Wall clock time and date at job start Sat Apr 11 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.00070 * 2 1 4 4 C 1.54329 * 109.88685 * 238.90620 * 2 1 3 5 5 H 1.08999 * 110.86979 * 144.33595 * 4 2 1 6 6 N 1.46501 * 110.71704 * 21.13819 * 4 2 1 7 7 C 1.36934 * 119.99972 * 160.02518 * 6 4 2 8 8 H 1.07996 * 120.00459 * 359.97438 * 7 6 4 9 9 C 1.38820 * 119.99916 * 179.97438 * 7 6 4 10 10 N 1.31616 * 119.99918 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00037 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47240 * 180.02562 * 11 9 7 13 13 H 1.48507 * 109.47132 * 300.00273 * 11 9 7 14 14 H 1.48507 * 109.47020 * 60.00055 * 11 9 7 15 15 C 1.55154 * 102.94103 * 262.77518 * 4 2 1 16 16 C 1.54901 * 101.58387 * 324.49498 * 15 4 2 17 17 N 1.47018 * 109.88636 * 121.09673 * 2 1 3 18 18 C 1.34785 * 125.64746 * 300.51539 * 17 2 1 19 19 O 1.21510 * 119.99701 * 356.29268 * 18 17 2 20 20 C 1.48155 * 119.99958 * 176.28459 * 18 17 2 21 21 C 1.39939 * 120.89464 * 204.98238 * 20 18 17 22 22 C 1.38057 * 119.13732 * 179.73176 * 21 20 18 23 23 N 1.31838 * 120.98063 * 0.56179 * 22 21 20 24 24 C 1.32233 * 121.97372 * 359.71093 * 23 22 21 25 25 N 1.39840 * 119.62393 * 179.97438 * 24 23 22 26 26 C 1.35840 * 126.10220 * 359.73990 * 25 24 23 27 27 C 1.35279 * 107.61127 * 179.83805 * 26 25 24 28 28 C 1.39956 * 107.96823 * 0.42285 * 27 26 25 29 29 N 1.30812 * 108.36998 * 359.73918 * 28 27 26 30 30 C 1.38915 * 120.74935 * 0.02562 * 24 23 22 31 31 H 1.09002 * 109.46856 * 181.09489 * 1 2 3 32 32 H 1.09000 * 109.47341 * 301.09579 * 1 2 3 33 33 H 1.09004 * 109.47099 * 61.09492 * 1 2 3 34 34 H 0.97007 * 119.99962 * 340.02797 * 6 4 2 35 35 H 0.97005 * 120.00271 * 180.02562 * 10 9 7 36 36 H 1.09000 * 111.00019 * 82.57161 * 15 4 2 37 37 H 1.09006 * 111.00105 * 206.38051 * 15 4 2 38 38 H 1.08997 * 110.36921 * 155.84585 * 16 15 4 39 39 H 1.09003 * 110.37101 * 278.17346 * 16 15 4 40 40 H 1.07997 * 120.42883 * 0.02562 * 21 20 18 41 41 H 1.08003 * 119.50937 * 180.25268 * 22 21 20 42 42 H 1.07994 * 126.19279 * 359.97438 * 26 25 24 43 43 H 1.08000 * 126.01888 * 180.19146 * 27 26 25 44 44 H 1.08000 * 125.81525 * 179.73098 * 28 27 26 45 45 H 1.07997 * 120.52635 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 2.9651 -0.2842 -1.6211 6 7 1.0294 -0.8026 -2.2876 7 6 1.3879 -1.0415 -3.5874 8 1 2.4267 -1.1905 -3.8424 9 6 0.4160 -1.0924 -4.5773 10 7 -0.8499 -0.9103 -4.2666 11 14 0.9051 -1.4177 -6.3505 12 1 -0.3087 -1.4216 -7.2060 13 1 1.8318 -0.3528 -6.8117 14 1 1.5812 -2.7366 -6.4435 15 6 2.3520 -2.1694 -0.6924 16 6 2.8569 -1.8498 0.7367 17 7 2.0301 -0.7140 1.1838 18 6 1.7743 -0.3853 2.4657 19 8 1.1316 0.6141 2.7199 20 6 2.2765 -1.2426 3.5647 21 6 1.6403 -1.2594 4.8110 22 6 2.1358 -2.0761 5.8077 23 7 3.2004 -2.8266 5.6035 24 6 3.8367 -2.8387 4.4444 25 7 4.9617 -3.6533 4.2819 26 6 5.5029 -4.4679 5.2246 27 6 6.5730 -5.0819 4.6695 28 6 6.6979 -4.6247 3.3527 29 7 5.7351 -3.7704 3.1197 30 6 3.4010 -2.0505 3.3867 31 1 -0.3633 -1.0275 0.0196 32 1 -0.3634 0.5307 0.8800 33 1 -0.3633 0.4968 -0.8997 34 1 0.0963 -0.6683 -2.0586 35 1 -1.5291 -0.9462 -4.9583 36 1 1.4453 -2.7735 -0.6605 37 1 3.1267 -2.6620 -1.2801 38 1 2.7088 -2.7080 1.3921 39 1 3.9092 -1.5666 0.7128 40 1 0.7702 -0.6450 4.9893 41 1 1.6471 -2.0969 6.7705 42 1 5.1428 -4.6027 6.2338 43 1 7.2194 -5.7960 5.1578 44 1 7.4597 -4.9258 2.6488 45 1 3.9237 -2.0629 2.4417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986943198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:40 Heat of formation + Delta-G solvation = 112.519401 kcal Electronic energy + Delta-G solvation = -29258.000968 eV Core-core repulsion = 25278.260582 eV Total energy + Delta-G solvation = -3979.740386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.65000 -41.81845 -40.62798 -38.96449 -36.10888 -34.77909 -34.32455 -33.10795 -32.19402 -31.38595 -30.74508 -30.31314 -27.00043 -26.38276 -25.49209 -24.95046 -23.87298 -22.68152 -21.79441 -21.19552 -20.36308 -19.50913 -19.23886 -18.03492 -17.64622 -17.30139 -17.00730 -16.66680 -16.52394 -16.36619 -16.02849 -15.57133 -15.48670 -15.03508 -14.82498 -14.68586 -14.53163 -14.38408 -14.03948 -13.70008 -13.64350 -13.52949 -13.19343 -12.98396 -12.95882 -12.85513 -12.51200 -12.13961 -12.10676 -11.84593 -11.68843 -11.62935 -11.57223 -11.40366 -11.14058 -10.93079 -10.77383 -10.22474 -9.88078 -9.34848 -9.03007 -7.94144 -5.23494 -0.62214 -0.36466 0.96644 1.05921 1.49390 1.51969 1.55706 1.58045 1.71637 1.85708 2.57067 2.60571 2.93307 3.25385 3.36577 3.45540 3.57361 3.72917 3.76803 3.85756 3.87392 4.01357 4.08083 4.10180 4.22897 4.30222 4.38214 4.45453 4.53222 4.56411 4.63105 4.63485 4.75140 4.76739 4.88511 4.97250 5.06542 5.13536 5.16652 5.22039 5.24655 5.41293 5.54016 5.60659 5.99999 6.26695 6.28873 6.30973 6.75302 6.82652 7.34868 8.06847 8.31258 9.29189 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.002824 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.276938 B = 9913.683565 C =11618.503520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.135 3.865 3 H 0.074 0.926 4 C 0.168 3.832 5 H 0.071 0.929 6 N -0.730 5.730 7 C -0.241 4.241 8 H 0.081 0.919 9 C -0.073 4.073 10 N -0.970 5.970 11 Si 0.973 3.027 12 H -0.300 1.300 13 H -0.278 1.278 14 H -0.277 1.277 15 C -0.144 4.144 16 C 0.099 3.901 17 N -0.597 5.597 18 C 0.569 3.431 19 O -0.559 6.559 20 C -0.067 4.067 21 C -0.132 4.132 22 C 0.146 3.854 23 N -0.500 5.500 24 C 0.357 3.643 25 N -0.344 5.344 26 C 0.064 3.936 27 C -0.257 4.257 28 C 0.067 3.933 29 N -0.322 5.322 30 C -0.157 4.157 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.381 0.619 35 H 0.251 0.749 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.165 0.835 41 H 0.218 0.782 42 H 0.198 0.802 43 H 0.187 0.813 44 H 0.225 0.775 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.932 -8.120 23.489 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.092 0.908 4 C 0.058 3.942 5 H 0.089 0.911 6 N -0.373 5.373 7 C -0.373 4.373 8 H 0.099 0.901 9 C -0.266 4.266 10 N -0.620 5.620 11 Si 0.802 3.198 12 H -0.226 1.226 13 H -0.204 1.204 14 H -0.203 1.203 15 C -0.184 4.184 16 C -0.022 4.022 17 N -0.329 5.329 18 C 0.358 3.642 19 O -0.438 6.438 20 C -0.078 4.078 21 C -0.154 4.154 22 C -0.012 4.012 23 N -0.214 5.214 24 C 0.130 3.870 25 N -0.122 5.122 26 C -0.076 4.076 27 C -0.285 4.285 28 C -0.121 4.121 29 N -0.141 5.141 30 C -0.179 4.179 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.218 0.782 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.182 0.818 41 H 0.235 0.765 42 H 0.215 0.785 43 H 0.204 0.796 44 H 0.241 0.759 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 13.391 -7.300 23.338 27.880 hybrid contribution -0.463 -0.008 -1.299 1.379 sum 12.929 -7.308 22.040 26.576 Atomic orbital electron populations 1.21833 0.95127 1.01595 1.01781 1.21678 0.94748 0.95946 0.84552 0.90753 1.21364 0.92308 0.93782 0.86767 0.91133 1.42827 1.05713 1.85449 1.03339 1.19608 0.93364 1.39216 0.85073 0.90087 1.25543 0.95365 1.03604 1.02063 1.69809 1.00301 1.58465 1.33459 0.85223 0.76306 0.78284 0.79989 1.22620 1.20439 1.20256 1.23401 1.01517 0.99197 0.94334 1.22828 0.95065 0.88417 0.95935 1.48505 1.49516 1.30462 1.04420 1.18078 0.79764 0.84737 0.81582 1.90758 1.41872 1.27667 1.83548 1.20140 0.96113 0.96429 0.95156 1.22523 1.01710 0.99795 0.91339 1.23204 0.89111 0.88509 1.00384 1.66839 1.10104 1.23460 1.20948 1.17686 0.87246 0.91357 0.90720 1.45917 1.21492 1.33874 1.10949 1.23390 0.95248 0.92175 0.96819 1.22095 1.02308 1.08554 0.95555 1.24861 0.96364 0.92983 0.97918 1.77484 1.07761 1.24000 1.04817 1.22323 0.97795 0.96545 1.01245 0.93291 0.92093 0.91863 0.78223 0.94059 0.92379 0.89128 0.89423 0.88735 0.81790 0.76527 0.78498 0.79624 0.75909 0.81838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 7.95 71.98 0.57 -4.96 16 2 C 0.13 4.76 3.46 45.34 0.16 4.91 16 3 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 4 C 0.17 6.34 3.46 46.18 0.16 6.50 16 5 H 0.07 2.60 8.12 -2.39 -0.02 2.58 16 6 N -0.73 -35.38 5.02 -317.32 -1.59 -36.97 16 7 C -0.24 -12.83 9.98 84.04 0.84 -11.99 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 10 N -0.97 -58.45 13.06 21.65 0.28 -58.17 16 11 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 12 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 C -0.14 -4.62 6.77 31.98 0.22 -4.40 16 16 C 0.10 2.62 5.03 86.85 0.44 3.06 16 17 N -0.60 -18.35 3.08 -791.08 -2.44 -20.79 16 18 C 0.57 17.62 7.45 86.88 0.65 18.27 16 19 O -0.56 -20.37 15.74 -3.75 -0.06 -20.43 16 20 C -0.07 -1.66 5.75 -19.90 -0.11 -1.78 16 21 C -0.13 -2.51 9.68 22.64 0.22 -2.29 16 22 C 0.15 2.14 11.17 84.65 0.95 3.08 16 23 N -0.50 -9.59 9.83 -192.94 -1.90 -11.49 16 24 C 0.36 8.08 7.55 132.77 1.00 9.09 16 25 N -0.34 -7.46 3.81 -192.27 -0.73 -8.19 16 26 C 0.06 1.03 11.10 83.39 0.93 1.95 16 27 C -0.26 -3.21 10.80 22.00 0.24 -2.97 16 28 C 0.07 0.99 12.02 85.26 1.02 2.01 16 29 N -0.32 -7.01 11.83 -56.98 -0.67 -7.69 16 30 C -0.16 -3.72 7.65 22.76 0.17 -3.54 16 31 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 32 H 0.06 2.28 6.88 -2.39 -0.02 2.26 16 33 H 0.06 2.66 6.67 -2.38 -0.02 2.64 16 34 H 0.38 19.87 4.92 -92.70 -0.46 19.41 16 35 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 38 H 0.09 2.16 6.05 -2.39 -0.01 2.15 16 39 H 0.09 2.16 7.38 -2.39 -0.02 2.14 16 40 H 0.16 2.75 7.93 -2.91 -0.02 2.73 16 41 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.20 2.29 8.05 -2.91 -0.02 2.26 16 43 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.22 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.16 3.91 4.16 -2.91 -0.01 3.89 16 Total: -1.00 -72.31 371.55 3.41 -68.90 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.58 Total: 34.32 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 7.91 Total: 13.30 kcal Atomic # 7 Polarization: -136.23 SS G_CDS: -7.05 Total: -143.28 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.06 Total: -20.43 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.31 3.41 -68.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986943198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.424 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds