Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.87265 * 2 1 4 4 C 1.54318 * 109.88391 * 238.97920 * 2 1 3 5 5 H 1.09001 * 110.72191 * 336.59414 * 4 2 1 6 6 N 1.46497 * 110.72106 * 99.69620 * 4 2 1 7 7 C 1.36936 * 120.00130 * 204.99986 * 6 4 2 8 8 H 1.08007 * 119.99895 * 0.02562 * 7 6 4 9 9 C 1.38814 * 120.00146 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00014 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99993 * 359.97438 * 9 7 6 12 12 H 1.48492 * 109.47113 * 90.00085 * 11 9 7 13 13 H 1.48504 * 109.47377 * 210.00529 * 11 9 7 14 14 H 1.48507 * 109.47008 * 330.00072 * 11 9 7 15 15 C 1.55166 * 102.94149 * 218.23591 * 4 2 1 16 16 C 1.54907 * 101.58144 * 35.50215 * 15 4 2 17 17 N 1.47027 * 110.01097 * 121.09498 * 2 1 3 18 18 C 1.34781 * 125.64341 * 298.38251 * 17 2 1 19 19 O 1.21604 * 120.00161 * 354.14880 * 18 17 2 20 20 C 1.47423 * 119.99474 * 174.14132 * 18 17 2 21 21 C 1.41368 * 126.41086 * 352.83300 * 20 18 17 22 22 N 1.30443 * 108.08415 * 179.85396 * 21 20 18 23 23 N 1.39942 * 108.91188 * 0.40811 * 22 21 20 24 24 C 1.39807 * 125.77543 * 179.76727 * 23 22 21 25 25 C 1.38950 * 119.69087 * 359.69389 * 24 23 22 26 26 C 1.38418 * 119.10745 * 179.70460 * 25 24 23 27 27 C 1.38797 * 118.48213 * 0.55466 * 26 25 24 28 28 C 1.38133 * 119.29255 * 359.72499 * 27 26 25 29 29 N 1.31888 * 120.84347 * 359.97438 * 28 27 26 30 30 C 1.34625 * 108.44761 * 359.73962 * 23 22 21 31 31 H 1.09004 * 109.47069 * 180.70622 * 1 2 3 32 32 H 1.08996 * 109.47458 * 300.70292 * 1 2 3 33 33 H 1.09004 * 109.47076 * 60.70631 * 1 2 3 34 34 H 0.97001 * 119.99914 * 25.00018 * 6 4 2 35 35 H 0.97000 * 119.99939 * 179.97438 * 10 9 7 36 36 H 1.09000 * 111.00381 * 153.57711 * 15 4 2 37 37 H 1.09001 * 111.00208 * 277.42377 * 15 4 2 38 38 H 1.08994 * 110.36890 * 81.83093 * 16 15 4 39 39 H 1.09003 * 110.36448 * 204.04298 * 16 15 4 40 40 H 1.08007 * 125.95600 * 359.97438 * 21 20 18 41 41 H 1.08000 * 120.43870 * 359.97438 * 25 24 23 42 42 H 1.07999 * 120.75635 * 180.27989 * 26 25 24 43 43 H 1.07998 * 120.35313 * 179.70411 * 27 26 25 44 44 H 1.08001 * 119.57623 * 179.97438 * 28 27 26 45 45 H 1.07994 * 126.31623 * 180.02562 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2436 5 1 1.3062 -1.4458 -1.6184 6 7 2.4481 0.1989 -2.2901 7 6 2.4491 -0.1925 -3.6024 8 1 2.1594 -1.1991 -3.8659 9 6 2.8223 0.7044 -4.5939 10 7 2.8227 0.3283 -5.8553 11 14 3.3225 2.4455 -4.1383 12 1 4.7862 2.4916 -3.8922 13 1 2.9783 3.3667 -5.2511 14 1 2.6005 2.8623 -2.9093 15 6 3.2900 -1.5101 -0.6951 16 6 2.8195 -1.8769 0.7345 17 7 2.0331 -0.7135 1.1830 18 6 1.8126 -0.3615 2.4652 19 8 1.2379 0.6795 2.7198 20 6 2.2682 -1.2386 3.5590 21 6 2.8174 -2.5341 3.4224 22 7 3.0984 -2.9825 4.6147 23 7 2.7395 -2.0147 5.5596 24 6 2.8835 -2.1323 6.9452 25 6 3.4198 -3.2948 7.4852 26 6 3.5627 -3.3959 8.8583 27 6 3.1515 -2.3302 9.6468 28 6 2.6214 -1.2071 9.0421 29 7 2.5032 -1.1375 7.7304 30 6 2.2325 -0.9510 4.9084 31 1 -0.3633 -1.0276 0.0127 32 1 -0.3634 0.5247 0.8836 33 1 -0.3633 0.5028 -0.8963 34 1 2.7079 1.1030 -2.0535 35 1 3.0831 0.9551 -6.5482 36 1 3.4888 -2.4063 -1.2830 37 1 4.1665 -0.8628 -0.6641 38 1 2.1956 -2.7703 0.7110 39 1 3.6779 -2.0316 1.3883 40 1 2.9783 -3.0599 2.4928 41 1 3.7250 -4.1068 6.8419 42 1 3.9805 -4.2854 9.3061 43 1 3.2447 -2.3787 10.7217 44 1 2.2996 -0.3754 9.6513 45 1 1.8661 -0.0404 5.3588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987108264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = 100.139807 kcal Electronic energy + Delta-G solvation = -28545.790231 eV Core-core repulsion = 24565.513026 eV Total energy + Delta-G solvation = -3980.277205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.95575 -41.29037 -40.69333 -38.71999 -36.06330 -34.95616 -33.69662 -33.47273 -32.40826 -31.76373 -31.31571 -30.27903 -26.99054 -25.90733 -25.04997 -24.40198 -24.24122 -22.46252 -22.22862 -21.57711 -20.57745 -19.63175 -19.25507 -17.78718 -17.55858 -17.40278 -16.89700 -16.67336 -16.49883 -16.26496 -16.03718 -15.67846 -15.30702 -15.08966 -14.73279 -14.68375 -14.53569 -14.27903 -14.11068 -14.03167 -13.71942 -13.37854 -13.28803 -13.05719 -12.99228 -12.58922 -12.47972 -12.38469 -12.22943 -11.97367 -11.79705 -11.68178 -11.48353 -11.02820 -11.02295 -10.90580 -10.78033 -10.42967 -9.70634 -9.44655 -9.29346 -8.00165 -5.33558 -0.54147 0.14220 0.65686 0.85082 1.03191 1.40315 1.40907 1.47663 1.89629 2.28367 2.49309 2.70860 3.07225 3.29761 3.31215 3.53069 3.55961 3.70923 3.78750 3.88952 3.97004 3.98739 4.05639 4.16362 4.21008 4.30923 4.36186 4.38343 4.44626 4.50091 4.69110 4.69926 4.72091 4.91213 4.95282 5.04901 5.10438 5.19172 5.24430 5.27073 5.37152 5.40976 5.45986 5.80237 5.80778 6.12151 6.23618 6.53226 6.76169 7.07559 7.12882 7.83475 8.00915 9.20569 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028329 B = 0.002097 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.132391 B =13352.235570 C =13672.996568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.132 3.868 3 H 0.053 0.947 4 C 0.174 3.826 5 H 0.077 0.923 6 N -0.744 5.744 7 C -0.221 4.221 8 H 0.069 0.931 9 C -0.058 4.058 10 N -0.979 5.979 11 Si 0.944 3.056 12 H -0.280 1.280 13 H -0.298 1.298 14 H -0.259 1.259 15 C -0.148 4.148 16 C 0.093 3.907 17 N -0.603 5.603 18 C 0.608 3.392 19 O -0.587 6.587 20 C -0.290 4.290 21 C 0.098 3.902 22 N -0.295 5.295 23 N -0.317 5.317 24 C 0.324 3.676 25 C -0.166 4.166 26 C -0.049 4.049 27 C -0.166 4.166 28 C 0.121 3.879 29 N -0.534 5.534 30 C 0.148 3.852 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.363 0.637 35 H 0.257 0.743 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.237 0.763 41 H 0.150 0.850 42 H 0.180 0.820 43 H 0.182 0.818 44 H 0.194 0.806 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -10.703 35.199 36.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.027 3.973 3 H 0.071 0.929 4 C 0.064 3.936 5 H 0.095 0.905 6 N -0.386 5.386 7 C -0.352 4.352 8 H 0.087 0.913 9 C -0.250 4.250 10 N -0.630 5.630 11 Si 0.772 3.228 12 H -0.206 1.206 13 H -0.225 1.225 14 H -0.184 1.184 15 C -0.189 4.189 16 C -0.029 4.029 17 N -0.335 5.335 18 C 0.398 3.602 19 O -0.468 6.468 20 C -0.304 4.304 21 C -0.091 4.091 22 N -0.112 5.112 23 N -0.090 5.090 24 C 0.100 3.900 25 C -0.188 4.188 26 C -0.075 4.075 27 C -0.186 4.186 28 C -0.037 4.037 29 N -0.247 5.247 30 C 0.000 4.000 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.196 0.804 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.253 0.747 41 H 0.167 0.833 42 H 0.197 0.803 43 H 0.200 0.800 44 H 0.211 0.789 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.680 -10.518 35.595 37.155 hybrid contribution 0.225 1.548 -0.831 1.771 sum 1.906 -8.970 34.765 35.954 Atomic orbital electron populations 1.21964 0.94106 1.02666 1.01797 1.21688 0.94989 0.95766 0.84848 0.92885 1.21418 0.95449 0.90861 0.85826 0.90462 1.42711 1.81462 1.11693 1.02722 1.19012 1.36082 0.97573 0.82544 0.91266 1.25355 1.02867 1.01743 0.95053 1.69851 1.56626 1.36500 0.99999 0.85576 0.78449 0.81362 0.77377 1.20644 1.22504 1.18419 1.23394 0.98872 1.01713 0.94886 1.22915 0.95942 0.88609 0.95450 1.48240 1.52109 1.29359 1.03842 1.17017 0.78100 0.84057 0.80978 1.90745 1.45701 1.26491 1.83883 1.20159 1.18724 0.98891 0.92640 1.25324 0.93450 0.92843 0.97452 1.77242 1.24292 1.12341 0.97352 1.45622 1.46165 1.12737 1.04512 1.18057 0.98662 0.93030 0.80292 1.21835 1.01873 0.97279 0.97852 1.22033 0.94000 1.00208 0.91215 1.22682 0.98697 0.93372 1.03812 1.23199 0.93857 0.99287 0.87323 1.66844 1.20078 1.29400 1.08398 1.23187 0.92423 0.92901 0.91478 0.91164 0.92994 0.91851 0.80419 0.93443 0.88895 0.91790 0.87876 0.87972 0.74714 0.83251 0.80278 0.80026 0.78909 0.78979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.11 71.98 0.66 -3.99 16 2 C 0.13 4.34 3.17 45.34 0.14 4.48 16 3 H 0.05 1.99 7.72 -2.39 -0.02 1.97 16 4 C 0.17 6.05 3.13 46.18 0.14 6.20 16 5 H 0.08 2.71 7.80 -2.39 -0.02 2.69 16 6 N -0.74 -33.22 5.03 -317.32 -1.60 -34.81 16 7 C -0.22 -11.98 10.44 84.03 0.88 -11.11 16 8 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 9 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 10 N -0.98 -61.48 13.97 21.65 0.30 -61.18 16 11 Si 0.94 45.61 27.73 68.60 1.90 47.51 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 14 H -0.26 -11.64 6.52 99.48 0.65 -10.99 16 15 C -0.15 -4.13 6.78 31.99 0.22 -3.91 16 16 C 0.09 1.93 5.09 86.86 0.44 2.37 16 17 N -0.60 -17.05 3.07 -791.92 -2.43 -19.48 16 18 C 0.61 18.78 7.59 86.66 0.66 19.44 16 19 O -0.59 -22.43 16.19 -4.04 -0.07 -22.50 16 20 C -0.29 -7.38 6.04 -20.14 -0.12 -7.50 16 21 C 0.10 1.97 10.27 85.67 0.88 2.85 16 22 N -0.29 -6.48 11.74 -56.22 -0.66 -7.14 16 23 N -0.32 -7.38 3.76 -191.04 -0.72 -8.09 16 24 C 0.32 6.51 7.54 132.77 1.00 7.51 16 25 C -0.17 -2.35 9.69 22.48 0.22 -2.14 16 26 C -0.05 -0.33 10.17 22.45 0.23 -0.10 16 27 C -0.17 -0.84 10.11 22.38 0.23 -0.62 16 28 C 0.12 1.22 11.18 84.66 0.95 2.16 16 29 N -0.53 -9.94 9.82 -192.79 -1.89 -11.84 16 30 C 0.15 3.73 10.87 84.21 0.92 4.65 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.05 1.73 7.10 -2.39 -0.02 1.71 16 33 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.36 16.26 5.43 -92.71 -0.50 15.76 16 35 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.10 1.57 7.70 -2.39 -0.02 1.55 16 39 H 0.10 1.67 5.96 -2.39 -0.01 1.65 16 40 H 0.24 3.08 4.88 -2.91 -0.01 3.06 16 41 H 0.15 2.04 7.67 -2.91 -0.02 2.02 16 42 H 0.18 -0.04 8.06 -2.91 -0.02 -0.06 16 43 H 0.18 -0.46 8.06 -2.91 -0.02 -0.49 16 44 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 45 H 0.19 4.74 8.03 -2.91 -0.02 4.71 16 Total: -1.00 -78.53 374.13 3.21 -75.32 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.47 Total: 24.81 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 7.90 Total: 17.39 kcal Atomic # 7 Polarization: -135.54 SS G_CDS: -7.00 Total: -142.54 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.07 Total: -22.50 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -78.53 3.21 -75.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987108264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.459 kcal (2) G-P(sol) polarization free energy of solvation -78.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds