.08006 * 119.24277 * 359.97254 * 22 21 19 43 43 H 1.08004 * 119.61279 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.71865 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.99915 * 359.97336 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7235 1.2498 5 7 3.5046 -0.8296 1.1693 6 6 4.2936 -0.3797 2.1941 7 1 5.2989 -0.0402 1.9926 8 6 3.8013 -0.3600 3.4919 9 7 2.7378 -1.0702 3.8032 10 14 4.6482 0.6747 4.7964 11 1 5.8127 1.3731 4.1953 12 1 3.6917 1.6766 5.3316 13 1 5.1137 -0.2037 5.8996 14 6 4.1052 -1.4269 -0.0312 15 6 3.5709 -0.6948 -1.2662 16 6 2.0408 -0.7228 -1.2485 17 1 1.6582 -0.2239 -2.1389 18 7 1.5782 -2.1127 -1.2314 19 6 1.4501 -2.7946 -2.3869 20 8 1.7178 -2.2561 -3.4432 21 6 0.9837 -4.1975 -2.3695 22 6 0.6779 -4.8279 -1.1506 23 7 0.2577 -6.0659 -1.1075 24 6 0.1088 -6.7987 -2.2165 25 7 -0.3174 -8.0659 -2.1443 26 6 -0.4578 -8.7718 -3.2429 27 6 -0.1681 -8.2159 -4.4920 28 7 0.2510 -6.9753 -4.5896 29 6 0.4013 -6.2380 -3.4849 30 6 0.8501 -4.9058 -3.5570 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 0.5139 0.8900 34 1 1.7638 -0.1574 2.1389 35 1 1.6052 -1.7213 1.2985 36 1 2.3936 -1.0561 4.7100 37 1 3.8374 -2.4820 -0.0875 38 1 5.1896 -1.3248 0.0134 39 1 3.9334 -1.1892 -2.1674 40 1 3.9159 0.3391 -1.2546 41 1 1.3643 -2.5423 -0.3885 42 1 0.7881 -4.2757 -0.2289 43 1 -0.8014 -9.7938 -3.1803 44 1 -0.2900 -8.8117 -5.3845 45 1 1.0823 -4.4477 -4.5070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942134738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:36 Heat of formation + Delta-G solvation = 53.138811 kcal Electronic energy + Delta-G solvation = -29555.616091 eV Core-core repulsion = 25573.300769 eV Total energy + Delta-G solvation = -3982.315322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.85661 -41.40983 -39.65966 -38.80785 -36.19202 -35.95334 -33.98584 -33.51231 -33.14535 -32.34211 -31.11644 -27.63780 -27.47466 -26.68613 -26.24070 -24.17135 -23.84428 -22.98370 -22.42620 -20.54406 -20.19434 -19.63392 -18.96597 -18.69650 -17.62373 -16.93988 -16.82226 -16.63682 -16.25885 -16.11974 -15.85260 -15.62479 -15.36931 -15.28307 -14.76407 -14.63746 -14.49627 -14.30764 -13.94531 -13.89618 -13.58027 -13.09439 -13.01365 -12.92620 -12.87200 -12.76186 -12.55523 -12.47468 -12.14946 -11.98860 -11.78205 -11.67801 -11.46894 -11.16865 -11.08790 -10.62159 -10.52983 -10.38233 -10.02887 -9.93358 -8.63845 -7.85409 -5.28692 -1.26632 -0.95313 0.53142 1.20066 1.46717 1.50413 1.59106 1.93329 2.04303 2.35375 2.52855 2.79546 2.82113 2.91314 3.29408 3.33269 3.44631 3.57596 3.69584 3.73602 3.84293 3.91801 4.05845 4.20900 4.29534 4.32133 4.36948 4.59824 4.60730 4.67355 4.76064 4.77503 4.87521 4.98537 5.04412 5.11265 5.14793 5.22103 5.32782 5.38073 5.50821 5.57505 5.68365 5.78901 5.79922 6.28997 6.40261 6.42368 6.71524 7.02321 7.18562 7.88693 8.39150 9.20118 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.002766 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.094948 B =10121.801916 C =10891.972667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.075 0.925 4 C 0.185 3.815 5 N -0.607 5.607 6 C -0.260 4.260 7 H 0.061 0.939 8 C -0.044 4.044 9 N -0.927 5.927 10 Si 0.959 3.041 11 H -0.271 1.271 12 H -0.290 1.290 13 H -0.295 1.295 14 C 0.147 3.853 15 C -0.135 4.135 16 C 0.167 3.833 17 H 0.087 0.913 18 N -0.697 5.697 19 C 0.571 3.429 20 O -0.561 6.561 21 C -0.179 4.179 22 C 0.193 3.807 23 N -0.481 5.481 24 C 0.251 3.749 25 N -0.459 5.459 26 C 0.133 3.867 27 C 0.093 3.907 28 N -0.430 5.430 29 C 0.004 3.996 30 C 0.040 3.960 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.009 0.991 36 H 0.250 0.750 37 H 0.016 0.984 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.405 0.595 42 H 0.185 0.815 43 H 0.236 0.764 44 H 0.237 0.763 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 -12.120 -17.221 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.136 4.136 3 H 0.093 0.907 4 C 0.059 3.941 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.079 0.921 8 C -0.240 4.240 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.196 1.196 12 H -0.216 1.216 13 H -0.222 1.222 14 C 0.022 3.978 15 C -0.175 4.175 16 C 0.063 3.937 17 H 0.105 0.895 18 N -0.349 5.349 19 C 0.357 3.643 20 O -0.441 6.441 21 C -0.186 4.186 22 C 0.016 3.984 23 N -0.191 5.191 24 C 0.013 3.987 25 N -0.174 5.174 26 C -0.047 4.047 27 C -0.085 4.085 28 N -0.145 5.145 29 C -0.120 4.120 30 C 0.012 3.988 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.243 0.757 42 H 0.202 0.798 43 H 0.252 0.748 44 H 0.253 0.747 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.801 -11.947 -16.878 22.474 hybrid contribution 0.683 0.701 0.910 1.337 sum -8.118 -11.246 -15.968 21.150 Atomic orbital electron populations 1.21685 0.93608 1.02006 1.01911 1.21946 0.96509 0.99937 0.95208 0.90697 1.20649 0.82324 0.96130 0.94961 1.44288 1.02319 1.69966 1.16469 1.19454 0.97936 1.34919 0.86730 0.92116 1.25639 0.99458 1.00264 0.98633 1.70139 1.26850 1.41462 1.18798 0.85337 0.78114 0.78455 0.79284 1.19575 1.21638 1.22250 1.20923 0.96312 0.94189 0.86406 1.22262 0.95595 1.01591 0.98067 1.20860 0.93663 0.80580 0.98596 0.89545 1.46040 1.65953 1.14261 1.08611 1.17866 0.77403 0.85029 0.84017 1.90757 1.52080 1.70041 1.31244 1.21022 1.06452 0.95946 0.95163 1.23467 0.87963 0.89169 0.97765 1.67481 1.14322 1.07106 1.30142 1.20343 0.96631 0.92829 0.88944 1.68409 1.11246 1.03992 1.33795 1.25341 0.89814 1.02379 0.87143 1.25214 0.91071 0.90820 1.01355 1.68682 1.09377 1.07658 1.28769 1.20179 1.03774 0.96526 0.91540 1.21854 0.87393 0.89989 0.99532 0.92558 0.91599 0.92710 0.92416 0.97285 0.94115 0.96634 0.93482 0.91690 0.91077 0.75653 0.79835 0.74785 0.74703 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.05 71.98 0.65 -3.04 16 2 C -0.12 -3.83 2.67 -10.72 -0.03 -3.85 16 3 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 4 C 0.19 7.92 4.30 86.36 0.37 8.29 16 5 N -0.61 -28.47 3.00 -699.08 -2.09 -30.56 16 6 C -0.26 -13.77 9.58 84.03 0.81 -12.97 16 7 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 8 C -0.04 -2.36 4.91 84.86 0.42 -1.95 16 9 N -0.93 -52.00 11.19 21.65 0.24 -51.76 16 10 Si 0.96 43.89 29.59 68.60 2.03 45.92 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 14 C 0.15 5.87 6.26 86.36 0.54 6.41 16 15 C -0.14 -4.51 5.77 30.67 0.18 -4.33 16 16 C 0.17 5.16 2.21 45.02 0.10 5.26 16 17 H 0.09 2.60 7.58 -2.39 -0.02 2.58 16 18 N -0.70 -20.04 3.55 -445.27 -1.58 -21.63 16 19 C 0.57 16.49 7.74 86.79 0.67 17.17 16 20 O -0.56 -18.86 16.04 -3.87 -0.06 -18.92 16 21 C -0.18 -4.64 5.89 -20.00 -0.12 -4.76 16 22 C 0.19 5.05 10.69 85.42 0.91 5.96 16 23 N -0.48 -14.23 10.39 -192.75 -2.00 -16.23 16 24 C 0.25 6.80 7.60 134.97 1.03 7.82 16 25 N -0.46 -10.46 10.55 -193.10 -2.04 -12.50 16 26 C 0.13 1.42 11.21 85.14 0.95 2.38 16 27 C 0.09 0.89 11.22 85.14 0.96 1.84 16 28 N -0.43 -8.20 10.46 -187.98 -1.97 -10.17 16 29 C 0.00 0.10 6.59 40.34 0.27 0.36 16 30 C 0.04 0.99 9.68 23.05 0.22 1.22 16 31 H 0.06 1.47 7.53 -2.39 -0.02 1.45 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 2.89 6.04 -2.39 -0.01 2.88 16 35 H 0.01 0.40 6.64 -2.39 -0.02 0.38 16 36 H 0.25 13.67 8.31 -92.71 -0.77 12.89 16 37 H 0.02 0.63 7.74 -2.38 -0.02 0.61 16 38 H 0.05 1.90 7.93 -2.39 -0.02 1.89 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.41 11.49 4.76 -92.71 -0.44 11.05 16 42 H 0.18 4.27 6.38 -2.91 -0.02 4.25 16 43 H 0.24 -0.13 8.06 -2.91 -0.02 -0.15 16 44 H 0.24 -0.43 8.06 -2.91 -0.02 -0.45 16 45 H 0.17 3.94 7.70 -2.91 -0.02 3.91 16 Total: -1.00 -73.23 366.78 1.05 -72.18 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.60 Total: 17.87 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 7.92 Total: 25.79 kcal Atomic # 7 Polarization: -133.41 SS G_CDS: -9.44 Total: -142.84 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.06 Total: -18.92 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -73.23 1.05 -72.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942134738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.318 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds