Wall clock time and date at job start Sat Apr 11 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.49886 * 2 1 4 4 C 1.53195 * 109.52215 * 239.92098 * 2 1 3 5 5 N 1.46928 * 108.77723 * 185.39897 * 4 2 1 6 6 C 1.36939 * 120.62754 * 233.58773 * 5 4 2 7 7 H 1.07999 * 119.99728 * 152.60568 * 6 5 4 8 8 C 1.38812 * 120.00151 * 332.60051 * 6 5 4 9 9 N 1.31618 * 119.99715 * 159.32750 * 8 6 5 10 10 Si 1.86800 * 119.99981 * 339.33124 * 8 6 5 11 11 H 1.48496 * 109.47298 * 92.93821 * 10 8 6 12 12 H 1.48507 * 109.46910 * 212.94185 * 10 8 6 13 13 H 1.48498 * 109.46962 * 332.93501 * 10 8 6 14 14 C 1.46923 * 118.73903 * 53.60843 * 5 4 2 15 15 C 1.53165 * 108.76746 * 306.38910 * 14 5 4 16 16 C 1.53039 * 109.50222 * 120.07071 * 2 1 3 17 17 H 1.09004 * 109.45729 * 301.35609 * 16 2 1 18 18 N 1.46504 * 109.46175 * 61.32203 * 16 2 1 19 19 C 1.34772 * 119.99996 * 205.30863 * 18 16 2 20 20 O 1.21559 * 120.00231 * 359.71990 * 19 18 16 21 21 C 1.47849 * 120.00121 * 179.72722 * 19 18 16 22 22 C 1.40599 * 120.27664 * 359.97438 * 21 19 18 23 23 N 1.30815 * 121.52260 * 179.97438 * 22 21 19 24 24 C 1.33757 * 121.79401 * 0.02562 * 23 22 21 25 25 N 1.33894 * 120.62227 * 180.02562 * 24 23 22 26 26 C 1.31330 * 119.84924 * 179.97438 * 25 24 23 27 27 C 1.39764 * 120.77522 * 0.03285 * 26 25 24 28 28 N 1.31304 * 120.55383 * 359.94489 * 27 26 25 29 29 C 1.33664 * 119.70994 * 0.04600 * 28 27 26 30 30 C 1.38909 * 120.27865 * 179.72417 * 21 19 18 31 31 H 1.08999 * 109.46291 * 299.92913 * 1 2 3 32 32 H 1.08995 * 109.47130 * 59.93056 * 1 2 3 33 33 H 1.08995 * 109.47041 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.58664 * 305.18445 * 4 2 1 35 35 H 1.09002 * 109.58936 * 65.60869 * 4 2 1 36 36 H 0.97005 * 119.99584 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.58795 * 66.17943 * 14 5 4 38 38 H 1.09001 * 109.58514 * 186.60422 * 14 5 4 39 39 H 1.08997 * 109.50440 * 294.68392 * 15 14 5 40 40 H 1.09000 * 109.47845 * 174.59278 * 15 14 5 41 41 H 0.96993 * 119.99722 * 25.02913 * 18 16 2 42 42 H 1.08003 * 119.23625 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.61177 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.71788 * 179.97438 * 27 26 25 45 45 H 1.07991 * 120.99826 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2494 5 7 3.5053 -0.8284 -1.1691 6 6 4.2942 -0.3782 -2.1939 7 1 5.3009 -0.0426 -1.9930 8 6 3.8002 -0.3534 -3.4908 9 7 4.3581 0.4261 -4.3927 10 14 2.3434 -1.4261 -3.9561 11 1 1.0867 -0.6518 -3.7939 12 1 2.4791 -1.8592 -5.3701 13 1 2.3064 -2.6203 -3.0741 14 6 4.1059 -1.4256 0.0314 15 6 3.5709 -0.6941 1.2661 16 6 2.0409 -0.7228 1.2484 17 1 1.6580 -0.2242 2.1389 18 7 1.5790 -2.1130 1.2309 19 6 1.4451 -2.7933 2.3866 20 8 1.7124 -2.2549 3.4432 21 6 0.9732 -4.1943 2.3694 22 6 0.6620 -4.8226 1.1507 23 7 0.2430 -6.0611 1.1071 24 6 0.0887 -6.7923 2.2164 25 7 -0.3412 -8.0583 2.1445 26 6 -0.4868 -8.7626 3.2433 27 6 -0.1986 -8.2064 4.4927 28 7 0.2249 -6.9673 4.5901 29 6 0.3806 -6.2317 3.4850 30 6 0.8385 -4.9026 3.5567 31 1 -0.3632 0.5127 0.8907 32 1 -0.3633 0.5149 -0.8893 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6063 -1.7217 -1.2979 35 1 1.7644 -0.1580 -2.1389 36 1 4.0126 0.4437 -5.2990 37 1 3.8386 -2.4808 0.0874 38 1 5.1902 -1.3231 -0.0129 39 1 3.9155 0.3399 1.2542 40 1 3.9337 -1.1886 2.1672 41 1 1.3658 -2.5426 0.3878 42 1 0.7722 -4.2701 0.2292 43 1 -0.8343 -9.7833 3.1809 44 1 -0.3248 -8.8009 5.3854 45 1 1.0747 -4.4462 4.5065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942134739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:41 Heat of formation + Delta-G solvation = 56.397074 kcal Electronic energy + Delta-G solvation = -29713.215296 eV Core-core repulsion = 25731.041263 eV Total energy + Delta-G solvation = -3982.174033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.87212 -41.49472 -39.78916 -38.89264 -36.22702 -36.03691 -34.11634 -33.64040 -33.20522 -32.56838 -31.54052 -27.78422 -27.48812 -26.72948 -26.26721 -24.36067 -23.97675 -23.03243 -22.44591 -20.65151 -20.38277 -19.67745 -19.00936 -18.80409 -17.67603 -17.30865 -16.85974 -16.68766 -16.30671 -16.14697 -15.94494 -15.79433 -15.50447 -15.14489 -15.05603 -14.77596 -14.53880 -14.37364 -14.02279 -13.92891 -13.85464 -13.53400 -13.12017 -13.01952 -12.97866 -12.88405 -12.61292 -12.30205 -12.10206 -12.00110 -11.94587 -11.62593 -11.52837 -11.29365 -11.16721 -10.64362 -10.62038 -10.40113 -10.09784 -9.94933 -8.90933 -8.13984 -5.46420 -1.28135 -0.96632 0.51751 1.18395 1.32058 1.45067 1.52926 1.88275 2.02215 2.33772 2.43961 2.78428 2.80717 2.89395 3.06706 3.30577 3.34671 3.42641 3.55884 3.68313 3.75021 3.88776 3.95615 4.03941 4.26032 4.28712 4.30982 4.40153 4.54756 4.57600 4.62575 4.67602 4.75520 4.86588 4.89044 5.01818 5.04271 5.09797 5.20580 5.24569 5.31312 5.34773 5.52735 5.77428 5.89026 6.14850 6.27661 6.35368 6.69789 6.93328 6.99414 7.63951 8.02991 9.05886 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.003099 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.063519 B = 9032.852847 C = 9915.556403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.080 0.920 4 C 0.125 3.875 5 N -0.616 5.616 6 C -0.247 4.247 7 H 0.048 0.952 8 C -0.037 4.037 9 N -0.959 5.959 10 Si 0.943 3.057 11 H -0.268 1.268 12 H -0.318 1.318 13 H -0.251 1.251 14 C 0.149 3.851 15 C -0.138 4.138 16 C 0.168 3.832 17 H 0.093 0.907 18 N -0.701 5.701 19 C 0.574 3.426 20 O -0.558 6.558 21 C -0.179 4.179 22 C 0.192 3.808 23 N -0.481 5.481 24 C 0.251 3.749 25 N -0.459 5.459 26 C 0.133 3.867 27 C 0.093 3.907 28 N -0.431 5.431 29 C 0.004 3.996 30 C 0.040 3.960 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.260 0.740 37 H 0.035 0.965 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.405 0.595 42 H 0.189 0.811 43 H 0.235 0.765 44 H 0.236 0.764 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.918 -16.813 19.775 29.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.099 0.901 4 C 0.000 4.000 5 N -0.340 5.340 6 C -0.377 4.377 7 H 0.066 0.934 8 C -0.231 4.231 9 N -0.605 5.605 10 Si 0.772 3.228 11 H -0.195 1.195 12 H -0.247 1.247 13 H -0.175 1.175 14 C 0.024 3.976 15 C -0.177 4.177 16 C 0.064 3.936 17 H 0.111 0.889 18 N -0.352 5.352 19 C 0.360 3.640 20 O -0.437 6.437 21 C -0.186 4.186 22 C 0.015 3.985 23 N -0.190 5.190 24 C 0.013 3.987 25 N -0.174 5.174 26 C -0.047 4.047 27 C -0.085 4.085 28 N -0.145 5.145 29 C -0.121 4.121 30 C 0.013 3.987 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.243 0.757 42 H 0.206 0.794 43 H 0.251 0.749 44 H 0.252 0.748 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.846 -16.597 19.458 29.083 hybrid contribution 0.102 0.155 -0.697 0.721 sum -13.744 -16.442 18.761 28.482 Atomic orbital electron populations 1.21776 0.92991 1.02621 1.02557 1.21825 0.96902 1.00171 0.94111 0.90124 1.21479 0.83499 0.97701 0.97292 1.44430 1.01429 1.70663 1.17474 1.18820 0.97702 1.34685 0.86500 0.93438 1.25938 1.01589 0.99955 0.95642 1.69983 1.45976 1.40014 1.04533 0.85968 0.79991 0.81043 0.75837 1.19484 1.24711 1.17494 1.20983 0.96671 0.94761 0.85215 1.22263 0.95600 1.01700 0.98172 1.20852 0.93579 0.80580 0.98594 0.88875 1.46004 1.66385 1.14247 1.08609 1.17825 0.77294 0.84937 0.83964 1.90780 1.51802 1.69907 1.31248 1.21012 1.06480 0.95953 0.95158 1.23510 0.88049 0.89139 0.97798 1.67479 1.14352 1.07123 1.30058 1.20336 0.96616 0.92809 0.88955 1.68412 1.11211 1.04075 1.33749 1.25323 0.89856 1.02340 0.87153 1.25201 0.91099 0.90830 1.01355 1.68686 1.09321 1.07669 1.28861 1.20200 1.03708 0.96614 0.91531 1.21864 0.87309 0.89933 0.99631 0.91073 0.92426 0.91808 0.94370 0.92833 0.93069 0.94750 0.93192 0.91255 0.91082 0.75703 0.79427 0.74873 0.74816 0.81372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.06 71.98 0.65 -2.62 16 2 C -0.11 -3.20 2.67 -10.71 -0.03 -3.23 16 3 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 4 C 0.13 4.66 3.19 86.36 0.28 4.93 16 5 N -0.62 -26.89 2.77 -699.14 -1.94 -28.82 16 6 C -0.25 -13.59 10.03 84.03 0.84 -12.75 16 7 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 8 C -0.04 -2.09 5.23 84.86 0.44 -1.65 16 9 N -0.96 -59.55 13.97 21.65 0.30 -59.25 16 10 Si 0.94 44.22 24.35 68.60 1.67 45.89 16 11 H -0.27 -11.65 6.62 99.48 0.66 -10.99 16 12 H -0.32 -15.60 7.11 99.48 0.71 -14.90 16 13 H -0.25 -10.80 6.64 99.48 0.66 -10.14 16 14 C 0.15 5.43 6.26 86.35 0.54 5.97 16 15 C -0.14 -4.20 5.77 30.66 0.18 -4.02 16 16 C 0.17 4.56 2.21 45.02 0.10 4.66 16 17 H 0.09 2.46 7.57 -2.38 -0.02 2.45 16 18 N -0.70 -17.05 3.55 -445.26 -1.58 -18.63 16 19 C 0.57 14.45 7.74 86.79 0.67 15.12 16 20 O -0.56 -17.00 16.04 -3.90 -0.06 -17.06 16 21 C -0.18 -4.05 5.89 -20.00 -0.12 -4.16 16 22 C 0.19 4.28 10.69 85.42 0.91 5.19 16 23 N -0.48 -12.70 10.39 -192.74 -2.00 -14.71 16 24 C 0.25 6.21 7.60 134.96 1.03 7.23 16 25 N -0.46 -9.58 10.55 -193.10 -2.04 -11.62 16 26 C 0.13 1.22 11.21 85.14 0.95 2.18 16 27 C 0.09 0.76 11.22 85.14 0.96 1.71 16 28 N -0.43 -7.53 10.46 -187.99 -1.97 -9.49 16 29 C 0.00 0.09 6.59 40.34 0.27 0.35 16 30 C 0.04 0.90 9.68 23.05 0.22 1.12 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.31 7.54 -2.39 -0.02 1.29 16 34 H 0.04 1.29 5.57 -2.38 -0.01 1.28 16 35 H 0.05 2.28 4.50 -2.39 -0.01 2.27 16 36 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 37 H 0.03 1.18 7.74 -2.39 -0.02 1.16 16 38 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 41 H 0.41 9.11 4.76 -92.71 -0.44 8.67 16 42 H 0.19 3.36 6.38 -2.91 -0.02 3.34 16 43 H 0.24 -0.42 8.06 -2.91 -0.02 -0.44 16 44 H 0.24 -0.67 8.06 -2.91 -0.02 -0.69 16 45 H 0.17 3.55 7.70 -2.91 -0.02 3.52 16 Total: -1.00 -78.65 360.37 0.79 -77.86 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.51 Total: 15.79 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 7.90 Total: 20.05 kcal Atomic # 7 Polarization: -133.30 SS G_CDS: -9.22 Total: -142.51 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.06 Total: -17.06 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.67 Total: 45.89 kcal Total: -78.65 0.79 -77.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942134739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.253 kcal (2) G-P(sol) polarization free energy of solvation -78.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds