Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.99463 * 2 1 4 4 C 1.54321 * 109.88218 * 238.90203 * 2 1 3 5 5 H 1.08994 * 110.87120 * 144.33951 * 4 2 1 6 6 N 1.46505 * 110.71980 * 21.13762 * 4 2 1 7 7 C 1.36931 * 119.99788 * 160.02489 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99751 * 11 9 7 13 13 H 1.48490 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00028 * 11 9 7 15 15 C 1.55164 * 102.93990 * 262.77729 * 4 2 1 16 16 C 1.54904 * 101.57948 * 324.49322 * 15 4 2 17 17 N 1.47027 * 109.88251 * 121.09158 * 2 1 3 18 18 C 1.34773 * 125.64820 * 300.51595 * 17 2 1 19 19 O 1.21514 * 120.00092 * 359.97438 * 18 17 2 20 20 C 1.48171 * 119.99839 * 179.97438 * 18 17 2 21 21 C 1.39229 * 119.68377 * 179.97438 * 20 18 17 22 22 C 1.38709 * 119.18702 * 179.97438 * 21 20 18 23 23 C 1.38404 * 118.55922 * 359.97438 * 22 21 20 24 24 C 1.39261 * 119.29950 * 0.02562 * 23 22 21 25 25 N 1.39818 * 119.62198 * 180.02562 * 24 23 22 26 26 C 1.35843 * 126.10322 * 179.71826 * 25 24 23 27 27 C 1.35273 * 107.61306 * 179.87533 * 26 25 24 28 28 C 1.39958 * 107.96740 * 0.38856 * 27 26 25 29 29 N 1.30817 * 108.36979 * 359.75683 * 28 27 26 30 30 N 1.31987 * 120.76136 * 359.74385 * 24 23 22 31 31 H 1.09000 * 109.47329 * 181.10213 * 1 2 3 32 32 H 1.09006 * 109.47303 * 301.09688 * 1 2 3 33 33 H 1.08994 * 109.47338 * 61.09992 * 1 2 3 34 34 H 0.97000 * 119.99792 * 340.02283 * 6 4 2 35 35 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00882 * 82.57234 * 15 4 2 37 37 H 1.09003 * 111.00073 * 206.42275 * 15 4 2 38 38 H 1.09007 * 110.36131 * 155.84800 * 16 15 4 39 39 H 1.08996 * 110.37536 * 278.06265 * 16 15 4 40 40 H 1.08005 * 120.41010 * 359.94922 * 21 20 18 41 41 H 1.08010 * 120.72174 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.35436 * 179.97438 * 23 22 21 43 43 H 1.08006 * 126.19757 * 359.97438 * 26 25 24 44 44 H 1.08003 * 126.01571 * 180.14480 * 27 26 25 45 45 H 1.08001 * 125.81115 * 179.72599 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9650 -0.2844 -1.6210 6 7 1.0292 -0.8027 -2.2875 7 6 1.3877 -1.0418 -3.5872 8 1 2.4264 -1.1917 -3.8421 9 6 0.4153 -1.0979 -4.5763 10 7 -0.8506 -0.9158 -4.2656 11 14 0.9035 -1.4317 -6.3482 12 1 1.5801 -2.7507 -6.4351 13 1 -0.3107 -1.4404 -7.2029 14 1 1.8294 -0.3688 -6.8152 15 6 2.3518 -2.1696 -0.6922 16 6 2.8568 -1.8497 0.7368 17 7 2.0300 -0.7140 1.1840 18 6 1.7742 -0.3852 2.4657 19 8 1.0756 0.5764 2.7185 20 6 2.3449 -1.1962 3.5667 21 6 2.0768 -0.8502 4.8884 22 6 2.6159 -1.6169 5.9109 23 6 3.4046 -2.7043 5.5774 24 6 3.6327 -2.9944 4.2346 25 7 4.4280 -4.0916 3.8901 26 6 4.7307 -4.4962 2.6291 27 6 5.5223 -5.5886 2.7288 28 6 5.7037 -5.8678 4.0882 29 7 5.0498 -4.9733 4.7836 30 7 3.1023 -2.2489 3.2833 31 1 -0.3634 -1.0275 0.0198 32 1 -0.3634 0.5308 0.8800 33 1 -0.3634 0.4966 -0.8996 34 1 0.0962 -0.6685 -2.0585 35 1 -1.5301 -0.9546 -4.9568 36 1 1.4452 -2.7737 -0.6602 37 1 3.1270 -2.6620 -1.2794 38 1 2.7087 -2.7080 1.3924 39 1 3.9096 -1.5686 0.7132 40 1 1.4570 0.0048 5.1148 41 1 2.4243 -1.3708 6.9450 42 1 3.8392 -3.3208 6.3504 43 1 4.4007 -4.0292 1.7129 44 1 5.9377 -6.1492 1.9044 45 1 6.2841 -6.6832 4.4939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986939004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 130.776004 kcal Electronic energy + Delta-G solvation = -29468.340207 eV Core-core repulsion = 25489.391486 eV Total energy + Delta-G solvation = -3978.948720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.89618 -40.74193 -39.44605 -37.50965 -34.32085 -33.96639 -33.12067 -31.50088 -30.79968 -30.58512 -29.84154 -28.84051 -25.29239 -25.19426 -24.41874 -23.44624 -22.54322 -21.50169 -21.22932 -20.06180 -18.92623 -18.29937 -17.67546 -17.28131 -16.47155 -16.07586 -15.98901 -15.58449 -15.46782 -14.91434 -14.68972 -14.37143 -13.98641 -13.87040 -13.65991 -13.48989 -13.38271 -13.05891 -12.89395 -12.64005 -12.42519 -12.08990 -11.79079 -11.54992 -11.26341 -11.19655 -10.98388 -10.84069 -10.82119 -10.51453 -10.47197 -10.30417 -10.17332 -9.93996 -9.67438 -9.58515 -9.49765 -8.93089 -8.68126 -8.39512 -7.02791 -5.82170 -3.11929 0.19001 0.51426 1.69248 1.73922 2.45868 2.69541 2.94365 3.41234 3.45984 3.46971 3.57606 3.76324 4.06501 4.41579 4.52516 4.54919 4.59806 4.68172 4.86789 5.01177 5.12295 5.15924 5.23468 5.35752 5.44609 5.55110 5.58882 5.61429 5.64260 5.70497 5.74050 5.86596 5.94904 6.08847 6.16097 6.20133 6.21999 6.35508 6.53943 6.58033 6.67460 6.73358 6.79761 6.95198 6.98115 7.43428 7.65162 7.65595 8.16484 8.36377 9.47931 10.02868 10.37959 11.40274 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.003013 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.582158 B = 9289.390192 C =11173.470942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 H 0.075 0.925 4 C 0.174 3.826 5 H 0.063 0.937 6 N -0.717 5.717 7 C -0.245 4.245 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.932 5.932 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.158 4.158 16 C 0.099 3.901 17 N -0.584 5.584 18 C 0.580 3.420 19 O -0.532 6.532 20 C 0.125 3.875 21 C -0.126 4.126 22 C -0.057 4.057 23 C -0.147 4.147 24 C 0.367 3.633 25 N -0.327 5.327 26 C 0.081 3.919 27 C -0.264 4.264 28 C 0.065 3.935 29 N -0.288 5.288 30 N -0.475 5.475 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.391 0.609 35 H 0.257 0.743 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.185 0.815 44 H 0.158 0.842 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.667 -6.583 20.896 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.093 0.907 4 C 0.062 3.938 5 H 0.081 0.919 6 N -0.361 5.361 7 C -0.376 4.376 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.199 4.199 16 C -0.024 4.024 17 N -0.315 5.315 18 C 0.365 3.635 19 O -0.409 6.409 20 C -0.014 4.014 21 C -0.147 4.147 22 C -0.083 4.083 23 C -0.170 4.170 24 C 0.138 3.862 25 N -0.105 5.105 26 C -0.060 4.060 27 C -0.292 4.292 28 C -0.123 4.123 29 N -0.107 5.107 30 N -0.191 5.191 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.229 0.771 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.174 0.826 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.202 0.798 44 H 0.176 0.824 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 11.100 -5.769 21.163 24.583 hybrid contribution 0.141 -0.505 -1.012 1.140 sum 11.241 -6.274 20.150 23.911 Atomic orbital electron populations 1.22012 0.94306 1.02550 1.02846 1.21928 0.95572 0.95844 0.84291 0.90731 1.21182 0.93196 0.92194 0.87226 0.91881 1.42673 1.05179 1.85295 1.02958 1.19191 0.92996 1.41329 0.84056 0.91108 1.24750 0.95284 1.02472 0.98138 1.69647 0.99324 1.56214 1.32732 0.86251 0.77010 0.78089 0.84709 1.21221 1.21707 1.21214 1.23626 1.01696 1.01133 0.93453 1.22719 0.93899 0.89271 0.96486 1.48415 1.48561 1.30107 1.04414 1.17338 0.81054 0.83916 0.81149 1.90787 1.38831 1.28228 1.83044 1.20977 0.94970 0.91667 0.93817 1.22161 0.99827 1.01161 0.91584 1.21556 0.93616 0.92524 1.00565 1.21804 1.00499 0.99334 0.95339 1.17696 0.91783 0.87048 0.89693 1.45764 1.38369 1.21256 1.05136 1.23071 0.97191 0.96333 0.89440 1.21713 1.08198 1.01731 0.97590 1.24169 0.97571 0.97731 0.92839 1.77422 1.14189 1.03448 1.15630 1.67101 1.10553 1.05862 1.35610 0.92452 0.92065 0.89977 0.77099 0.93323 0.90786 0.90610 0.88938 0.91932 0.82572 0.82994 0.83068 0.79794 0.82416 0.78998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 7.95 37.16 0.30 -2.68 16 2 C 0.13 2.25 3.48 -66.95 -0.23 2.02 16 3 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 4 C 0.17 3.32 3.46 -66.09 -0.23 3.10 16 5 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 6 N -0.72 -17.20 5.02 -51.65 -0.26 -17.46 16 7 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 11 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 C -0.16 -2.60 6.77 -24.58 -0.17 -2.77 16 16 C 0.10 1.39 5.85 -2.53 -0.01 1.38 16 17 N -0.58 -9.30 3.08 -164.00 -0.51 -9.81 16 18 C 0.58 9.20 7.62 -12.18 -0.09 9.11 16 19 O -0.53 -9.56 15.22 5.35 0.08 -9.48 16 20 C 0.12 1.64 6.72 -83.02 -0.56 1.08 16 21 C -0.13 -1.30 9.63 -39.04 -0.38 -1.68 16 22 C -0.06 -0.45 10.16 -39.35 -0.40 -0.85 16 23 C -0.15 -1.38 9.70 -39.14 -0.38 -1.76 16 24 C 0.37 4.27 7.55 -154.52 -1.17 3.10 16 25 N -0.33 -3.74 3.81 -12.09 -0.05 -3.79 16 26 C 0.08 0.82 11.10 -16.83 -0.19 0.64 16 27 C -0.26 -2.22 10.80 -39.99 -0.43 -2.65 16 28 C 0.07 0.54 12.02 -17.34 -0.21 0.33 16 29 N -0.29 -3.10 11.83 30.64 0.36 -2.74 16 30 N -0.48 -5.97 6.08 -8.85 -0.05 -6.02 16 31 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 32 H 0.06 1.13 6.76 -51.93 -0.35 0.78 16 33 H 0.08 1.66 6.67 -51.93 -0.35 1.31 16 34 H 0.39 9.92 4.92 -40.82 -0.20 9.72 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.24 5.03 -51.93 -0.26 0.98 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.16 1.49 7.63 -52.48 -0.40 1.08 16 41 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 42 H 0.15 1.24 7.68 -52.48 -0.40 0.84 16 43 H 0.19 1.69 7.11 -52.48 -0.37 1.32 16 44 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.19 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -32.39 372.15 -9.19 -41.58 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.68 Total: 10.71 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -4.39 Total: 1.32 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: 0.22 Total: -66.53 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.39 -9.19 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986939004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.358 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds