Wall clock time and date at job start Sat Apr 11 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.99708 * 2 1 4 4 C 1.54319 * 109.88096 * 121.10115 * 2 1 3 5 5 H 1.08997 * 110.87812 * 23.17635 * 4 2 1 6 6 N 1.46505 * 110.71927 * 259.97159 * 4 2 1 7 7 C 1.36937 * 120.00031 * 160.02754 * 6 4 2 8 8 H 1.08000 * 120.00035 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99669 * 180.02562 * 7 6 4 10 10 N 1.31620 * 120.00109 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99894 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47244 * 270.00094 * 11 9 7 13 13 H 1.48497 * 109.46758 * 29.99975 * 11 9 7 14 14 H 1.48500 * 109.47218 * 149.99883 * 11 9 7 15 15 C 1.55162 * 102.94347 * 141.60945 * 4 2 1 16 16 C 1.54907 * 101.58127 * 324.49581 * 15 4 2 17 17 N 1.47027 * 109.87978 * 238.90634 * 2 1 3 18 18 C 1.34778 * 125.64877 * 61.67758 * 17 2 1 19 19 O 1.21596 * 119.99809 * 358.62527 * 18 17 2 20 20 C 1.47426 * 119.99748 * 178.62187 * 18 17 2 21 21 C 1.41364 * 126.40659 * 8.35318 * 20 18 17 22 22 N 1.30448 * 108.07917 * 179.81326 * 21 20 18 23 23 N 1.39939 * 108.91341 * 0.45425 * 22 21 20 24 24 C 1.39810 * 125.77786 * 179.71665 * 23 22 21 25 25 C 1.38943 * 119.68513 * 359.71342 * 24 23 22 26 26 C 1.38423 * 119.10254 * 179.77985 * 25 24 23 27 27 C 1.38790 * 118.48409 * 0.49276 * 26 25 24 28 28 C 1.38132 * 119.29348 * 359.74902 * 27 26 25 29 29 N 1.31889 * 120.84040 * 0.02562 * 28 27 26 30 30 C 1.34620 * 108.44515 * 359.70288 * 23 22 21 31 31 H 1.08995 * 109.46834 * 298.90213 * 1 2 3 32 32 H 1.08996 * 109.47151 * 58.90661 * 1 2 3 33 33 H 1.09004 * 109.47162 * 178.90184 * 1 2 3 34 34 H 0.97002 * 119.99950 * 340.02090 * 6 4 2 35 35 H 0.97005 * 119.99795 * 179.97438 * 10 9 7 36 36 H 1.08998 * 111.00169 * 82.57077 * 15 4 2 37 37 H 1.09005 * 111.00442 * 206.41969 * 15 4 2 38 38 H 1.08996 * 110.36597 * 155.84639 * 16 15 4 39 39 H 1.09007 * 110.36552 * 278.17421 * 16 15 4 40 40 H 1.08001 * 125.96255 * 0.02562 * 21 20 18 41 41 H 1.08000 * 120.44994 * 0.02562 * 25 24 23 42 42 H 1.08010 * 120.75594 * 180.26648 * 26 25 24 43 43 H 1.08004 * 120.35321 * 179.77605 * 27 26 25 44 44 H 1.07994 * 119.57577 * 180.02562 * 28 27 26 45 45 H 1.08001 * 126.31827 * 180.02562 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7496 1.2426 5 1 1.3065 -1.4460 1.6210 6 7 2.4555 0.1959 2.2875 7 6 2.5575 -0.2228 3.5873 8 1 2.3423 -1.2500 3.8422 9 6 2.9367 0.6733 4.5774 10 7 3.1985 1.9252 4.2667 11 14 3.0753 0.1023 6.3506 12 1 1.7690 0.2845 7.0328 13 1 3.4531 -1.3335 6.3801 14 1 4.1140 0.9019 7.0484 15 6 3.2876 -1.5144 0.6922 16 6 2.8145 -1.8795 -0.7369 17 7 2.0300 -0.7141 -1.1840 18 6 1.8084 -0.3612 -2.4658 19 8 1.1229 0.6107 -2.7190 20 6 2.3973 -1.1535 -3.5607 21 6 3.0710 -2.3898 -3.4334 22 7 3.4401 -2.7742 -4.6241 23 7 3.0361 -1.8122 -5.5568 24 6 3.2565 -1.8681 -6.9363 25 6 3.9367 -2.9502 -7.4812 26 6 4.1442 -2.9954 -8.8490 27 6 3.6707 -1.9469 -9.6254 28 6 3.0072 -0.9002 -9.0153 29 7 2.8206 -0.8872 -7.7097 30 6 2.3992 -0.8241 -4.9009 31 1 -0.3633 0.4967 0.8996 32 1 -0.3633 0.5307 -0.8800 33 1 -0.3634 -1.0275 -0.0197 34 1 2.6485 1.1186 2.0586 35 1 3.4631 2.5515 4.9587 36 1 4.1654 -0.8690 0.6603 37 1 3.4852 -2.4112 1.2795 38 1 3.6716 -2.0338 -1.3924 39 1 2.1885 -2.7715 -0.7130 40 1 3.2463 -2.9247 -2.5117 41 1 4.2953 -3.7471 -6.8466 42 1 4.6659 -3.8260 -9.3014 43 1 3.8191 -1.9496 -10.6952 44 1 2.6365 -0.0822 -9.6151 45 1 1.9688 0.0627 -5.3421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987108262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:43 Heat of formation + Delta-G solvation = 100.714847 kcal Electronic energy + Delta-G solvation = -28479.737695 eV Core-core repulsion = 24499.485425 eV Total energy + Delta-G solvation = -3980.252270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.95856 -41.27912 -40.67292 -38.66112 -35.95086 -34.96029 -33.66948 -33.30342 -32.34465 -31.71834 -31.05162 -30.15957 -26.93289 -25.91718 -25.13296 -24.62712 -24.23017 -22.48104 -22.21527 -21.41418 -20.55475 -19.43888 -19.02790 -17.77500 -17.50121 -17.38558 -16.88788 -16.64331 -16.56828 -16.20481 -15.98174 -15.46488 -15.33835 -15.23515 -14.76292 -14.64723 -14.47386 -14.23742 -14.06212 -13.99850 -13.59803 -13.23283 -13.05527 -13.04615 -12.84839 -12.57317 -12.46345 -12.34807 -12.15408 -12.03765 -11.67736 -11.67035 -11.46566 -11.02548 -10.97820 -10.84878 -10.77444 -10.42710 -9.68977 -9.43618 -8.98952 -7.90815 -5.20512 -0.53882 0.14630 0.66524 0.85416 1.03096 1.51437 1.52957 1.61065 1.90858 2.29666 2.60121 2.71225 3.08166 3.31458 3.40752 3.55974 3.68613 3.76955 3.87902 3.88655 3.98837 4.02221 4.08893 4.20173 4.21189 4.31928 4.38224 4.44453 4.45664 4.55582 4.69529 4.71414 4.73441 4.94841 4.95950 5.08951 5.10492 5.19351 5.26079 5.28333 5.40035 5.41441 5.50882 5.59052 5.80934 6.11978 6.29376 6.55565 6.76688 7.14134 7.35843 8.08494 8.32033 9.32768 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029816 B = 0.002003 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.853543 B =13977.278153 C =14401.890250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.136 3.864 3 H 0.045 0.955 4 C 0.171 3.829 5 H 0.074 0.926 6 N -0.730 5.730 7 C -0.233 4.233 8 H 0.086 0.914 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.290 1.290 13 H -0.264 1.264 14 H -0.301 1.301 15 C -0.147 4.147 16 C 0.090 3.910 17 N -0.602 5.602 18 C 0.605 3.395 19 O -0.587 6.587 20 C -0.290 4.290 21 C 0.094 3.906 22 N -0.294 5.294 23 N -0.317 5.317 24 C 0.324 3.676 25 C -0.166 4.166 26 C -0.048 4.048 27 C -0.166 4.166 28 C 0.121 3.879 29 N -0.534 5.534 30 C 0.148 3.852 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.370 0.630 35 H 0.249 0.751 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.240 0.760 41 H 0.150 0.850 42 H 0.180 0.820 43 H 0.183 0.817 44 H 0.194 0.806 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 -15.038 -29.984 33.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.063 0.937 4 C 0.061 3.939 5 H 0.092 0.908 6 N -0.369 5.369 7 C -0.364 4.364 8 H 0.103 0.897 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.218 1.218 13 H -0.188 1.188 14 H -0.228 1.228 15 C -0.188 4.188 16 C -0.032 4.032 17 N -0.334 5.334 18 C 0.396 3.604 19 O -0.469 6.469 20 C -0.304 4.304 21 C -0.094 4.094 22 N -0.111 5.111 23 N -0.090 5.090 24 C 0.099 3.901 25 C -0.188 4.188 26 C -0.074 4.074 27 C -0.185 4.185 28 C -0.037 4.037 29 N -0.248 5.248 30 C 0.000 4.000 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.202 0.798 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.256 0.744 41 H 0.168 0.832 42 H 0.198 0.802 43 H 0.200 0.800 44 H 0.211 0.789 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.826 -14.860 -30.411 33.896 hybrid contribution 0.078 0.971 1.464 1.758 sum 1.904 -13.889 -28.947 32.163 Atomic orbital electron populations 1.21945 0.94174 1.02524 1.01641 1.21623 0.94908 0.95423 0.84917 0.93655 1.21450 0.95084 0.91075 0.86274 0.90806 1.42535 1.81303 1.09341 1.03700 1.19633 1.36600 0.95423 0.84766 0.89651 1.25587 1.03400 0.95896 1.02181 1.69842 1.54951 1.04258 1.33241 0.85137 0.76679 0.77739 0.80179 1.21760 1.18844 1.22840 1.23406 0.98938 1.01512 0.94922 1.23016 0.96037 0.88552 0.95578 1.48270 1.52138 1.29136 1.03875 1.17051 0.79378 0.82945 0.81040 1.90737 1.42017 1.30236 1.83916 1.20161 1.15998 1.01271 0.92954 1.25464 0.93011 0.93606 0.97359 1.77233 1.24036 1.12043 0.97818 1.45628 1.42112 1.16241 1.05059 1.18061 0.97802 0.93732 0.80462 1.21836 1.00807 0.98345 0.97839 1.22036 0.94930 0.99228 0.91234 1.22683 0.98166 0.93888 1.03805 1.23200 0.94043 0.99155 0.87277 1.66840 1.22403 1.26771 1.08778 1.23170 0.91950 0.93588 0.91338 0.92225 0.92993 0.91095 0.79785 0.94233 0.92628 0.88654 0.87892 0.87699 0.74398 0.83226 0.80219 0.79979 0.78918 0.79005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.10 71.98 0.65 -4.29 16 2 C 0.14 4.90 3.21 45.34 0.15 5.04 16 3 H 0.05 1.94 7.69 -2.39 -0.02 1.92 16 4 C 0.17 6.33 3.11 46.18 0.14 6.47 16 5 H 0.07 2.64 7.84 -2.39 -0.02 2.62 16 6 N -0.73 -35.65 5.25 -317.32 -1.67 -37.32 16 7 C -0.23 -12.33 9.98 84.03 0.84 -11.49 16 8 H 0.09 4.22 7.83 -2.91 -0.02 4.20 16 9 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 10 N -0.97 -59.53 13.06 21.65 0.28 -59.24 16 11 Si 0.97 45.31 29.55 68.60 2.03 47.33 16 12 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 13 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 15 C -0.15 -4.39 6.77 31.99 0.22 -4.18 16 16 C 0.09 2.03 5.27 86.85 0.46 2.48 16 17 N -0.60 -18.49 3.06 -791.89 -2.43 -20.92 16 18 C 0.61 20.08 7.64 86.66 0.66 20.74 16 19 O -0.59 -23.83 15.91 -4.02 -0.06 -23.90 16 20 C -0.29 -7.89 6.06 -20.14 -0.12 -8.01 16 21 C 0.09 2.02 10.29 85.67 0.88 2.90 16 22 N -0.29 -6.78 11.74 -56.22 -0.66 -7.44 16 23 N -0.32 -7.76 3.76 -191.05 -0.72 -8.48 16 24 C 0.32 6.82 7.54 132.77 1.00 7.82 16 25 C -0.17 -2.48 9.69 22.48 0.22 -2.26 16 26 C -0.05 -0.36 10.17 22.45 0.23 -0.13 16 27 C -0.17 -0.95 10.11 22.38 0.23 -0.72 16 28 C 0.12 1.32 11.18 84.66 0.95 2.26 16 29 N -0.53 -10.49 9.82 -192.81 -1.89 -12.39 16 30 C 0.15 3.95 10.88 84.21 0.92 4.86 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 1.89 6.86 -2.39 -0.02 1.87 16 33 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.37 20.19 7.51 -92.71 -0.70 19.50 16 35 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 38 H 0.10 1.85 5.27 -2.39 -0.01 1.84 16 39 H 0.11 1.73 8.03 -2.38 -0.02 1.72 16 40 H 0.24 3.42 4.80 -2.91 -0.01 3.40 16 41 H 0.15 2.15 7.67 -2.91 -0.02 2.13 16 42 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 43 H 0.18 -0.37 8.06 -2.91 -0.02 -0.39 16 44 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 45 H 0.19 5.04 8.03 -2.91 -0.02 5.02 16 Total: -1.00 -77.52 376.53 3.10 -74.42 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.34 Total: 30.39 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 7.88 Total: 17.54 kcal Atomic # 7 Polarization: -138.71 SS G_CDS: -7.08 Total: -145.79 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -77.52 3.10 -74.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987108262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.138 kcal (2) G-P(sol) polarization free energy of solvation -77.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds