Wall clock time and date at job start Sat Apr 11 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.99708 * 2 1 4 4 C 1.54319 * 109.88096 * 121.10115 * 2 1 3 5 5 H 1.08997 * 110.87812 * 23.17635 * 4 2 1 6 6 N 1.46505 * 110.71927 * 259.97159 * 4 2 1 7 7 C 1.36937 * 120.00031 * 160.02754 * 6 4 2 8 8 H 1.08000 * 120.00035 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99669 * 180.02562 * 7 6 4 10 10 N 1.31620 * 120.00109 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99894 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47244 * 270.00094 * 11 9 7 13 13 H 1.48497 * 109.46758 * 29.99975 * 11 9 7 14 14 H 1.48500 * 109.47218 * 149.99883 * 11 9 7 15 15 C 1.55162 * 102.94347 * 141.60945 * 4 2 1 16 16 C 1.54907 * 101.58127 * 324.49581 * 15 4 2 17 17 N 1.47027 * 109.87978 * 238.90634 * 2 1 3 18 18 C 1.34778 * 125.64877 * 61.67758 * 17 2 1 19 19 O 1.21596 * 119.99809 * 358.62527 * 18 17 2 20 20 C 1.47426 * 119.99748 * 178.62187 * 18 17 2 21 21 C 1.41364 * 126.40659 * 8.35318 * 20 18 17 22 22 N 1.30448 * 108.07917 * 179.81326 * 21 20 18 23 23 N 1.39939 * 108.91341 * 0.45425 * 22 21 20 24 24 C 1.39810 * 125.77786 * 179.71665 * 23 22 21 25 25 C 1.38943 * 119.68513 * 359.71342 * 24 23 22 26 26 C 1.38423 * 119.10254 * 179.77985 * 25 24 23 27 27 C 1.38790 * 118.48409 * 0.49276 * 26 25 24 28 28 C 1.38132 * 119.29348 * 359.74902 * 27 26 25 29 29 N 1.31889 * 120.84040 * 0.02562 * 28 27 26 30 30 C 1.34620 * 108.44515 * 359.70288 * 23 22 21 31 31 H 1.08995 * 109.46834 * 298.90213 * 1 2 3 32 32 H 1.08996 * 109.47151 * 58.90661 * 1 2 3 33 33 H 1.09004 * 109.47162 * 178.90184 * 1 2 3 34 34 H 0.97002 * 119.99950 * 340.02090 * 6 4 2 35 35 H 0.97005 * 119.99795 * 179.97438 * 10 9 7 36 36 H 1.08998 * 111.00169 * 82.57077 * 15 4 2 37 37 H 1.09005 * 111.00442 * 206.41969 * 15 4 2 38 38 H 1.08996 * 110.36597 * 155.84639 * 16 15 4 39 39 H 1.09007 * 110.36552 * 278.17421 * 16 15 4 40 40 H 1.08001 * 125.96255 * 0.02562 * 21 20 18 41 41 H 1.08000 * 120.44994 * 0.02562 * 25 24 23 42 42 H 1.08010 * 120.75594 * 180.26648 * 26 25 24 43 43 H 1.08004 * 120.35321 * 179.77605 * 27 26 25 44 44 H 1.07994 * 119.57577 * 180.02562 * 28 27 26 45 45 H 1.08001 * 126.31827 * 180.02562 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7496 1.2426 5 1 1.3065 -1.4460 1.6210 6 7 2.4555 0.1959 2.2875 7 6 2.5575 -0.2228 3.5873 8 1 2.3423 -1.2500 3.8422 9 6 2.9367 0.6733 4.5774 10 7 3.1985 1.9252 4.2667 11 14 3.0753 0.1023 6.3506 12 1 1.7690 0.2845 7.0328 13 1 3.4531 -1.3335 6.3801 14 1 4.1140 0.9019 7.0484 15 6 3.2876 -1.5144 0.6922 16 6 2.8145 -1.8795 -0.7369 17 7 2.0300 -0.7141 -1.1840 18 6 1.8084 -0.3612 -2.4658 19 8 1.1229 0.6107 -2.7190 20 6 2.3973 -1.1535 -3.5607 21 6 3.0710 -2.3898 -3.4334 22 7 3.4401 -2.7742 -4.6241 23 7 3.0361 -1.8122 -5.5568 24 6 3.2565 -1.8681 -6.9363 25 6 3.9367 -2.9502 -7.4812 26 6 4.1442 -2.9954 -8.8490 27 6 3.6707 -1.9469 -9.6254 28 6 3.0072 -0.9002 -9.0153 29 7 2.8206 -0.8872 -7.7097 30 6 2.3992 -0.8241 -4.9009 31 1 -0.3633 0.4967 0.8996 32 1 -0.3633 0.5307 -0.8800 33 1 -0.3634 -1.0275 -0.0197 34 1 2.6485 1.1186 2.0586 35 1 3.4631 2.5515 4.9587 36 1 4.1654 -0.8690 0.6603 37 1 3.4852 -2.4112 1.2795 38 1 3.6716 -2.0338 -1.3924 39 1 2.1885 -2.7715 -0.7130 40 1 3.2463 -2.9247 -2.5117 41 1 4.2953 -3.7471 -6.8466 42 1 4.6659 -3.8260 -9.3014 43 1 3.8191 -1.9496 -10.6952 44 1 2.6365 -0.0822 -9.6151 45 1 1.9688 0.0627 -5.3421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987108262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:43 Heat of formation + Delta-G solvation = 122.317592 kcal Electronic energy + Delta-G solvation = -28478.800929 eV Core-core repulsion = 24499.485425 eV Total energy + Delta-G solvation = -3979.315505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07277 -40.48667 -39.55914 -37.25185 -34.42270 -33.94610 -33.05895 -31.72852 -30.95549 -30.78702 -29.92071 -28.85611 -25.41890 -24.92232 -24.34933 -23.23228 -23.09508 -21.46938 -21.27280 -20.02109 -19.45263 -18.35852 -17.22667 -16.98605 -16.75297 -16.21909 -15.94810 -15.86099 -15.32457 -14.93422 -14.64075 -14.59320 -14.10345 -13.76867 -13.69024 -13.61771 -13.34588 -13.10232 -12.81398 -12.72491 -12.60723 -12.14537 -11.81999 -11.52542 -11.35693 -11.09833 -11.02368 -10.91630 -10.80530 -10.57542 -10.47206 -10.23407 -10.22099 -10.00087 -9.76269 -9.58682 -9.51115 -8.93213 -8.74100 -8.33133 -7.01840 -5.80500 -3.10848 0.14578 0.63029 1.55731 1.64872 1.93919 3.14073 3.25095 3.41928 3.47013 3.48874 3.50113 3.78846 4.01889 4.32821 4.42108 4.49826 4.55557 4.59843 4.70741 4.83201 5.00673 5.07275 5.17983 5.21093 5.30915 5.42651 5.44563 5.49326 5.56920 5.59713 5.70429 5.81456 5.90733 5.94916 6.05345 6.13396 6.15147 6.32073 6.49043 6.58937 6.60966 6.65981 6.78795 6.92385 6.95139 7.40997 7.66700 7.80038 8.36507 8.42171 9.48331 10.03180 10.37803 11.41624 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029816 B = 0.002003 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.853543 B =13977.278153 C =14401.890250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.079 0.921 4 C 0.176 3.824 5 H 0.065 0.935 6 N -0.715 5.715 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.281 1.281 14 H -0.292 1.292 15 C -0.156 4.156 16 C 0.085 3.915 17 N -0.602 5.602 18 C 0.606 3.394 19 O -0.546 6.546 20 C -0.273 4.273 21 C 0.086 3.914 22 N -0.289 5.289 23 N -0.319 5.319 24 C 0.368 3.632 25 C -0.160 4.160 26 C -0.052 4.052 27 C -0.186 4.186 28 C 0.135 3.865 29 N -0.505 5.505 30 C 0.152 3.848 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.214 0.786 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.169 0.831 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -11.675 -27.645 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 H 0.097 0.903 4 C 0.064 3.936 5 H 0.083 0.917 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.207 1.207 14 H -0.218 1.218 15 C -0.197 4.197 16 C -0.038 4.038 17 N -0.335 5.335 18 C 0.395 3.605 19 O -0.425 6.425 20 C -0.287 4.287 21 C -0.103 4.103 22 N -0.106 5.106 23 N -0.093 5.093 24 C 0.141 3.859 25 C -0.183 4.183 26 C -0.078 4.078 27 C -0.206 4.206 28 C -0.023 4.023 29 N -0.218 5.218 30 C 0.005 3.995 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.230 0.770 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.186 0.814 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.087 -11.401 -28.021 30.271 hybrid contribution 0.306 -0.051 1.034 1.079 sum 1.393 -11.452 -26.987 29.349 Atomic orbital electron populations 1.22053 0.94820 1.01642 1.02763 1.21896 0.94465 0.96877 0.84091 0.90344 1.21250 0.93508 0.91633 0.87163 0.91668 1.42351 1.80938 1.09137 1.03102 1.19197 1.39194 0.95142 0.83831 0.90975 1.24770 1.02150 0.95660 0.98143 1.69668 1.52536 1.02991 1.32515 0.86181 0.77334 0.77587 0.84992 1.21676 1.20715 1.21802 1.23592 1.01512 1.01837 0.92788 1.22794 0.94802 0.88762 0.97441 1.48277 1.52067 1.28549 1.04649 1.16694 0.79946 0.83313 0.80521 1.90766 1.40073 1.28351 1.83302 1.20409 1.14372 1.00231 0.93690 1.25160 0.93937 0.94582 0.96584 1.77277 1.23851 1.11793 0.97713 1.45448 1.42892 1.16850 1.04148 1.17731 0.95137 0.92015 0.81028 1.21668 1.01084 0.99144 0.96359 1.21572 0.95643 0.98140 0.92495 1.22215 1.00882 0.95510 1.02004 1.22580 0.93927 0.97618 0.88203 1.66885 1.21514 1.26255 1.07148 1.23152 0.91872 0.93259 0.91167 0.91162 0.91862 0.93083 0.77967 0.93393 0.90504 0.90454 0.90536 0.91283 0.77028 0.83142 0.83667 0.83858 0.81406 0.78714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.10 37.16 0.34 -2.27 16 2 C 0.13 2.31 3.21 -66.95 -0.22 2.09 16 3 H 0.08 1.57 7.69 -51.93 -0.40 1.17 16 4 C 0.18 3.31 3.11 -66.09 -0.21 3.11 16 5 H 0.07 1.22 7.84 -51.93 -0.41 0.82 16 6 N -0.71 -17.17 5.25 -51.65 -0.27 -17.44 16 7 C -0.24 -6.44 9.98 -15.06 -0.15 -6.59 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 11 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 C -0.16 -2.47 6.77 -24.58 -0.17 -2.63 16 16 C 0.09 1.08 5.27 -2.53 -0.01 1.06 16 17 N -0.60 -9.42 3.06 -164.27 -0.50 -9.92 16 18 C 0.61 9.96 7.64 -12.52 -0.10 9.86 16 19 O -0.55 -10.62 15.91 5.28 0.08 -10.54 16 20 C -0.27 -3.76 6.06 -105.05 -0.64 -4.40 16 21 C 0.09 1.00 10.29 -16.95 -0.17 0.83 16 22 N -0.29 -3.52 11.74 30.88 0.36 -3.15 16 23 N -0.32 -3.94 3.76 -11.74 -0.04 -3.98 16 24 C 0.37 3.96 7.54 -154.38 -1.16 2.79 16 25 C -0.16 -1.32 9.69 -39.25 -0.38 -1.70 16 26 C -0.05 -0.28 10.17 -39.31 -0.40 -0.68 16 27 C -0.19 -0.87 10.11 -39.42 -0.40 -1.27 16 28 C 0.13 0.87 11.18 -17.57 -0.20 0.68 16 29 N -0.51 -5.08 9.82 -12.29 -0.12 -5.20 16 30 C 0.15 1.98 10.88 -16.41 -0.18 1.80 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.11 6.86 -51.93 -0.36 0.76 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.39 10.06 7.51 -40.82 -0.31 9.75 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 0.82 5.27 -51.93 -0.27 0.54 16 39 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 40 H 0.21 1.89 4.80 -52.49 -0.25 1.64 16 41 H 0.15 1.18 7.67 -52.49 -0.40 0.78 16 42 H 0.15 0.36 8.06 -52.48 -0.42 -0.07 16 43 H 0.14 0.24 8.06 -52.48 -0.42 -0.18 16 44 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.20 2.39 8.03 -52.49 -0.42 1.97 16 LS Contribution 376.53 15.07 5.67 5.67 Total: -1.00 -33.82 376.53 -8.99 -42.81 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.74 Total: 9.48 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -4.13 Total: 2.28 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: 0.15 Total: -66.55 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.82 -8.99 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987108262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.126 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds