Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.99463 * 2 1 4 4 C 1.54321 * 109.88218 * 238.90203 * 2 1 3 5 5 H 1.08994 * 110.87120 * 144.33951 * 4 2 1 6 6 N 1.46505 * 110.71980 * 21.13762 * 4 2 1 7 7 C 1.36931 * 119.99788 * 160.02489 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99751 * 11 9 7 13 13 H 1.48490 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00028 * 11 9 7 15 15 C 1.55164 * 102.93990 * 262.77729 * 4 2 1 16 16 C 1.54904 * 101.57948 * 324.49322 * 15 4 2 17 17 N 1.47027 * 109.88251 * 121.09158 * 2 1 3 18 18 C 1.34773 * 125.64820 * 300.51595 * 17 2 1 19 19 O 1.21514 * 120.00092 * 359.97438 * 18 17 2 20 20 C 1.48171 * 119.99839 * 179.97438 * 18 17 2 21 21 C 1.39229 * 119.68377 * 179.97438 * 20 18 17 22 22 C 1.38709 * 119.18702 * 179.97438 * 21 20 18 23 23 C 1.38404 * 118.55922 * 359.97438 * 22 21 20 24 24 C 1.39261 * 119.29950 * 0.02562 * 23 22 21 25 25 N 1.39818 * 119.62198 * 180.02562 * 24 23 22 26 26 C 1.35843 * 126.10322 * 179.71826 * 25 24 23 27 27 C 1.35273 * 107.61306 * 179.87533 * 26 25 24 28 28 C 1.39958 * 107.96740 * 0.38856 * 27 26 25 29 29 N 1.30817 * 108.36979 * 359.75683 * 28 27 26 30 30 N 1.31987 * 120.76136 * 359.74385 * 24 23 22 31 31 H 1.09000 * 109.47329 * 181.10213 * 1 2 3 32 32 H 1.09006 * 109.47303 * 301.09688 * 1 2 3 33 33 H 1.08994 * 109.47338 * 61.09992 * 1 2 3 34 34 H 0.97000 * 119.99792 * 340.02283 * 6 4 2 35 35 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00882 * 82.57234 * 15 4 2 37 37 H 1.09003 * 111.00073 * 206.42275 * 15 4 2 38 38 H 1.09007 * 110.36131 * 155.84800 * 16 15 4 39 39 H 1.08996 * 110.37536 * 278.06265 * 16 15 4 40 40 H 1.08005 * 120.41010 * 359.94922 * 21 20 18 41 41 H 1.08010 * 120.72174 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.35436 * 179.97438 * 23 22 21 43 43 H 1.08006 * 126.19757 * 359.97438 * 26 25 24 44 44 H 1.08003 * 126.01571 * 180.14480 * 27 26 25 45 45 H 1.08001 * 125.81115 * 179.72599 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9650 -0.2844 -1.6210 6 7 1.0292 -0.8027 -2.2875 7 6 1.3877 -1.0418 -3.5872 8 1 2.4264 -1.1917 -3.8421 9 6 0.4153 -1.0979 -4.5763 10 7 -0.8506 -0.9158 -4.2656 11 14 0.9035 -1.4317 -6.3482 12 1 1.5801 -2.7507 -6.4351 13 1 -0.3107 -1.4404 -7.2029 14 1 1.8294 -0.3688 -6.8152 15 6 2.3518 -2.1696 -0.6922 16 6 2.8568 -1.8497 0.7368 17 7 2.0300 -0.7140 1.1840 18 6 1.7742 -0.3852 2.4657 19 8 1.0756 0.5764 2.7185 20 6 2.3449 -1.1962 3.5667 21 6 2.0768 -0.8502 4.8884 22 6 2.6159 -1.6169 5.9109 23 6 3.4046 -2.7043 5.5774 24 6 3.6327 -2.9944 4.2346 25 7 4.4280 -4.0916 3.8901 26 6 4.7307 -4.4962 2.6291 27 6 5.5223 -5.5886 2.7288 28 6 5.7037 -5.8678 4.0882 29 7 5.0498 -4.9733 4.7836 30 7 3.1023 -2.2489 3.2833 31 1 -0.3634 -1.0275 0.0198 32 1 -0.3634 0.5308 0.8800 33 1 -0.3634 0.4966 -0.8996 34 1 0.0962 -0.6685 -2.0585 35 1 -1.5301 -0.9546 -4.9568 36 1 1.4452 -2.7737 -0.6602 37 1 3.1270 -2.6620 -1.2794 38 1 2.7087 -2.7080 1.3924 39 1 3.9096 -1.5686 0.7132 40 1 1.4570 0.0048 5.1148 41 1 2.4243 -1.3708 6.9450 42 1 3.8392 -3.3208 6.3504 43 1 4.4007 -4.0292 1.7129 44 1 5.9377 -6.1492 1.9044 45 1 6.2841 -6.6832 4.4939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986939004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = 112.144400 kcal Electronic energy + Delta-G solvation = -29469.148134 eV Core-core repulsion = 25489.391486 eV Total energy + Delta-G solvation = -3979.756647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.63600 -41.73727 -40.55591 -38.87967 -36.00237 -34.72386 -34.18215 -33.12693 -32.15957 -31.35344 -30.86879 -30.27346 -26.83484 -26.31578 -25.36533 -24.99974 -23.74971 -22.40411 -21.95393 -21.15270 -20.28964 -19.44228 -19.13993 -18.61318 -17.27794 -17.15552 -16.94211 -16.73479 -16.65440 -16.28921 -15.91596 -15.54833 -15.47610 -14.86857 -14.72974 -14.60752 -14.39441 -14.28272 -13.98114 -13.68559 -13.63705 -13.31457 -13.23985 -13.04891 -12.90464 -12.83413 -12.56832 -12.12313 -12.06793 -11.88837 -11.77469 -11.58933 -11.56228 -11.34727 -11.09682 -10.92986 -10.58934 -10.23501 -9.77249 -9.35105 -9.00516 -7.92615 -5.21798 -0.63426 -0.25731 0.96603 1.01309 1.50211 1.52866 1.58693 1.62922 1.74808 1.84467 2.58296 2.66724 2.83968 3.33978 3.39713 3.52200 3.72934 3.81094 3.82357 3.87918 3.93235 4.07958 4.15698 4.19020 4.31296 4.35137 4.39484 4.52004 4.55462 4.64078 4.71855 4.82975 4.88248 4.90627 4.97146 5.05721 5.07664 5.18015 5.23108 5.24810 5.31516 5.46526 5.55418 5.60492 5.98617 6.15922 6.28597 6.40651 6.68049 6.94201 7.36179 8.08871 8.33321 9.30869 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.003013 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.582158 B = 9289.390192 C =11173.470942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.133 3.867 3 H 0.073 0.927 4 C 0.167 3.833 5 H 0.068 0.932 6 N -0.731 5.731 7 C -0.240 4.240 8 H 0.081 0.919 9 C -0.074 4.074 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.276 1.276 13 H -0.300 1.300 14 H -0.278 1.278 15 C -0.146 4.146 16 C 0.114 3.886 17 N -0.588 5.588 18 C 0.577 3.423 19 O -0.560 6.560 20 C 0.100 3.900 21 C -0.123 4.123 22 C -0.037 4.037 23 C -0.142 4.142 24 C 0.352 3.648 25 N -0.341 5.341 26 C 0.056 3.944 27 C -0.258 4.258 28 C 0.070 3.930 29 N -0.313 5.313 30 N -0.488 5.488 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.381 0.619 35 H 0.250 0.750 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.163 0.837 41 H 0.196 0.804 42 H 0.166 0.834 43 H 0.186 0.814 44 H 0.181 0.819 45 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.061 -8.049 22.736 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.091 0.909 4 C 0.057 3.943 5 H 0.086 0.914 6 N -0.374 5.374 7 C -0.372 4.372 8 H 0.099 0.901 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.202 1.202 13 H -0.227 1.227 14 H -0.204 1.204 15 C -0.187 4.187 16 C -0.008 4.008 17 N -0.319 5.319 18 C 0.365 3.635 19 O -0.439 6.439 20 C -0.038 4.038 21 C -0.145 4.145 22 C -0.062 4.062 23 C -0.164 4.164 24 C 0.122 3.878 25 N -0.120 5.120 26 C -0.084 4.084 27 C -0.286 4.286 28 C -0.118 4.118 29 N -0.131 5.131 30 N -0.204 5.204 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.217 0.783 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.180 0.820 41 H 0.213 0.787 42 H 0.183 0.817 43 H 0.203 0.797 44 H 0.199 0.801 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 13.557 -7.251 23.030 27.690 hybrid contribution -0.503 -0.111 -1.443 1.532 sum 13.054 -7.362 21.587 26.279 Atomic orbital electron populations 1.21826 0.95270 1.01418 1.01719 1.21691 0.94660 0.95909 0.84857 0.90895 1.21364 0.92143 0.94070 0.86704 0.91359 1.42837 1.05710 1.85492 1.03371 1.19617 0.93344 1.39094 0.85119 0.90069 1.25547 0.95342 1.03672 1.02090 1.69816 1.00306 1.58549 1.33461 0.85215 0.76281 0.78315 0.79952 1.20191 1.22675 1.20440 1.23438 1.01339 0.98857 0.95092 1.22697 0.94259 0.89102 0.94771 1.48436 1.48919 1.30391 1.04161 1.17810 0.80436 0.83784 0.81464 1.90757 1.40096 1.29562 1.83524 1.20618 0.96923 0.92591 0.93696 1.22333 0.99647 1.01530 0.90983 1.21979 0.91541 0.90807 1.01891 1.22089 0.99995 0.99560 0.94755 1.17983 0.92125 0.87291 0.90442 1.45899 1.38950 1.21565 1.05564 1.23344 0.98240 0.97373 0.89434 1.22077 1.07073 1.00966 0.98487 1.24845 0.96583 0.97648 0.92736 1.77389 1.15185 1.04213 1.16347 1.66875 1.11005 1.06037 1.36485 0.93575 0.92019 0.91989 0.78303 0.94097 0.92795 0.89172 0.87874 0.90194 0.81969 0.78724 0.81664 0.79651 0.80124 0.75468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 7.95 71.98 0.57 -5.06 16 2 C 0.13 4.80 3.48 45.34 0.16 4.96 16 3 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 4 C 0.17 6.42 3.46 46.18 0.16 6.58 16 5 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 6 N -0.73 -35.82 5.02 -317.32 -1.59 -37.41 16 7 C -0.24 -12.85 9.98 84.04 0.84 -12.01 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 10 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 11 Si 0.97 45.25 29.55 68.60 2.03 47.27 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 15 C -0.15 -4.76 6.77 31.99 0.22 -4.54 16 16 C 0.11 3.11 5.85 86.85 0.51 3.62 16 17 N -0.59 -18.76 3.08 -791.07 -2.44 -21.20 16 18 C 0.58 18.36 7.62 86.88 0.66 19.02 16 19 O -0.56 -20.42 15.22 -3.76 -0.06 -20.48 16 20 C 0.10 2.54 6.72 41.88 0.28 2.82 16 21 C -0.12 -2.33 9.63 22.62 0.22 -2.12 16 22 C -0.04 -0.47 10.16 22.42 0.23 -0.24 16 23 C -0.14 -2.31 9.70 22.56 0.22 -2.09 16 24 C 0.35 7.66 7.55 132.94 1.00 8.66 16 25 N -0.34 -7.28 3.81 -192.18 -0.73 -8.01 16 26 C 0.06 1.07 11.10 83.39 0.93 1.99 16 27 C -0.26 -3.70 10.80 22.00 0.24 -3.47 16 28 C 0.07 0.96 12.02 85.26 1.02 1.99 16 29 N -0.31 -6.07 11.83 -56.98 -0.67 -6.75 16 30 N -0.49 -11.77 6.08 -181.90 -1.11 -12.87 16 31 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 32 H 0.06 2.37 6.76 -2.38 -0.02 2.35 16 33 H 0.06 2.66 6.67 -2.39 -0.02 2.64 16 34 H 0.38 20.11 4.92 -92.71 -0.46 19.65 16 35 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.09 2.66 8.14 -2.39 -0.02 2.65 16 38 H 0.10 2.68 5.03 -2.38 -0.01 2.67 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.16 2.84 7.63 -2.91 -0.02 2.82 16 41 H 0.20 0.77 8.06 -2.91 -0.02 0.74 16 42 H 0.17 2.22 7.68 -2.91 -0.02 2.20 16 43 H 0.19 3.22 7.11 -2.91 -0.02 3.20 16 44 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.23 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -71.81 372.15 4.00 -67.80 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.57 Total: 33.80 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 7.72 Total: 16.41 kcal Atomic # 7 Polarization: -138.55 SS G_CDS: -6.26 Total: -144.81 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.06 Total: -20.48 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.81 4.00 -67.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986939004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.947 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds