Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.99626 * 2 1 4 4 C 1.54321 * 109.88290 * 121.09748 * 2 1 3 5 5 H 1.08994 * 110.87120 * 23.17414 * 4 2 1 6 6 N 1.46505 * 110.71980 * 259.97225 * 4 2 1 7 7 C 1.36931 * 119.99788 * 160.02489 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48508 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 119.99997 * 11 9 7 14 14 H 1.48498 * 109.47018 * 240.00044 * 11 9 7 15 15 C 1.55164 * 102.93990 * 141.61192 * 4 2 1 16 16 C 1.54904 * 101.57948 * 324.49322 * 15 4 2 17 17 N 1.47027 * 109.88053 * 238.90717 * 2 1 3 18 18 C 1.34773 * 125.64820 * 61.68001 * 17 2 1 19 19 O 1.21514 * 120.00092 * 359.97438 * 18 17 2 20 20 C 1.48184 * 119.99902 * 179.97438 * 18 17 2 21 21 C 1.39121 * 119.69182 * 179.97438 * 20 18 17 22 22 C 1.39288 * 118.97589 * 180.02562 * 21 20 18 23 23 N 1.39934 * 120.82853 * 179.97438 * 22 21 20 24 24 C 1.35816 * 126.10454 * 179.71546 * 23 22 21 25 25 C 1.35295 * 107.61503 * 179.83757 * 24 23 22 26 26 C 1.39940 * 107.96808 * 0.42364 * 25 24 23 27 27 N 1.30819 * 108.36652 * 359.73351 * 26 25 24 28 28 C 1.39288 * 118.35184 * 359.97438 * 22 21 20 29 29 C 1.38344 * 119.27550 * 0.02562 * 28 22 21 30 30 N 1.31595 * 120.97986 * 359.72592 * 29 28 22 31 31 H 1.09000 * 109.47085 * 298.90316 * 1 2 3 32 32 H 1.08996 * 109.47173 * 58.89968 * 1 2 3 33 33 H 1.08994 * 109.46996 * 178.90294 * 1 2 3 34 34 H 0.97000 * 119.99792 * 340.02283 * 6 4 2 35 35 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00882 * 82.57234 * 15 4 2 37 37 H 1.09003 * 111.00073 * 206.42275 * 15 4 2 38 38 H 1.09007 * 110.36131 * 155.84800 * 16 15 4 39 39 H 1.08992 * 110.37206 * 278.17145 * 16 15 4 40 40 H 1.08001 * 120.51468 * 359.97438 * 21 20 18 41 41 H 1.07995 * 126.19582 * 359.97438 * 24 23 22 42 42 H 1.08003 * 126.01446 * 180.15819 * 25 24 23 43 43 H 1.08001 * 125.81906 * 179.77961 * 26 25 24 44 44 H 1.08000 * 120.36402 * 179.97438 * 28 22 21 45 45 H 1.08001 * 119.50762 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 1.3065 -1.4458 1.6210 6 7 2.4555 0.1961 2.2875 7 6 2.5576 -0.2226 3.5872 8 1 2.3431 -1.2500 3.8421 9 6 2.9428 0.6720 4.5763 10 7 3.2046 1.9238 4.2657 11 14 3.0895 0.0990 6.3482 12 1 2.7426 -1.3426 6.4326 13 1 4.4827 0.3019 6.8203 14 1 2.1591 0.8822 7.2004 15 6 3.2877 -1.5142 0.6922 16 6 2.8145 -1.8794 -0.7368 17 7 2.0300 -0.7140 -1.1840 18 6 1.8085 -0.3611 -2.4657 19 8 1.1439 0.6242 -2.7185 20 6 2.3755 -1.1748 -3.5668 21 6 2.1425 -0.8050 -4.8875 22 6 2.6821 -1.5808 -5.9108 23 7 2.4716 -1.2448 -7.2527 24 6 2.9493 -1.9185 -8.3309 25 6 2.5194 -1.2739 -9.4400 26 6 1.7648 -0.1684 -9.0316 27 7 1.7353 -0.1498 -7.7238 28 6 3.4365 -2.6995 -5.5651 29 6 3.6240 -3.0023 -4.2283 30 7 3.1054 -2.2473 -3.2835 31 1 -0.3633 0.4967 0.8997 32 1 -0.3633 0.5308 -0.8799 33 1 -0.3633 -1.0274 -0.0197 34 1 2.6485 1.1187 2.0585 35 1 3.4734 2.5490 4.9569 36 1 4.1655 -0.8689 0.6602 37 1 3.4853 -2.4110 1.2795 38 1 3.6717 -2.0337 -1.3924 39 1 2.1887 -2.7714 -0.7129 40 1 1.5515 0.0697 -5.1160 41 1 3.5598 -2.8091 -8.3073 42 1 2.7261 -1.5596 -10.4608 43 1 1.2873 0.5471 -9.6847 44 1 3.8698 -3.3241 -6.3323 45 1 4.2080 -3.8691 -3.9560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986939783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = 120.326915 kcal Electronic energy + Delta-G solvation = -28682.904443 eV Core-core repulsion = 24703.502617 eV Total energy + Delta-G solvation = -3979.401827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.04170 -40.75972 -39.36481 -37.36905 -34.91304 -34.03701 -32.17654 -31.50237 -30.89819 -30.63277 -30.19388 -29.02660 -25.30595 -25.11631 -24.42163 -23.02623 -22.72264 -21.57007 -21.25770 -20.21680 -19.51334 -18.28513 -17.35561 -17.04762 -16.36338 -16.20284 -15.92399 -15.73711 -15.39528 -14.98227 -14.71137 -14.48533 -14.19565 -14.02908 -13.62638 -13.56788 -13.29663 -13.24067 -12.95268 -12.73097 -12.36657 -12.10034 -11.82976 -11.58178 -11.37809 -11.26072 -11.13322 -11.00532 -10.84202 -10.52209 -10.34355 -10.15380 -9.89950 -9.78629 -9.69307 -9.66171 -9.56225 -8.91769 -8.88719 -8.34582 -6.99633 -5.79366 -3.09376 0.10537 0.45503 1.65073 1.76060 2.28793 2.69143 2.97672 3.42268 3.47814 3.50241 3.60447 3.84736 3.90101 4.10138 4.37155 4.40518 4.56894 4.61455 4.70345 4.95616 5.08169 5.12753 5.18979 5.24572 5.37680 5.41442 5.45791 5.54263 5.66086 5.67982 5.79186 5.89257 5.94176 6.07765 6.12782 6.13945 6.27755 6.43500 6.51238 6.53195 6.64541 6.68271 6.75083 6.99179 7.08388 7.36189 7.68505 7.73100 8.23851 8.38078 9.49518 10.04558 10.39406 11.42972 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.002119 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.550563 B =13212.072139 C =13747.361621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.080 0.920 4 C 0.176 3.824 5 H 0.065 0.935 6 N -0.716 5.716 7 C -0.240 4.240 8 H 0.073 0.927 9 C -0.012 4.012 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.159 4.159 16 C 0.102 3.898 17 N -0.584 5.584 18 C 0.577 3.423 19 O -0.533 6.533 20 C 0.120 3.880 21 C -0.118 4.118 22 C 0.202 3.798 23 N -0.331 5.331 24 C 0.054 3.946 25 C -0.254 4.254 26 C 0.060 3.940 27 N -0.279 5.279 28 C -0.183 4.183 29 C 0.126 3.874 30 N -0.457 5.457 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.162 0.838 41 H 0.181 0.819 42 H 0.158 0.842 43 H 0.193 0.807 44 H 0.145 0.855 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 -12.667 -27.638 30.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.083 0.917 6 N -0.356 5.356 7 C -0.371 4.371 8 H 0.091 0.909 9 C -0.208 4.208 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.201 4.201 16 C -0.021 4.021 17 N -0.315 5.315 18 C 0.363 3.637 19 O -0.410 6.410 20 C -0.019 4.019 21 C -0.141 4.141 22 C 0.100 3.900 23 N -0.107 5.107 24 C -0.087 4.087 25 C -0.283 4.283 26 C -0.128 4.128 27 N -0.097 5.097 28 C -0.206 4.206 29 C -0.033 4.033 30 N -0.170 5.170 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.179 0.821 41 H 0.198 0.802 42 H 0.175 0.825 43 H 0.210 0.790 44 H 0.163 0.837 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.241 -11.786 -25.650 28.229 hybrid contribution 0.499 -0.286 -0.886 1.056 sum 0.740 -12.072 -26.536 29.162 Atomic orbital electron populations 1.22050 0.94718 1.01695 1.02817 1.21994 0.94539 0.96990 0.84265 0.90188 1.21256 0.93760 0.91567 0.86960 0.91728 1.42358 1.80987 1.09131 1.03139 1.19247 1.38844 0.95192 0.83846 0.90925 1.24771 1.02217 0.95686 0.98163 1.69677 1.52634 1.03044 1.32435 0.86108 0.77245 0.77686 0.85061 1.20498 1.21886 1.21867 1.23622 1.01083 1.01583 0.93773 1.22714 0.95937 0.87117 0.96349 1.48379 1.50406 1.28477 1.04228 1.17335 0.81050 0.84097 0.81257 1.90795 1.40332 1.26786 1.83085 1.21161 0.95355 0.93000 0.92358 1.21809 1.00339 1.01283 0.90649 1.17643 0.96679 0.94808 0.80821 1.45967 1.39997 1.21308 1.03440 1.22825 1.00365 0.99386 0.86140 1.21689 1.07496 0.99494 0.99587 1.24215 0.98124 0.98359 0.92139 1.77600 1.15041 1.04483 1.12566 1.22012 1.01764 0.97355 0.99493 1.22803 0.95610 0.97799 0.87078 1.67996 1.07868 1.04360 1.36755 0.90954 0.91976 0.93020 0.78022 0.93466 0.90829 0.90657 0.88351 0.91905 0.82056 0.80173 0.82461 0.78981 0.83682 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.10 37.16 0.34 -2.33 16 2 C 0.13 2.31 3.21 -66.95 -0.21 2.09 16 3 H 0.08 1.64 7.69 -51.93 -0.40 1.24 16 4 C 0.18 3.45 3.11 -66.09 -0.21 3.25 16 5 H 0.06 1.27 7.84 -51.93 -0.41 0.86 16 6 N -0.72 -17.58 5.25 -51.65 -0.27 -17.85 16 7 C -0.24 -6.49 9.98 -15.06 -0.15 -6.64 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 10 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 11 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 C -0.16 -2.72 6.77 -24.58 -0.17 -2.89 16 16 C 0.10 1.48 5.94 -2.53 -0.02 1.46 16 17 N -0.58 -9.73 3.06 -163.99 -0.50 -10.24 16 18 C 0.58 9.79 7.63 -12.18 -0.09 9.70 16 19 O -0.53 -10.44 15.37 5.35 0.08 -10.36 16 20 C 0.12 1.66 6.72 -83.04 -0.56 1.10 16 21 C -0.12 -1.53 9.26 -38.86 -0.36 -1.89 16 22 C 0.20 2.09 6.73 -83.38 -0.56 1.53 16 23 N -0.33 -3.32 3.81 -10.41 -0.04 -3.36 16 24 C 0.05 0.36 10.86 -16.84 -0.18 0.17 16 25 C -0.25 -1.56 10.80 -39.99 -0.43 -1.99 16 26 C 0.06 0.47 12.02 -17.35 -0.21 0.26 16 27 N -0.28 -3.17 11.97 30.64 0.37 -2.80 16 28 C -0.18 -1.31 9.54 -39.15 -0.37 -1.68 16 29 C 0.13 0.99 11.17 -17.61 -0.20 0.79 16 30 N -0.46 -5.28 6.59 -9.86 -0.06 -5.35 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.10 6.90 -51.93 -0.36 0.74 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.39 10.23 7.51 -40.82 -0.31 9.92 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.10 1.33 5.87 -51.93 -0.30 1.03 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.16 2.34 7.38 -52.49 -0.39 1.96 16 41 H 0.18 0.49 7.13 -52.49 -0.37 0.12 16 42 H 0.16 0.51 8.06 -52.48 -0.42 0.09 16 43 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.15 0.50 6.88 -52.49 -0.36 0.14 16 45 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 376.53 15.07 5.67 5.67 Total: -1.00 -34.43 376.53 -8.36 -42.78 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.83 Total: 9.09 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -3.48 Total: 2.49 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: 0.21 Total: -66.75 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.43 -8.36 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986939783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.108 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds