Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.87583 * 2 1 4 4 C 1.54327 * 110.01113 * 121.10135 * 2 1 3 5 5 H 1.08999 * 110.71962 * 215.66018 * 4 2 1 6 6 N 1.46501 * 110.71932 * 338.93069 * 4 2 1 7 7 C 1.36941 * 120.00084 * 205.00312 * 6 4 2 8 8 H 1.07997 * 119.99754 * 359.97438 * 7 6 4 9 9 C 1.38808 * 119.99662 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00527 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99681 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46898 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47318 * 119.99461 * 11 9 7 14 14 H 1.48502 * 109.47227 * 239.99993 * 11 9 7 15 15 C 1.55154 * 102.94403 * 97.29408 * 4 2 1 16 16 C 1.54913 * 101.58067 * 35.49922 * 15 4 2 17 17 N 1.47022 * 109.87895 * 238.98473 * 2 1 3 18 18 C 1.34778 * 125.65004 * 59.40674 * 17 2 1 19 19 O 1.21515 * 119.99859 * 359.97438 * 18 17 2 20 20 C 1.48178 * 119.99992 * 179.97438 * 18 17 2 21 21 C 1.39125 * 119.69555 * 179.72898 * 20 18 17 22 22 C 1.39283 * 118.97821 * 179.73643 * 21 20 18 23 23 N 1.39936 * 120.82252 * 180.26289 * 22 21 20 24 24 C 1.35831 * 126.10097 * 184.98434 * 23 22 21 25 25 C 1.35284 * 107.61473 * 179.87219 * 24 23 22 26 26 C 1.39945 * 107.96966 * 0.38923 * 25 24 23 27 27 N 1.30825 * 108.36715 * 359.75722 * 26 25 24 28 28 C 1.39280 * 118.35170 * 0.52305 * 22 21 20 29 29 C 1.38342 * 119.27992 * 359.73455 * 28 22 21 30 30 N 1.31597 * 120.97175 * 359.97438 * 29 28 22 31 31 H 1.08991 * 109.47360 * 179.29923 * 1 2 3 32 32 H 1.09006 * 109.46753 * 299.30009 * 1 2 3 33 33 H 1.09004 * 109.46911 * 59.29657 * 1 2 3 34 34 H 0.97001 * 120.00107 * 25.00112 * 6 4 2 35 35 H 0.97002 * 120.00276 * 180.02562 * 10 9 7 36 36 H 1.09001 * 111.00629 * 277.43051 * 15 4 2 37 37 H 1.08993 * 111.00541 * 153.57905 * 15 4 2 38 38 H 1.08998 * 110.36898 * 204.14917 * 16 15 4 39 39 H 1.09001 * 110.45585 * 81.87477 * 16 15 4 40 40 H 1.08007 * 120.50994 * 359.97438 * 21 20 18 41 41 H 1.07999 * 126.18662 * 359.97438 * 24 23 22 42 42 H 1.08002 * 126.01333 * 180.18007 * 25 24 23 43 43 H 1.08001 * 125.81737 * 179.75073 * 26 25 24 44 44 H 1.08008 * 120.35988 * 179.75429 * 28 22 21 45 45 H 1.08001 * 119.51255 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7491 1.2417 5 1 2.9684 -0.2809 1.6162 6 7 1.0341 -0.8048 2.2878 7 6 1.4022 -0.9408 3.5998 8 1 2.4474 -1.0073 3.8632 9 6 0.4318 -0.9942 4.5908 10 7 -0.8421 -0.9137 4.2697 11 14 0.9338 -1.1804 6.3805 12 1 2.4144 -1.2488 6.4747 13 1 0.4414 -0.0142 7.1567 14 1 0.3451 -2.4269 6.9327 15 6 2.3575 -2.1681 0.6903 16 6 2.8598 -1.8466 -0.7395 17 7 2.0300 -0.7124 -1.1849 18 6 1.7729 -0.3827 -2.4662 19 8 1.0723 0.5777 -2.7176 20 6 2.3446 -1.1916 -3.5684 21 6 2.0705 -0.8489 -4.8886 22 6 2.6202 -1.6162 -5.9129 23 7 2.3743 -1.3030 -7.2544 24 6 2.7738 -2.0275 -8.3317 25 6 2.3348 -1.3886 -9.4404 26 6 1.6545 -0.2354 -9.0333 27 7 1.6774 -0.1830 -7.7263 28 6 3.4161 -2.7061 -5.5688 29 6 3.6382 -2.9866 -4.2324 30 7 3.1097 -2.2395 -3.2867 31 1 -0.3633 -1.0275 -0.0126 32 1 -0.3633 0.5030 0.8963 33 1 -0.3633 0.5247 -0.8836 34 1 0.0952 -0.7454 2.0511 35 1 -1.5202 -0.9506 4.9624 36 1 1.4521 -2.7742 0.6591 37 1 3.1344 -2.6591 1.2762 38 1 2.7128 -2.7048 -1.3952 39 1 3.9117 -1.5618 -0.7186 40 1 1.4443 0.0013 -5.1158 41 1 3.3382 -2.9480 -8.3073 42 1 2.4860 -1.7101 -10.4603 43 1 1.1898 0.4881 -9.6868 44 1 3.8553 -3.3255 -6.3369 45 1 4.2544 -3.8311 -3.9613 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986939784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = 104.237408 kcal Electronic energy + Delta-G solvation = -28783.342799 eV Core-core repulsion = 24803.243279 eV Total energy + Delta-G solvation = -3980.099520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.65636 -41.76195 -40.51853 -38.86132 -36.05331 -35.45701 -33.53120 -32.72786 -32.08911 -31.49118 -30.83468 -30.47397 -26.79438 -26.33325 -25.38076 -24.90164 -23.82542 -22.56044 -21.87097 -21.18450 -20.30384 -19.47660 -19.19558 -18.26712 -17.24244 -17.08763 -16.91357 -16.72883 -16.51208 -16.28186 -16.01949 -15.62884 -15.47175 -15.11224 -14.77371 -14.73616 -14.53748 -14.34573 -13.91952 -13.73150 -13.65171 -13.25324 -13.15774 -13.05942 -12.90018 -12.86748 -12.56815 -12.11021 -12.02884 -12.00968 -11.83262 -11.67051 -11.56898 -11.26787 -10.95546 -10.52156 -10.47954 -10.36866 -9.68926 -9.50867 -9.00058 -7.92655 -5.21862 -0.64999 -0.30350 1.03465 1.17744 1.49990 1.50757 1.60731 1.63536 1.76695 1.80749 2.58164 2.70074 2.92387 3.24204 3.39242 3.53156 3.65712 3.77345 3.80199 3.88522 3.93717 4.01894 4.06090 4.20511 4.35454 4.39940 4.43603 4.53434 4.56822 4.60760 4.65693 4.69868 4.85401 4.88501 4.94766 5.01422 5.10947 5.18992 5.25777 5.28417 5.43567 5.51194 5.56537 5.58620 5.99698 6.28569 6.41176 6.52340 6.59126 6.97167 7.35815 8.08675 8.33087 9.31221 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.002123 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.497652 B =13186.992544 C =13813.060883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.130 3.870 3 H 0.067 0.933 4 C 0.167 3.833 5 H 0.072 0.928 6 N -0.731 5.731 7 C -0.236 4.236 8 H 0.083 0.917 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.262 1.262 13 H -0.298 1.298 14 H -0.296 1.296 15 C -0.147 4.147 16 C 0.113 3.887 17 N -0.586 5.586 18 C 0.571 3.429 19 O -0.574 6.574 20 C 0.099 3.901 21 C -0.137 4.137 22 C 0.193 3.807 23 N -0.348 5.348 24 C 0.055 3.945 25 C -0.256 4.256 26 C 0.057 3.943 27 N -0.344 5.344 28 C -0.153 4.153 29 C 0.134 3.866 30 N -0.471 5.471 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.380 0.620 35 H 0.250 0.750 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.225 0.775 42 H 0.189 0.811 43 H 0.215 0.785 44 H 0.196 0.804 45 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.303 -8.870 -29.974 34.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.086 0.914 4 C 0.057 3.943 5 H 0.090 0.910 6 N -0.373 5.373 7 C -0.368 4.368 8 H 0.101 0.899 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.804 3.196 12 H -0.186 1.186 13 H -0.226 1.226 14 H -0.223 1.223 15 C -0.188 4.188 16 C -0.008 4.008 17 N -0.317 5.317 18 C 0.359 3.641 19 O -0.454 6.454 20 C -0.037 4.037 21 C -0.161 4.161 22 C 0.092 3.908 23 N -0.125 5.125 24 C -0.084 4.084 25 C -0.283 4.283 26 C -0.130 4.130 27 N -0.163 5.163 28 C -0.176 4.176 29 C -0.025 4.025 30 N -0.184 5.184 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.216 0.784 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.147 0.853 41 H 0.242 0.758 42 H 0.206 0.794 43 H 0.232 0.768 44 H 0.213 0.787 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 13.831 -7.883 -28.026 32.232 hybrid contribution -0.930 0.381 -0.409 1.085 sum 12.901 -7.502 -28.436 32.114 Atomic orbital electron populations 1.21816 0.95549 1.01392 1.01439 1.21750 0.94521 0.95926 0.85247 0.91445 1.21380 0.92099 0.94330 0.86449 0.90991 1.42829 1.04970 1.87281 1.02209 1.19717 0.92950 1.39946 0.84152 0.89897 1.25581 0.95327 1.03928 1.02190 1.69836 0.99932 1.59502 1.32975 0.85052 0.77998 0.76370 0.80188 1.18591 1.22573 1.22315 1.23438 1.01402 0.98452 0.95462 1.22772 0.94180 0.89176 0.94684 1.48432 1.48789 1.30716 1.03742 1.17929 0.80501 0.83792 0.81868 1.90754 1.40522 1.30266 1.83815 1.20518 0.97539 0.94619 0.91039 1.21570 1.01410 1.01528 0.91553 1.17871 0.96545 0.95693 0.80704 1.46087 1.43230 1.19302 1.03881 1.23661 1.00091 0.99665 0.85004 1.22146 1.07425 0.97611 1.01126 1.24816 0.97503 0.99207 0.91512 1.77579 1.18082 1.06129 1.14469 1.22553 0.98361 0.96125 1.00566 1.23641 0.94554 0.97593 0.86739 1.67872 1.08150 1.03960 1.38379 0.93386 0.92013 0.92664 0.78449 0.94149 0.92761 0.89070 0.86650 0.89753 0.85327 0.75821 0.79351 0.76817 0.78710 0.76141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 7.93 71.98 0.57 -5.41 16 2 C 0.13 4.97 3.47 45.34 0.16 5.13 16 3 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 4 C 0.17 6.61 3.49 46.18 0.16 6.77 16 5 H 0.07 2.76 8.09 -2.39 -0.02 2.74 16 6 N -0.73 -36.51 4.94 -317.33 -1.57 -38.08 16 7 C -0.24 -12.79 9.96 84.03 0.84 -11.96 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 10 N -0.97 -59.77 13.06 21.65 0.28 -59.48 16 11 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 15 C -0.15 -4.82 6.77 31.99 0.22 -4.60 16 16 C 0.11 3.10 5.94 86.86 0.52 3.62 16 17 N -0.59 -19.79 3.08 -791.03 -2.44 -22.23 16 18 C 0.57 20.23 7.62 86.88 0.66 20.90 16 19 O -0.57 -24.27 15.21 -3.76 -0.06 -24.33 16 20 C 0.10 2.77 6.72 41.86 0.28 3.05 16 21 C -0.14 -3.71 9.26 22.73 0.21 -3.50 16 22 C 0.19 3.71 6.72 38.35 0.26 3.96 16 23 N -0.35 -6.47 3.81 -186.86 -0.71 -7.18 16 24 C 0.05 0.53 10.85 83.39 0.91 1.43 16 25 C -0.26 -2.36 10.80 22.00 0.24 -2.12 16 26 C 0.06 0.84 12.02 85.26 1.02 1.86 16 27 N -0.34 -7.97 11.98 -56.98 -0.68 -8.65 16 28 C -0.15 -1.47 9.54 22.55 0.21 -1.26 16 29 C 0.13 1.45 11.17 84.75 0.95 2.40 16 30 N -0.47 -9.70 6.59 -185.13 -1.22 -10.92 16 31 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16 32 H 0.06 2.79 6.81 -2.38 -0.02 2.77 16 33 H 0.05 2.32 6.74 -2.39 -0.02 2.30 16 34 H 0.38 20.54 5.07 -92.71 -0.47 20.07 16 35 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.12 2.82 5.88 -2.39 -0.01 2.80 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.13 4.23 7.39 -2.91 -0.02 4.21 16 41 H 0.23 -0.18 7.16 -2.91 -0.02 -0.20 16 42 H 0.19 0.42 8.06 -2.91 -0.02 0.40 16 43 H 0.22 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.20 -0.12 6.90 -2.91 -0.02 -0.14 16 45 H 0.22 0.26 8.06 -2.91 -0.02 0.24 16 Total: -1.00 -81.50 372.24 3.86 -77.64 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.56 Total: 29.04 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 7.67 Total: 16.27 kcal Atomic # 7 Polarization: -140.21 SS G_CDS: -6.34 Total: -146.54 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.06 Total: -24.33 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -81.50 3.86 -77.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986939784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.879 kcal (2) G-P(sol) polarization free energy of solvation -81.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds