Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.99606 * 2 1 4 4 C 1.54307 * 109.77141 * 121.15374 * 2 1 3 5 5 H 1.08996 * 110.93279 * 23.47298 * 4 2 1 6 6 N 1.46505 * 110.59365 * 260.14631 * 4 2 1 7 7 C 1.36932 * 120.00496 * 160.19588 * 6 4 2 8 8 H 1.08005 * 119.99990 * 0.02562 * 7 6 4 9 9 C 1.38816 * 120.00326 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99718 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99951 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46936 * 90.00321 * 11 9 7 13 13 H 1.48506 * 109.46702 * 210.00011 * 11 9 7 14 14 H 1.48497 * 109.47293 * 329.99913 * 11 9 7 15 15 C 1.55157 * 102.86201 * 141.88939 * 4 2 1 16 16 C 1.54909 * 101.58231 * 324.30224 * 15 4 2 17 17 N 1.47015 * 109.88277 * 238.90215 * 2 1 3 18 18 C 1.34781 * 125.64788 * 61.68035 * 17 2 1 19 19 O 1.21550 * 119.99832 * 5.48389 * 18 17 2 20 20 C 1.47863 * 119.99930 * 185.48231 * 18 17 2 21 21 C 1.39657 * 120.08546 * 24.55108 * 20 18 17 22 22 C 1.38019 * 120.09155 * 179.97438 * 21 20 18 23 23 C 1.38163 * 120.27651 * 359.76057 * 22 21 20 24 24 C 1.39405 * 120.16957 * 0.51312 * 23 22 21 25 25 C 1.48424 * 120.05132 * 179.73670 * 24 23 22 26 26 N 1.33968 * 125.65305 * 179.69869 * 25 24 23 27 27 C 1.30679 * 109.78081 * 180.02562 * 26 25 24 28 28 N 1.34525 * 108.29251 * 0.02562 * 27 26 25 29 29 H 0.97000 * 126.74252 * 179.97438 * 28 27 26 30 30 N 1.31495 * 125.64265 * 359.73392 * 25 24 23 31 31 C 1.39093 * 119.90306 * 359.47105 * 24 23 22 32 32 H 1.08996 * 109.47231 * 179.64272 * 1 2 3 33 33 H 1.09002 * 109.47452 * 299.64284 * 1 2 3 34 34 H 1.09002 * 109.47399 * 59.64391 * 1 2 3 35 35 H 0.97002 * 119.99469 * 340.19758 * 6 4 2 36 36 H 0.97000 * 119.99827 * 179.97438 * 10 9 7 37 37 H 1.08999 * 111.00520 * 206.22775 * 15 4 2 38 38 H 1.09003 * 111.00683 * 82.37902 * 15 4 2 39 39 H 1.09004 * 110.36327 * 278.17440 * 16 15 4 40 40 H 1.08993 * 110.36966 * 155.85164 * 16 15 4 41 41 H 1.07997 * 119.94874 * 0.02562 * 21 20 18 42 42 H 1.08005 * 119.85636 * 180.02562 * 22 21 20 43 43 H 1.07997 * 119.91458 * 180.25306 * 23 22 21 44 44 H 1.08004 * 125.85596 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.13861 * 180.25399 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0520 -0.7512 1.2427 5 1 1.3049 -1.4512 1.6168 6 7 2.4471 0.1953 2.2888 7 6 2.5494 -0.2238 3.5884 8 1 2.3392 -1.2523 3.8422 9 6 2.9233 0.6732 4.5796 10 7 3.1791 1.9267 4.2703 11 14 3.0635 0.1012 6.3523 12 1 4.4456 -0.3769 6.6103 13 1 2.7528 1.2321 7.2633 14 1 2.1037 -1.0061 6.5926 15 6 3.2888 -1.5100 0.6933 16 6 2.8191 -1.8762 -0.7367 17 7 2.0300 -0.7141 -1.1838 18 6 1.8085 -0.3613 -2.4657 19 8 1.2299 0.6773 -2.7189 20 6 2.2695 -1.2376 -3.5638 21 6 2.4546 -2.6034 -3.3389 22 6 2.8843 -3.4216 -4.3640 23 6 3.1290 -2.8965 -5.6183 24 6 2.9533 -1.5338 -5.8539 25 6 3.2225 -0.9716 -7.2009 26 7 3.0861 0.3141 -7.5519 27 6 3.4048 0.4651 -8.8102 28 7 3.7576 -0.7357 -9.3035 29 1 4.0418 -0.9297 -10.2105 30 7 3.6339 -1.6531 -8.2475 31 6 2.5201 -0.7026 -4.8261 32 1 -0.3633 -1.0276 -0.0064 33 1 -0.3634 0.5083 0.8932 34 1 -0.3634 0.5194 -0.8868 35 1 2.6363 1.1190 2.0607 36 1 3.4400 2.5536 4.9630 37 1 3.4896 -2.4064 1.2801 38 1 4.1638 -0.8607 0.6629 39 1 2.1971 -2.7711 -0.7142 40 1 3.6777 -2.0264 -1.3912 41 1 2.2604 -3.0201 -2.3616 42 1 3.0258 -4.4774 -4.1859 43 1 3.4611 -3.5428 -6.4173 44 1 3.3872 1.3945 -9.3601 45 1 2.3789 0.3530 -5.0055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986650469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = 83.481773 kcal Electronic energy + Delta-G solvation = -28546.158218 eV Core-core repulsion = 24565.158666 eV Total energy + Delta-G solvation = -3980.999552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.08246 -41.62814 -39.77955 -38.60888 -35.96720 -34.42349 -33.50287 -32.87956 -32.34664 -31.99340 -31.15318 -30.36376 -26.92483 -25.56412 -25.24031 -24.37243 -23.85820 -22.86809 -21.76805 -21.53046 -20.27184 -19.41880 -19.10769 -18.05752 -17.55550 -17.34795 -16.76682 -16.53498 -16.44813 -15.99197 -15.73253 -15.43848 -15.23091 -15.12758 -14.76266 -14.56489 -14.49941 -14.08035 -13.84062 -13.58493 -13.29954 -13.24344 -13.13897 -12.90002 -12.82548 -12.61491 -12.46863 -12.24406 -12.11098 -12.01252 -11.65301 -11.59670 -11.45615 -11.19388 -11.06227 -10.98788 -10.85828 -10.07307 -9.66639 -9.61759 -9.00061 -7.91289 -5.21340 -0.32945 0.01008 0.79213 1.51171 1.52816 1.61073 1.63438 1.70424 1.87217 2.04468 2.59714 2.86461 2.97608 3.32461 3.43084 3.59328 3.70343 3.80129 3.97282 4.01620 4.04058 4.12128 4.19255 4.23481 4.37809 4.41466 4.45440 4.52129 4.65775 4.70302 4.71666 4.91492 4.94105 5.05488 5.07668 5.10665 5.22090 5.25480 5.27684 5.34212 5.38742 5.43709 5.49132 5.58153 5.80569 6.21303 6.28650 6.50329 7.00153 7.06588 7.34947 8.07285 8.30995 9.32400 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024535 B = 0.002103 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.969646 B =13310.764774 C =13655.011259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.132 3.868 3 H 0.042 0.958 4 C 0.172 3.828 5 H 0.077 0.923 6 N -0.730 5.730 7 C -0.233 4.233 8 H 0.087 0.913 9 C -0.080 4.080 10 N -0.973 5.973 11 Si 0.974 3.026 12 H -0.288 1.288 13 H -0.302 1.302 14 H -0.265 1.265 15 C -0.149 4.149 16 C 0.098 3.902 17 N -0.602 5.602 18 C 0.567 3.433 19 O -0.582 6.582 20 C -0.144 4.144 21 C -0.073 4.073 22 C -0.113 4.113 23 C -0.057 4.057 24 C -0.040 4.040 25 C 0.252 3.748 26 N -0.582 5.582 27 C 0.281 3.719 28 N -0.470 5.470 29 H 0.462 0.538 30 N -0.323 5.323 31 C -0.036 4.036 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.165 0.835 42 H 0.178 0.822 43 H 0.151 0.849 44 H 0.275 0.725 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -14.299 -28.387 31.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.061 0.939 4 C 0.062 3.938 5 H 0.095 0.905 6 N -0.369 5.369 7 C -0.364 4.364 8 H 0.105 0.895 9 C -0.272 4.272 10 N -0.624 5.624 11 Si 0.804 3.196 12 H -0.215 1.215 13 H -0.229 1.229 14 H -0.189 1.189 15 C -0.190 4.190 16 C -0.023 4.023 17 N -0.334 5.334 18 C 0.358 3.642 19 O -0.463 6.463 20 C -0.147 4.147 21 C -0.092 4.092 22 C -0.131 4.131 23 C -0.077 4.077 24 C -0.043 4.043 25 C -0.027 4.027 26 N -0.310 5.310 27 C -0.017 4.017 28 N -0.190 5.190 29 H 0.311 0.689 30 N -0.154 5.154 31 C -0.057 4.057 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.183 0.817 42 H 0.195 0.805 43 H 0.169 0.831 44 H 0.290 0.710 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.964 -14.329 -28.220 31.664 hybrid contribution 0.401 1.365 0.251 1.445 sum 1.365 -12.964 -27.968 30.857 Atomic orbital electron populations 1.21934 0.93980 1.02739 1.01552 1.21656 0.95015 0.95472 0.85087 0.93950 1.21455 0.95099 0.91066 0.86139 0.90478 1.42551 1.81510 1.09148 1.03740 1.19637 1.36759 0.95316 0.84699 0.89548 1.25612 1.03417 0.95857 1.02290 1.69846 1.55098 1.04148 1.33286 0.85120 0.77841 0.76797 0.79867 1.21497 1.22947 1.18916 1.23441 0.98895 1.01533 0.95132 1.22917 0.95723 0.88288 0.95380 1.48445 1.51649 1.29360 1.03978 1.18394 0.78910 0.84972 0.81939 1.90745 1.45004 1.26662 1.83932 1.19660 1.06800 0.95277 0.92977 1.22244 0.94106 0.90980 1.01848 1.21474 0.98664 1.01987 0.90951 1.21635 0.94872 0.92568 0.98655 1.17473 1.04740 0.94139 0.87911 1.22362 0.98078 0.88201 0.94104 1.70552 1.26803 1.18845 1.14840 1.27038 0.91625 0.93201 0.89842 1.48061 1.51825 1.05873 1.13251 0.68857 1.78060 1.25692 1.15567 0.96059 1.21070 0.93805 1.00071 0.90758 0.90639 0.92091 0.93375 0.79852 0.94224 0.88515 0.92978 0.87253 0.88494 0.81736 0.80506 0.83146 0.71005 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 9.10 71.98 0.66 -4.23 16 2 C 0.13 4.81 3.18 45.34 0.14 4.95 16 3 H 0.04 1.85 7.68 -2.39 -0.02 1.83 16 4 C 0.17 6.37 3.11 46.17 0.14 6.51 16 5 H 0.08 2.71 7.84 -2.39 -0.02 2.69 16 6 N -0.73 -35.84 5.25 -317.35 -1.67 -37.50 16 7 C -0.23 -12.32 9.98 84.04 0.84 -11.48 16 8 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 9 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 10 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 11 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 13 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 15 C -0.15 -4.49 6.76 31.99 0.22 -4.28 16 16 C 0.10 2.22 4.99 86.86 0.43 2.65 16 17 N -0.60 -18.59 3.06 -791.46 -2.43 -21.02 16 18 C 0.57 19.14 7.39 86.79 0.64 19.78 16 19 O -0.58 -24.66 15.85 -3.87 -0.06 -24.72 16 20 C -0.14 -3.83 5.67 -20.11 -0.11 -3.95 16 21 C -0.07 -1.29 8.07 22.56 0.18 -1.11 16 22 C -0.11 -1.50 10.02 22.20 0.22 -1.28 16 23 C -0.06 -0.98 9.68 22.53 0.22 -0.76 16 24 C -0.04 -0.95 5.87 -20.08 -0.12 -1.07 16 25 C 0.25 6.00 7.77 137.48 1.07 7.07 16 26 N -0.58 -13.31 10.82 -193.07 -2.09 -15.40 16 27 C 0.28 3.20 13.11 180.37 2.37 5.56 16 28 N -0.47 -4.94 7.44 -60.51 -0.45 -5.39 16 29 H 0.46 0.76 8.96 -213.10 -1.91 -1.15 16 30 N -0.32 -6.33 12.42 -52.34 -0.65 -6.98 16 31 C -0.04 -1.01 9.22 22.75 0.21 -0.80 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 1.74 7.07 -2.39 -0.02 1.72 16 35 H 0.37 20.34 7.50 -92.71 -0.70 19.65 16 36 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 39 H 0.11 1.68 6.83 -2.38 -0.02 1.66 16 40 H 0.10 1.84 6.83 -2.39 -0.02 1.82 16 41 H 0.17 2.15 4.59 -2.91 -0.01 2.13 16 42 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 43 H 0.15 2.04 7.82 -2.91 -0.02 2.02 16 44 H 0.27 -0.16 8.06 -2.91 -0.02 -0.19 16 45 H 0.12 3.90 7.61 -2.91 -0.02 3.87 16 Total: -1.00 -83.53 375.77 1.00 -82.53 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -1.55 Total: 27.15 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 7.57 Total: 13.55 kcal Atomic # 7 Polarization: -138.83 SS G_CDS: -7.00 Total: -145.82 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.72 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -83.53 1.00 -82.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986650469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.013 kcal (2) G-P(sol) polarization free energy of solvation -83.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds