Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.99626 * 2 1 4 4 C 1.54321 * 109.88290 * 121.09748 * 2 1 3 5 5 H 1.08994 * 110.87120 * 23.17414 * 4 2 1 6 6 N 1.46505 * 110.71980 * 259.97225 * 4 2 1 7 7 C 1.36931 * 119.99788 * 160.02489 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48508 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 119.99997 * 11 9 7 14 14 H 1.48498 * 109.47018 * 240.00044 * 11 9 7 15 15 C 1.55164 * 102.93990 * 141.61192 * 4 2 1 16 16 C 1.54904 * 101.57948 * 324.49322 * 15 4 2 17 17 N 1.47027 * 109.88053 * 238.90717 * 2 1 3 18 18 C 1.34773 * 125.64820 * 61.68001 * 17 2 1 19 19 O 1.21514 * 120.00092 * 359.97438 * 18 17 2 20 20 C 1.48184 * 119.99902 * 179.97438 * 18 17 2 21 21 C 1.39121 * 119.69182 * 179.97438 * 20 18 17 22 22 C 1.39288 * 118.97589 * 180.02562 * 21 20 18 23 23 N 1.39934 * 120.82853 * 179.97438 * 22 21 20 24 24 C 1.35816 * 126.10454 * 179.71546 * 23 22 21 25 25 C 1.35295 * 107.61503 * 179.83757 * 24 23 22 26 26 C 1.39940 * 107.96808 * 0.42364 * 25 24 23 27 27 N 1.30819 * 108.36652 * 359.73351 * 26 25 24 28 28 C 1.39288 * 118.35184 * 359.97438 * 22 21 20 29 29 C 1.38344 * 119.27550 * 0.02562 * 28 22 21 30 30 N 1.31595 * 120.97986 * 359.72592 * 29 28 22 31 31 H 1.09000 * 109.47085 * 298.90316 * 1 2 3 32 32 H 1.08996 * 109.47173 * 58.89968 * 1 2 3 33 33 H 1.08994 * 109.46996 * 178.90294 * 1 2 3 34 34 H 0.97000 * 119.99792 * 340.02283 * 6 4 2 35 35 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00882 * 82.57234 * 15 4 2 37 37 H 1.09003 * 111.00073 * 206.42275 * 15 4 2 38 38 H 1.09007 * 110.36131 * 155.84800 * 16 15 4 39 39 H 1.08992 * 110.37206 * 278.17145 * 16 15 4 40 40 H 1.08001 * 120.51468 * 359.97438 * 21 20 18 41 41 H 1.07995 * 126.19582 * 359.97438 * 24 23 22 42 42 H 1.08003 * 126.01446 * 180.15819 * 25 24 23 43 43 H 1.08001 * 125.81906 * 179.77961 * 26 25 24 44 44 H 1.08000 * 120.36402 * 179.97438 * 28 22 21 45 45 H 1.08001 * 119.50762 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 1.3065 -1.4458 1.6210 6 7 2.4555 0.1961 2.2875 7 6 2.5576 -0.2226 3.5872 8 1 2.3431 -1.2500 3.8421 9 6 2.9428 0.6720 4.5763 10 7 3.2046 1.9238 4.2657 11 14 3.0895 0.0990 6.3482 12 1 2.7426 -1.3426 6.4326 13 1 4.4827 0.3019 6.8203 14 1 2.1591 0.8822 7.2004 15 6 3.2877 -1.5142 0.6922 16 6 2.8145 -1.8794 -0.7368 17 7 2.0300 -0.7140 -1.1840 18 6 1.8085 -0.3611 -2.4657 19 8 1.1439 0.6242 -2.7185 20 6 2.3755 -1.1748 -3.5668 21 6 2.1425 -0.8050 -4.8875 22 6 2.6821 -1.5808 -5.9108 23 7 2.4716 -1.2448 -7.2527 24 6 2.9493 -1.9185 -8.3309 25 6 2.5194 -1.2739 -9.4400 26 6 1.7648 -0.1684 -9.0316 27 7 1.7353 -0.1498 -7.7238 28 6 3.4365 -2.6995 -5.5651 29 6 3.6240 -3.0023 -4.2283 30 7 3.1054 -2.2473 -3.2835 31 1 -0.3633 0.4967 0.8997 32 1 -0.3633 0.5308 -0.8799 33 1 -0.3633 -1.0274 -0.0197 34 1 2.6485 1.1187 2.0585 35 1 3.4734 2.5490 4.9569 36 1 4.1655 -0.8689 0.6602 37 1 3.4853 -2.4110 1.2795 38 1 3.6717 -2.0337 -1.3924 39 1 2.1887 -2.7714 -0.7129 40 1 1.5515 0.0697 -5.1160 41 1 3.5598 -2.8091 -8.3073 42 1 2.7261 -1.5596 -10.4608 43 1 1.2873 0.5471 -9.6847 44 1 3.8698 -3.3241 -6.3323 45 1 4.2080 -3.8691 -3.9560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986939783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = 97.429431 kcal Electronic energy + Delta-G solvation = -28683.897353 eV Core-core repulsion = 24703.502617 eV Total energy + Delta-G solvation = -3980.394736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.65988 -41.75047 -40.48119 -38.80881 -36.02642 -35.47972 -33.48394 -32.77430 -32.21012 -31.47624 -30.84124 -30.61218 -26.87252 -26.21563 -25.23341 -24.68481 -23.80201 -22.49096 -21.89135 -21.54329 -20.63554 -19.31681 -19.02437 -18.24635 -17.47050 -17.08268 -16.88438 -16.64574 -16.44902 -16.31655 -15.88806 -15.53958 -15.41938 -15.11172 -14.82469 -14.70677 -14.52692 -14.41517 -14.12525 -13.72024 -13.63637 -13.30481 -13.17699 -13.11660 -12.93087 -12.66473 -12.56273 -12.14689 -12.09657 -12.02873 -11.83557 -11.71766 -11.62523 -11.32053 -10.97123 -10.51116 -10.48690 -10.37032 -9.69570 -9.50908 -9.01591 -7.93142 -5.23274 -0.65490 -0.30732 1.03428 1.17428 1.49727 1.50685 1.60709 1.63005 1.75272 1.80606 2.57694 2.69731 2.91654 3.23548 3.39291 3.52764 3.63250 3.75131 3.78093 3.88135 3.95145 4.02434 4.08051 4.18252 4.34687 4.37569 4.43823 4.53443 4.55566 4.58826 4.65812 4.69699 4.84456 4.87169 5.01104 5.01266 5.07143 5.19853 5.24171 5.26042 5.43382 5.48802 5.56388 5.58414 5.99499 6.26736 6.40286 6.52143 6.58626 6.96179 7.33181 8.04619 8.29257 9.30702 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.002119 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.550563 B =13212.072139 C =13747.361621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.130 3.870 3 H 0.048 0.952 4 C 0.172 3.828 5 H 0.072 0.928 6 N -0.729 5.729 7 C -0.233 4.233 8 H 0.085 0.915 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.975 3.025 12 H -0.260 1.260 13 H -0.296 1.296 14 H -0.298 1.298 15 C -0.150 4.150 16 C 0.114 3.886 17 N -0.586 5.586 18 C 0.571 3.429 19 O -0.575 6.575 20 C 0.100 3.900 21 C -0.137 4.137 22 C 0.194 3.806 23 N -0.348 5.348 24 C 0.055 3.945 25 C -0.255 4.255 26 C 0.058 3.942 27 N -0.345 5.345 28 C -0.154 4.154 29 C 0.134 3.866 30 N -0.471 5.471 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.370 0.630 35 H 0.249 0.751 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.129 0.871 41 H 0.226 0.774 42 H 0.189 0.811 43 H 0.215 0.785 44 H 0.196 0.804 45 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 -17.295 -29.882 34.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.066 0.934 4 C 0.063 3.937 5 H 0.090 0.910 6 N -0.369 5.369 7 C -0.365 4.365 8 H 0.103 0.897 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.804 3.196 12 H -0.184 1.184 13 H -0.223 1.223 14 H -0.225 1.225 15 C -0.190 4.190 16 C -0.008 4.008 17 N -0.317 5.317 18 C 0.359 3.641 19 O -0.455 6.455 20 C -0.037 4.037 21 C -0.161 4.161 22 C 0.092 3.908 23 N -0.125 5.125 24 C -0.084 4.084 25 C -0.283 4.283 26 C -0.130 4.130 27 N -0.163 5.163 28 C -0.176 4.176 29 C -0.025 4.025 30 N -0.184 5.184 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.202 0.798 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.147 0.853 41 H 0.242 0.758 42 H 0.207 0.793 43 H 0.232 0.768 44 H 0.213 0.787 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.783 -16.479 -27.938 32.485 hybrid contribution 0.031 1.078 -0.453 1.170 sum 1.814 -15.401 -28.391 32.350 Atomic orbital electron populations 1.21937 0.93949 1.02487 1.01842 1.21737 0.95108 0.95550 0.85046 0.93383 1.21426 0.95112 0.91020 0.86178 0.90985 1.42532 1.81327 1.09275 1.03724 1.19666 1.36579 0.95470 0.84736 0.89708 1.25613 1.03272 0.95901 1.02318 1.69851 1.54840 1.04334 1.33302 0.85042 0.76498 0.78035 0.79985 1.18423 1.22338 1.22536 1.23458 0.98763 1.01242 0.95572 1.22783 0.96627 0.86737 0.94604 1.48418 1.50651 1.28883 1.03751 1.17940 0.80373 0.83931 0.81886 1.90755 1.42191 1.28731 1.83781 1.20507 0.97772 0.94411 0.91010 1.21563 1.01544 1.01421 0.91554 1.17876 0.96843 0.95370 0.80700 1.46084 1.40810 1.21758 1.03832 1.23661 0.99729 1.00051 0.84970 1.22150 1.06542 0.98494 1.01115 1.24815 0.97534 0.99183 0.91493 1.77579 1.17575 1.06635 1.14501 1.22553 0.98922 0.95582 1.00551 1.23644 0.94298 0.97810 0.86751 1.67874 1.08126 1.03981 1.38405 0.91781 0.93030 0.91232 0.79786 0.94170 0.92850 0.89026 0.86623 0.89703 0.85336 0.75794 0.79338 0.76817 0.78677 0.76121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.10 71.98 0.65 -4.52 16 2 C 0.13 4.99 3.21 45.34 0.15 5.13 16 3 H 0.05 2.14 7.69 -2.39 -0.02 2.12 16 4 C 0.17 6.80 3.11 46.18 0.14 6.94 16 5 H 0.07 2.76 7.84 -2.39 -0.02 2.74 16 6 N -0.73 -36.79 5.25 -317.32 -1.67 -38.45 16 7 C -0.23 -12.63 9.98 84.04 0.84 -11.79 16 8 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 9 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 10 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 11 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 12 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 13 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 15 C -0.15 -4.96 6.77 31.99 0.22 -4.75 16 16 C 0.11 3.14 5.94 86.85 0.52 3.66 16 17 N -0.59 -19.94 3.06 -791.05 -2.42 -22.36 16 18 C 0.57 20.36 7.63 86.89 0.66 21.03 16 19 O -0.57 -24.52 15.37 -3.76 -0.06 -24.58 16 20 C 0.10 2.79 6.72 41.86 0.28 3.07 16 21 C -0.14 -3.73 9.26 22.73 0.21 -3.52 16 22 C 0.19 3.72 6.73 38.35 0.26 3.98 16 23 N -0.35 -6.48 3.81 -186.86 -0.71 -7.19 16 24 C 0.05 0.53 10.86 83.40 0.91 1.43 16 25 C -0.26 -2.36 10.80 22.00 0.24 -2.12 16 26 C 0.06 0.84 12.02 85.26 1.02 1.87 16 27 N -0.34 -8.00 11.97 -56.99 -0.68 -8.68 16 28 C -0.15 -1.47 9.54 22.55 0.21 -1.26 16 29 C 0.13 1.46 11.17 84.75 0.95 2.40 16 30 N -0.47 -9.75 6.59 -185.12 -1.22 -10.97 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.05 1.95 6.90 -2.39 -0.02 1.93 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.37 20.70 7.51 -92.71 -0.70 20.01 16 35 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.12 2.85 5.87 -2.38 -0.01 2.84 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.13 4.25 7.38 -2.91 -0.02 4.23 16 41 H 0.23 -0.19 7.13 -2.91 -0.02 -0.22 16 42 H 0.19 0.42 8.06 -2.91 -0.02 0.40 16 43 H 0.22 1.71 8.06 -2.91 -0.02 1.68 16 44 H 0.20 -0.13 6.88 -2.91 -0.02 -0.15 16 45 H 0.22 0.26 8.06 -2.91 -0.02 0.24 16 Total: -1.00 -82.14 376.53 3.61 -78.54 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.33 Total: 28.28 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 7.72 Total: 17.50 kcal Atomic # 7 Polarization: -141.20 SS G_CDS: -6.42 Total: -147.62 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.06 Total: -24.58 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -82.14 3.61 -78.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986939783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.966 kcal (2) G-P(sol) polarization free energy of solvation -82.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds