Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.00070 * 2 1 4 4 C 1.54329 * 109.88685 * 238.90620 * 2 1 3 5 5 H 1.08999 * 110.86979 * 144.33595 * 4 2 1 6 6 N 1.46501 * 110.71704 * 21.13819 * 4 2 1 7 7 C 1.36934 * 119.99972 * 160.02518 * 6 4 2 8 8 H 1.07996 * 120.00459 * 359.97438 * 7 6 4 9 9 C 1.38820 * 119.99916 * 179.97438 * 7 6 4 10 10 N 1.31616 * 119.99918 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00037 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47240 * 180.02562 * 11 9 7 13 13 H 1.48507 * 109.47132 * 300.00273 * 11 9 7 14 14 H 1.48507 * 109.47020 * 60.00055 * 11 9 7 15 15 C 1.55154 * 102.94103 * 262.77518 * 4 2 1 16 16 C 1.54901 * 101.58387 * 324.49498 * 15 4 2 17 17 N 1.47018 * 109.88636 * 121.09673 * 2 1 3 18 18 C 1.34785 * 125.64746 * 300.51539 * 17 2 1 19 19 O 1.21510 * 119.99701 * 356.29268 * 18 17 2 20 20 C 1.48155 * 119.99958 * 176.28459 * 18 17 2 21 21 C 1.39939 * 120.89464 * 204.98238 * 20 18 17 22 22 C 1.38057 * 119.13732 * 179.73176 * 21 20 18 23 23 N 1.31838 * 120.98063 * 0.56179 * 22 21 20 24 24 C 1.32233 * 121.97372 * 359.71093 * 23 22 21 25 25 N 1.39840 * 119.62393 * 179.97438 * 24 23 22 26 26 C 1.35840 * 126.10220 * 359.73990 * 25 24 23 27 27 C 1.35279 * 107.61127 * 179.83805 * 26 25 24 28 28 C 1.39956 * 107.96823 * 0.42285 * 27 26 25 29 29 N 1.30812 * 108.36998 * 359.73918 * 28 27 26 30 30 C 1.38915 * 120.74935 * 0.02562 * 24 23 22 31 31 H 1.09002 * 109.46856 * 181.09489 * 1 2 3 32 32 H 1.09000 * 109.47341 * 301.09579 * 1 2 3 33 33 H 1.09004 * 109.47099 * 61.09492 * 1 2 3 34 34 H 0.97007 * 119.99962 * 340.02797 * 6 4 2 35 35 H 0.97005 * 120.00271 * 180.02562 * 10 9 7 36 36 H 1.09000 * 111.00019 * 82.57161 * 15 4 2 37 37 H 1.09006 * 111.00105 * 206.38051 * 15 4 2 38 38 H 1.08997 * 110.36921 * 155.84585 * 16 15 4 39 39 H 1.09003 * 110.37101 * 278.17346 * 16 15 4 40 40 H 1.07997 * 120.42883 * 0.02562 * 21 20 18 41 41 H 1.08003 * 119.50937 * 180.25268 * 22 21 20 42 42 H 1.07994 * 126.19279 * 359.97438 * 26 25 24 43 43 H 1.08000 * 126.01888 * 180.19146 * 27 26 25 44 44 H 1.08000 * 125.81525 * 179.73098 * 28 27 26 45 45 H 1.07997 * 120.52635 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 2.9651 -0.2842 -1.6211 6 7 1.0294 -0.8026 -2.2876 7 6 1.3879 -1.0415 -3.5874 8 1 2.4267 -1.1905 -3.8424 9 6 0.4160 -1.0924 -4.5773 10 7 -0.8499 -0.9103 -4.2666 11 14 0.9051 -1.4177 -6.3505 12 1 -0.3087 -1.4216 -7.2060 13 1 1.8318 -0.3528 -6.8117 14 1 1.5812 -2.7366 -6.4435 15 6 2.3520 -2.1694 -0.6924 16 6 2.8569 -1.8498 0.7367 17 7 2.0301 -0.7140 1.1838 18 6 1.7743 -0.3853 2.4657 19 8 1.1316 0.6141 2.7199 20 6 2.2765 -1.2426 3.5647 21 6 1.6403 -1.2594 4.8110 22 6 2.1358 -2.0761 5.8077 23 7 3.2004 -2.8266 5.6035 24 6 3.8367 -2.8387 4.4444 25 7 4.9617 -3.6533 4.2819 26 6 5.5029 -4.4679 5.2246 27 6 6.5730 -5.0819 4.6695 28 6 6.6979 -4.6247 3.3527 29 7 5.7351 -3.7704 3.1197 30 6 3.4010 -2.0505 3.3867 31 1 -0.3633 -1.0275 0.0196 32 1 -0.3634 0.5307 0.8800 33 1 -0.3633 0.4968 -0.8997 34 1 0.0963 -0.6683 -2.0586 35 1 -1.5291 -0.9462 -4.9583 36 1 1.4453 -2.7735 -0.6605 37 1 3.1267 -2.6620 -1.2801 38 1 2.7088 -2.7080 1.3921 39 1 3.9092 -1.5666 0.7128 40 1 0.7702 -0.6450 4.9893 41 1 1.6471 -2.0969 6.7705 42 1 5.1428 -4.6027 6.2338 43 1 7.2194 -5.7960 5.1578 44 1 7.4597 -4.9258 2.6488 45 1 3.9237 -2.0629 2.4417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986943198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = 132.332180 kcal Electronic energy + Delta-G solvation = -29257.141821 eV Core-core repulsion = 25278.260582 eV Total energy + Delta-G solvation = -3978.881239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.90786 -40.79880 -39.58097 -37.59554 -34.47054 -33.97080 -33.16706 -31.49939 -30.81554 -30.69043 -29.73242 -28.91676 -25.52798 -25.27306 -24.32270 -23.52322 -22.71903 -21.70699 -21.12956 -20.10495 -19.04445 -18.33757 -17.52474 -16.94546 -16.72964 -16.27599 -15.98887 -15.61108 -15.37753 -15.03578 -14.70336 -14.48972 -14.08515 -13.90179 -13.85518 -13.66066 -13.40466 -13.11111 -12.99630 -12.61705 -12.49115 -12.13206 -11.78754 -11.51694 -11.30080 -11.17008 -11.02033 -10.83591 -10.80806 -10.54673 -10.46010 -10.27413 -10.21838 -10.02047 -9.78260 -9.66165 -9.52698 -8.97984 -8.65929 -8.54339 -7.06502 -5.84670 -3.14818 0.22598 0.46867 1.68166 1.76109 2.44414 2.71061 2.88730 3.40020 3.44816 3.45688 3.46479 3.81289 4.05932 4.32897 4.49676 4.52548 4.57879 4.66905 4.78503 4.92925 5.07363 5.11347 5.25942 5.27591 5.30469 5.41461 5.45247 5.52351 5.57008 5.59068 5.70803 5.73195 5.92249 5.97932 6.06110 6.14846 6.18482 6.24253 6.46791 6.51786 6.61303 6.69741 6.74742 6.91707 7.00493 7.48723 7.53448 7.63292 8.06805 8.33641 9.45375 9.99367 10.34438 11.37672 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.002824 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.276938 B = 9913.683565 C =11618.503520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.077 0.923 4 C 0.174 3.826 5 H 0.065 0.935 6 N -0.717 5.717 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.291 1.291 13 H -0.285 1.285 14 H -0.285 1.285 15 C -0.153 4.153 16 C 0.087 3.913 17 N -0.596 5.596 18 C 0.570 3.430 19 O -0.528 6.528 20 C -0.053 4.053 21 C -0.132 4.132 22 C 0.130 3.870 23 N -0.497 5.497 24 C 0.365 3.635 25 N -0.327 5.327 26 C 0.079 3.921 27 C -0.266 4.266 28 C 0.066 3.934 29 N -0.282 5.282 30 C -0.148 4.148 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.391 0.609 35 H 0.257 0.743 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.155 0.845 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.156 0.844 44 H 0.195 0.805 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.719 -6.612 21.619 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.095 0.905 4 C 0.062 3.938 5 H 0.083 0.917 6 N -0.360 5.360 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.195 4.195 16 C -0.036 4.036 17 N -0.328 5.328 18 C 0.357 3.643 19 O -0.405 6.405 20 C -0.064 4.064 21 C -0.153 4.153 22 C -0.027 4.027 23 N -0.211 5.211 24 C 0.138 3.862 25 N -0.105 5.105 26 C -0.063 4.063 27 C -0.294 4.294 28 C -0.123 4.123 29 N -0.100 5.100 30 C -0.170 4.170 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.172 0.828 41 H 0.192 0.808 42 H 0.199 0.801 43 H 0.174 0.826 44 H 0.211 0.789 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.098 -5.759 21.435 24.816 hybrid contribution 0.129 -0.441 -0.867 0.982 sum 11.227 -6.201 20.568 24.239 Atomic orbital electron populations 1.22013 0.94269 1.02569 1.02888 1.21920 0.95572 0.95925 0.84044 0.90543 1.21189 0.93350 0.91971 0.87274 0.91678 1.42669 1.05148 1.85244 1.02957 1.19191 0.93055 1.41498 0.83969 0.91060 1.24757 0.95288 1.02367 0.98179 1.69645 0.99351 1.56116 1.32765 0.86245 0.77035 0.78097 0.84636 1.21681 1.21180 1.21190 1.23594 1.01864 1.01419 0.92576 1.22812 0.94525 0.88533 0.97745 1.48520 1.49316 1.30255 1.04755 1.17636 0.80520 0.84883 0.81271 1.90783 1.40401 1.26257 1.83080 1.20331 0.95038 0.95847 0.95192 1.22300 1.01560 0.99497 0.91975 1.22507 0.90258 0.90514 0.99424 1.66691 1.09672 1.23156 1.21555 1.17528 0.86815 0.91299 0.90538 1.45793 1.21231 1.33129 1.10331 1.22913 0.94764 0.92314 0.96271 1.21681 1.02762 1.08942 0.96017 1.24206 0.96848 0.94330 0.96920 1.77521 1.06408 1.22183 1.03899 1.22453 0.97701 0.95924 1.00959 0.92387 0.92184 0.89828 0.77073 0.93289 0.90544 0.90253 0.90706 0.90794 0.82769 0.80784 0.80073 0.82591 0.78871 0.81382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 7.95 37.16 0.30 -2.62 16 2 C 0.13 2.24 3.46 -66.95 -0.23 2.01 16 3 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 4 C 0.17 3.29 3.46 -66.09 -0.23 3.06 16 5 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 6 N -0.72 -17.03 5.02 -51.65 -0.26 -17.29 16 7 C -0.25 -6.53 9.98 -15.06 -0.15 -6.68 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 11 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 C -0.15 -2.51 6.77 -24.59 -0.17 -2.67 16 16 C 0.09 1.19 5.03 -2.53 -0.01 1.17 16 17 N -0.60 -9.22 3.08 -164.01 -0.51 -9.73 16 18 C 0.57 8.87 7.45 -12.18 -0.09 8.78 16 19 O -0.53 -9.56 15.74 5.36 0.08 -9.47 16 20 C -0.05 -0.67 5.75 -104.68 -0.60 -1.28 16 21 C -0.13 -1.37 9.68 -39.01 -0.38 -1.75 16 22 C 0.13 1.14 11.17 -17.62 -0.20 0.95 16 23 N -0.50 -5.34 9.83 -12.34 -0.12 -5.46 16 24 C 0.37 4.40 7.55 -154.42 -1.17 3.23 16 25 N -0.33 -3.79 3.81 -12.12 -0.05 -3.84 16 26 C 0.08 0.72 11.10 -16.83 -0.19 0.53 16 27 C -0.27 -2.03 10.80 -39.99 -0.43 -2.47 16 28 C 0.07 0.56 12.02 -17.34 -0.21 0.35 16 29 N -0.28 -3.27 11.83 30.64 0.36 -2.91 16 30 C -0.15 -1.83 7.65 -38.82 -0.30 -2.13 16 31 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.06 1.08 6.88 -51.93 -0.36 0.73 16 33 H 0.08 1.67 6.67 -51.93 -0.35 1.32 16 34 H 0.39 9.82 4.92 -40.82 -0.20 9.62 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.96 6.05 -51.93 -0.31 0.65 16 39 H 0.07 0.91 7.38 -51.93 -0.38 0.53 16 40 H 0.15 1.42 7.93 -52.49 -0.42 1.01 16 41 H 0.18 0.86 8.06 -52.48 -0.42 0.43 16 42 H 0.18 1.27 8.05 -52.49 -0.42 0.84 16 43 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.17 2.08 4.16 -52.49 -0.22 1.86 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -32.76 371.55 -8.92 -41.68 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.58 Total: 11.12 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -4.15 Total: 0.13 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: 0.16 Total: -65.80 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.76 -8.92 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986943198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.007 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds