Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.99606 * 2 1 4 4 C 1.54307 * 109.77141 * 121.15374 * 2 1 3 5 5 H 1.08996 * 110.93279 * 23.47298 * 4 2 1 6 6 N 1.46505 * 110.59365 * 260.14631 * 4 2 1 7 7 C 1.36932 * 120.00496 * 160.19588 * 6 4 2 8 8 H 1.08005 * 119.99990 * 0.02562 * 7 6 4 9 9 C 1.38816 * 120.00326 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99718 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99951 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46936 * 90.00321 * 11 9 7 13 13 H 1.48506 * 109.46702 * 210.00011 * 11 9 7 14 14 H 1.48497 * 109.47293 * 329.99913 * 11 9 7 15 15 C 1.55157 * 102.86201 * 141.88939 * 4 2 1 16 16 C 1.54909 * 101.58231 * 324.30224 * 15 4 2 17 17 N 1.47015 * 109.88277 * 238.90215 * 2 1 3 18 18 C 1.34781 * 125.64788 * 61.68035 * 17 2 1 19 19 O 1.21550 * 119.99832 * 5.48389 * 18 17 2 20 20 C 1.47863 * 119.99930 * 185.48231 * 18 17 2 21 21 C 1.39657 * 120.08546 * 24.55108 * 20 18 17 22 22 C 1.38019 * 120.09155 * 179.97438 * 21 20 18 23 23 C 1.38163 * 120.27651 * 359.76057 * 22 21 20 24 24 C 1.39405 * 120.16957 * 0.51312 * 23 22 21 25 25 C 1.48424 * 120.05132 * 179.73670 * 24 23 22 26 26 N 1.33968 * 125.65305 * 179.69869 * 25 24 23 27 27 C 1.30679 * 109.78081 * 180.02562 * 26 25 24 28 28 N 1.34525 * 108.29251 * 0.02562 * 27 26 25 29 29 H 0.97000 * 126.74252 * 179.97438 * 28 27 26 30 30 N 1.31495 * 125.64265 * 359.73392 * 25 24 23 31 31 C 1.39093 * 119.90306 * 359.47105 * 24 23 22 32 32 H 1.08996 * 109.47231 * 179.64272 * 1 2 3 33 33 H 1.09002 * 109.47452 * 299.64284 * 1 2 3 34 34 H 1.09002 * 109.47399 * 59.64391 * 1 2 3 35 35 H 0.97002 * 119.99469 * 340.19758 * 6 4 2 36 36 H 0.97000 * 119.99827 * 179.97438 * 10 9 7 37 37 H 1.08999 * 111.00520 * 206.22775 * 15 4 2 38 38 H 1.09003 * 111.00683 * 82.37902 * 15 4 2 39 39 H 1.09004 * 110.36327 * 278.17440 * 16 15 4 40 40 H 1.08993 * 110.36966 * 155.85164 * 16 15 4 41 41 H 1.07997 * 119.94874 * 0.02562 * 21 20 18 42 42 H 1.08005 * 119.85636 * 180.02562 * 22 21 20 43 43 H 1.07997 * 119.91458 * 180.25306 * 23 22 21 44 44 H 1.08004 * 125.85596 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.13861 * 180.25399 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0520 -0.7512 1.2427 5 1 1.3049 -1.4512 1.6168 6 7 2.4471 0.1953 2.2888 7 6 2.5494 -0.2238 3.5884 8 1 2.3392 -1.2523 3.8422 9 6 2.9233 0.6732 4.5796 10 7 3.1791 1.9267 4.2703 11 14 3.0635 0.1012 6.3523 12 1 4.4456 -0.3769 6.6103 13 1 2.7528 1.2321 7.2633 14 1 2.1037 -1.0061 6.5926 15 6 3.2888 -1.5100 0.6933 16 6 2.8191 -1.8762 -0.7367 17 7 2.0300 -0.7141 -1.1838 18 6 1.8085 -0.3613 -2.4657 19 8 1.2299 0.6773 -2.7189 20 6 2.2695 -1.2376 -3.5638 21 6 2.4546 -2.6034 -3.3389 22 6 2.8843 -3.4216 -4.3640 23 6 3.1290 -2.8965 -5.6183 24 6 2.9533 -1.5338 -5.8539 25 6 3.2225 -0.9716 -7.2009 26 7 3.0861 0.3141 -7.5519 27 6 3.4048 0.4651 -8.8102 28 7 3.7576 -0.7357 -9.3035 29 1 4.0418 -0.9297 -10.2105 30 7 3.6339 -1.6531 -8.2475 31 6 2.5201 -0.7026 -4.8261 32 1 -0.3633 -1.0276 -0.0064 33 1 -0.3634 0.5083 0.8932 34 1 -0.3634 0.5194 -0.8868 35 1 2.6363 1.1190 2.0607 36 1 3.4400 2.5536 4.9630 37 1 3.4896 -2.4064 1.2801 38 1 4.1638 -0.8607 0.6629 39 1 2.1971 -2.7711 -0.7142 40 1 3.6777 -2.0264 -1.3912 41 1 2.2604 -3.0201 -2.3616 42 1 3.0258 -4.4774 -4.1859 43 1 3.4611 -3.5428 -6.4173 44 1 3.3872 1.3945 -9.3601 45 1 2.3789 0.3530 -5.0055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986650469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 106.807976 kcal Electronic energy + Delta-G solvation = -28545.146718 eV Core-core repulsion = 24565.158666 eV Total energy + Delta-G solvation = -3979.988052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.43176 -40.43931 -38.74852 -37.24770 -34.26002 -33.55201 -32.40587 -31.68299 -31.13660 -30.90927 -30.12892 -28.92341 -25.36065 -24.57978 -23.97143 -23.13559 -22.91361 -21.83388 -20.92494 -20.12574 -19.14189 -18.70324 -17.26480 -16.93862 -16.53446 -16.11671 -15.85477 -15.78167 -15.10545 -14.70330 -14.67133 -14.31857 -13.83739 -13.77318 -13.59118 -13.37954 -13.08603 -12.82464 -12.71429 -12.57873 -12.22255 -11.96831 -11.86542 -11.62002 -11.30849 -11.12418 -11.00925 -10.86934 -10.78355 -10.54882 -10.47093 -10.35938 -10.25236 -10.01590 -9.77079 -9.62711 -9.16242 -8.94752 -8.82104 -8.38462 -7.02417 -5.80743 -3.11235 0.48467 0.91198 1.41652 2.20446 2.50312 3.01956 3.12135 3.41594 3.46857 3.48763 3.59358 3.76735 4.19171 4.45771 4.53845 4.55405 4.71319 4.84772 4.96975 5.07881 5.18090 5.28347 5.34820 5.44400 5.46988 5.57167 5.65065 5.68537 5.79800 5.80024 5.83728 5.93834 6.09421 6.13592 6.14802 6.16397 6.20991 6.30994 6.46627 6.57519 6.59154 6.59760 6.62840 6.76534 6.93715 7.63273 7.66130 7.74605 8.33423 8.36852 9.47968 10.02636 10.37314 11.41385 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024535 B = 0.002103 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.969646 B =13310.764774 C =13655.011259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.157 4.157 16 C 0.093 3.907 17 N -0.603 5.603 18 C 0.571 3.429 19 O -0.534 6.534 20 C -0.128 4.128 21 C -0.080 4.080 22 C -0.131 4.131 23 C -0.064 4.064 24 C -0.031 4.031 25 C 0.275 3.725 26 N -0.531 5.531 27 C 0.267 3.733 28 N -0.485 5.485 29 H 0.443 0.557 30 N -0.307 5.307 31 C -0.018 4.018 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.226 0.774 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 -10.245 -26.829 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.199 4.199 16 C -0.030 4.030 17 N -0.336 5.336 18 C 0.360 3.640 19 O -0.412 6.412 20 C -0.131 4.131 21 C -0.099 4.099 22 C -0.149 4.149 23 C -0.084 4.084 24 C -0.033 4.033 25 C -0.004 4.004 26 N -0.259 5.259 27 C -0.032 4.032 28 N -0.204 5.204 29 H 0.289 0.711 30 N -0.137 5.137 31 C -0.039 4.039 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.162 0.838 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.242 0.758 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.505 -10.184 -26.600 28.487 hybrid contribution 0.527 0.116 -0.005 0.540 sum 1.032 -10.068 -26.605 28.465 Atomic orbital electron populations 1.22044 0.94804 1.01637 1.02747 1.21923 0.94415 0.97095 0.84162 0.90212 1.21248 0.93512 0.91634 0.87105 0.91648 1.42353 1.81135 1.08958 1.03078 1.19191 1.39394 0.95003 0.83811 0.90986 1.24775 1.02157 0.95632 0.98166 1.69666 1.52626 1.02841 1.32548 0.86179 0.77720 0.77358 0.84823 1.21693 1.21773 1.20703 1.23618 1.01537 1.01843 0.92861 1.22679 0.94550 0.88333 0.97412 1.48429 1.51627 1.28792 1.04775 1.17830 0.79735 0.85187 0.81283 1.90778 1.42797 1.24431 1.83233 1.19878 1.04695 0.94203 0.94316 1.22056 0.94806 0.92631 1.00370 1.21040 1.01161 1.00352 0.92367 1.21338 0.96039 0.93527 0.97502 1.17294 1.04814 0.93207 0.88015 1.22267 0.96858 0.87630 0.93673 1.70580 1.24673 1.18393 1.12208 1.26163 0.94172 0.91924 0.90980 1.48124 1.52758 1.06439 1.13055 0.71139 1.78196 1.25547 1.14349 0.95599 1.21277 0.91888 1.00971 0.89770 0.93017 0.90980 0.92127 0.77937 0.93372 0.90459 0.90509 0.91376 0.90767 0.83782 0.84723 0.84900 0.75775 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.10 37.16 0.34 -2.24 16 2 C 0.13 2.27 3.18 -66.97 -0.21 2.05 16 3 H 0.08 1.61 7.68 -51.93 -0.40 1.21 16 4 C 0.18 3.33 3.11 -66.10 -0.21 3.12 16 5 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 6 N -0.71 -17.21 5.25 -51.66 -0.27 -17.48 16 7 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 11 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 C -0.16 -2.52 6.76 -24.58 -0.17 -2.69 16 16 C 0.09 1.20 4.99 -2.53 -0.01 1.19 16 17 N -0.60 -9.47 3.06 -164.13 -0.50 -9.97 16 18 C 0.57 9.43 7.39 -12.32 -0.09 9.34 16 19 O -0.53 -10.60 15.85 5.32 0.08 -10.51 16 20 C -0.13 -1.73 5.67 -105.01 -0.59 -2.32 16 21 C -0.08 -0.84 8.07 -39.13 -0.32 -1.15 16 22 C -0.13 -1.16 10.02 -39.69 -0.40 -1.55 16 23 C -0.06 -0.63 9.68 -39.17 -0.38 -1.01 16 24 C -0.03 -0.37 5.87 -104.95 -0.62 -0.98 16 25 C 0.28 3.30 7.77 -156.63 -1.22 2.08 16 26 N -0.53 -6.03 10.82 -12.38 -0.13 -6.16 16 27 C 0.27 1.73 13.11 -90.70 -1.19 0.54 16 28 N -0.49 -3.01 7.44 29.52 0.22 -2.80 16 29 H 0.44 0.91 8.96 -182.34 -1.63 -0.72 16 30 N -0.31 -3.20 12.42 32.10 0.40 -2.80 16 31 C -0.02 -0.24 9.22 -38.84 -0.36 -0.60 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.05 7.07 -51.93 -0.37 0.69 16 35 H 0.39 10.11 7.50 -40.82 -0.31 9.80 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 0.72 6.83 -51.93 -0.35 0.36 16 40 H 0.07 0.85 6.83 -51.93 -0.35 0.49 16 41 H 0.14 1.31 4.59 -52.49 -0.24 1.07 16 42 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.13 1.12 7.82 -52.49 -0.41 0.71 16 44 H 0.23 0.27 8.06 -52.48 -0.42 -0.16 16 45 H 0.15 2.17 7.61 -52.49 -0.40 1.77 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -35.57 375.77 -11.46 -47.03 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.96 Total: 8.32 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -5.66 Total: -1.23 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: 0.43 Total: -66.11 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.57 -11.46 -47.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986650469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.839 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds