Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.00019 * 2 1 4 4 C 1.54330 * 109.88084 * 238.91002 * 2 1 3 5 5 H 1.09001 * 110.87240 * 99.95549 * 4 2 1 6 6 N 1.46497 * 110.71889 * 336.75171 * 4 2 1 7 7 C 1.36934 * 120.00304 * 96.41568 * 6 4 2 8 8 H 1.08004 * 119.99525 * 0.02562 * 7 6 4 9 9 C 1.38806 * 120.00604 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00471 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99728 * 359.97438 * 9 7 6 12 12 H 1.48492 * 109.47123 * 90.00438 * 11 9 7 13 13 H 1.48506 * 109.46898 * 210.00139 * 11 9 7 14 14 H 1.48493 * 109.47166 * 330.00241 * 11 9 7 15 15 C 1.55162 * 102.94141 * 218.38893 * 4 2 1 16 16 C 1.54907 * 101.58215 * 35.50274 * 15 4 2 17 17 N 1.47024 * 109.88461 * 121.10291 * 2 1 3 18 18 C 1.34774 * 125.64536 * 298.61753 * 17 2 1 19 19 O 1.21603 * 120.00239 * 353.81668 * 18 17 2 20 20 C 1.47427 * 119.99625 * 173.80881 * 18 17 2 21 21 C 1.41364 * 126.40836 * 352.87479 * 20 18 17 22 22 N 1.30445 * 108.08078 * 179.81655 * 21 20 18 23 23 N 1.39935 * 108.91433 * 0.44064 * 22 21 20 24 24 C 1.39809 * 125.77840 * 179.69363 * 23 22 21 25 25 C 1.38941 * 119.68842 * 0.02585 * 24 23 22 26 26 C 1.38419 * 119.10944 * 179.97438 * 25 24 23 27 27 C 1.38798 * 118.48133 * 0.02562 * 26 25 24 28 28 C 1.38125 * 119.29498 * 359.97438 * 27 26 25 29 29 N 1.31890 * 120.84105 * 359.74282 * 28 27 26 30 30 C 1.34625 * 108.44467 * 359.71625 * 23 22 21 31 31 H 1.08998 * 109.46777 * 305.19568 * 1 2 3 32 32 H 1.08992 * 109.47321 * 65.19830 * 1 2 3 33 33 H 1.08995 * 109.47075 * 185.20247 * 1 2 3 34 34 H 0.97003 * 120.00363 * 276.42032 * 6 4 2 35 35 H 0.97003 * 120.00669 * 180.02562 * 10 9 7 36 36 H 1.08996 * 111.00155 * 277.42568 * 15 4 2 37 37 H 1.08997 * 111.03228 * 153.59152 * 15 4 2 38 38 H 1.09002 * 110.36634 * 204.15380 * 16 15 4 39 39 H 1.08998 * 110.46105 * 81.87638 * 16 15 4 40 40 H 1.07998 * 125.95910 * 359.97301 * 21 20 18 41 41 H 1.08007 * 120.44694 * 0.02562 * 25 24 23 42 42 H 1.08002 * 120.75994 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.35431 * 180.02562 * 27 26 25 44 44 H 1.07995 * 119.58230 * 180.02562 * 28 27 26 45 45 H 1.07998 * 126.30920 * 179.97438 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 2.3524 -0.0481 -2.0223 6 7 1.0471 -1.6854 -1.7476 7 6 0.2213 -1.3141 -2.7749 8 1 0.3133 -0.3313 -3.2133 9 6 -0.7338 -2.2006 -3.2528 10 7 -1.5272 -1.8439 -4.2406 11 14 -0.8923 -3.9006 -2.4950 12 1 -1.8598 -3.8526 -1.3695 13 1 -1.3756 -4.8576 -3.5227 14 1 0.4323 -4.3432 -1.9905 15 6 3.2876 -1.5142 -0.6926 16 6 2.8146 -1.8795 0.7365 17 7 2.0300 -0.7142 1.1838 18 6 1.8039 -0.3647 2.4657 19 8 1.2313 0.6776 2.7198 20 6 2.2506 -1.2461 3.5597 21 6 2.7970 -2.5427 3.4227 22 7 3.0704 -2.9949 4.6153 23 7 2.7086 -2.0287 5.5608 24 6 2.8436 -2.1508 6.9470 25 6 3.3792 -3.3137 7.4865 26 6 3.5078 -3.4216 8.8605 27 6 3.0937 -2.3575 9.6496 28 6 2.5702 -1.2313 9.0450 29 7 2.4651 -1.1555 7.7324 30 6 2.2081 -0.9621 4.9096 31 1 -0.3633 0.5923 0.8398 32 1 -0.3633 0.4310 -0.9328 33 1 -0.3633 -1.0234 0.0932 34 1 0.9647 -2.5681 -1.3540 35 1 -2.1949 -2.4633 -4.5743 36 1 4.1654 -0.8688 -0.6606 37 1 3.4858 -2.4109 -1.2797 38 1 3.6717 -2.0340 1.3920 39 1 2.1892 -2.7720 0.7144 40 1 2.9618 -3.0664 2.4927 41 1 3.6917 -4.1225 6.8424 42 1 3.9203 -4.3136 9.3083 43 1 3.1807 -2.4091 10.7248 44 1 2.2469 -0.4005 9.6545 45 1 1.8406 -0.0521 5.3605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987108265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = 126.746236 kcal Electronic energy + Delta-G solvation = -29025.162496 eV Core-core repulsion = 25046.039032 eV Total energy + Delta-G solvation = -3979.123464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.05540 -40.47590 -39.59014 -37.36570 -34.42205 -33.91211 -33.04433 -31.67561 -30.92894 -30.76837 -30.09372 -28.95171 -25.56654 -24.92636 -24.32214 -23.17682 -23.01025 -21.56659 -21.29399 -19.91229 -19.25066 -18.24656 -17.73531 -16.98246 -16.71499 -16.24089 -15.93309 -15.87592 -15.40174 -14.78650 -14.64851 -14.48071 -14.06121 -13.92721 -13.75917 -13.67724 -13.52410 -13.09586 -12.72777 -12.68006 -12.60521 -12.32756 -11.78356 -11.60816 -11.39653 -10.97548 -10.92320 -10.91258 -10.72239 -10.48944 -10.43664 -10.23265 -10.21536 -10.09848 -9.65679 -9.55615 -9.49620 -8.99240 -8.72352 -8.26695 -7.34667 -5.80885 -3.17403 0.15323 0.63535 1.57125 1.65953 1.95620 3.22425 3.25709 3.33203 3.37130 3.43489 3.53274 3.79968 4.02699 4.33278 4.42744 4.50760 4.55008 4.60321 4.72596 4.84823 4.85881 5.07775 5.15032 5.18471 5.22268 5.30667 5.42659 5.44852 5.53591 5.59290 5.68612 5.73701 5.91401 6.00313 6.04284 6.12565 6.17765 6.37554 6.46660 6.55981 6.60236 6.79007 6.93034 7.01292 7.26176 7.41882 7.85627 7.93560 8.37272 8.47475 9.14390 9.86741 10.05193 11.36926 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002461 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.752453 B =11374.393010 C =11793.709102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.112 3.888 3 H 0.067 0.933 4 C 0.177 3.823 5 H 0.085 0.915 6 N -0.734 5.734 7 C -0.243 4.243 8 H 0.093 0.907 9 C 0.008 3.992 10 N -0.930 5.930 11 Si 0.880 3.120 12 H -0.285 1.285 13 H -0.292 1.292 14 H -0.277 1.277 15 C -0.148 4.148 16 C 0.091 3.909 17 N -0.602 5.602 18 C 0.606 3.394 19 O -0.546 6.546 20 C -0.273 4.273 21 C 0.090 3.910 22 N -0.289 5.289 23 N -0.319 5.319 24 C 0.368 3.632 25 C -0.161 4.161 26 C -0.052 4.052 27 C -0.186 4.186 28 C 0.134 3.866 29 N -0.505 5.505 30 C 0.151 3.849 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.362 0.638 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.209 0.791 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.169 0.831 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.946 -3.068 26.275 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.006 3.994 3 H 0.085 0.915 4 C 0.065 3.935 5 H 0.103 0.897 6 N -0.374 5.374 7 C -0.372 4.372 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.577 5.577 11 Si 0.711 3.289 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 C -0.187 4.187 16 C -0.032 4.032 17 N -0.335 5.335 18 C 0.395 3.605 19 O -0.425 6.425 20 C -0.287 4.287 21 C -0.100 4.100 22 N -0.106 5.106 23 N -0.094 5.094 24 C 0.141 3.859 25 C -0.183 4.183 26 C -0.078 4.078 27 C -0.206 4.206 28 C -0.023 4.023 29 N -0.218 5.218 30 C 0.005 3.995 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.195 0.805 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.225 0.775 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.186 0.814 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 13.618 -2.604 26.609 30.004 hybrid contribution -0.300 -1.450 0.427 1.541 sum 13.317 -4.054 27.035 30.409 Atomic orbital electron populations 1.21786 0.93630 1.02189 1.01626 1.22686 0.96144 0.95779 0.84755 0.91530 1.21220 0.87735 0.91971 0.92616 0.89725 1.42689 1.39917 1.13806 1.41021 1.19022 1.09695 1.00751 1.07779 0.88955 1.24646 0.98224 0.97792 0.98115 1.69688 1.23458 1.35930 1.28654 0.86624 0.77652 0.85916 0.78726 1.21121 1.21807 1.20323 1.23201 0.98925 1.01986 0.94568 1.22612 0.94712 0.89400 0.96498 1.48369 1.51910 1.28350 1.04852 1.16695 0.78817 0.84436 0.80600 1.90765 1.43674 1.24763 1.83286 1.20478 1.16702 0.98044 0.93497 1.24981 0.94489 0.93835 0.96655 1.77268 1.24133 1.12061 0.97166 1.45443 1.47165 1.13195 1.03549 1.17733 0.95836 0.91440 0.80865 1.21669 1.02052 0.98189 0.96380 1.21570 0.95007 0.98832 0.92431 1.22211 1.01604 0.94860 1.01959 1.22579 0.93949 0.97582 0.88227 1.66891 1.19156 1.28974 1.06779 1.23156 0.92589 0.92496 0.91300 0.94058 0.90523 0.92443 0.80531 0.93010 0.90442 0.89452 0.90719 0.91407 0.77480 0.83158 0.83670 0.83864 0.81409 0.78734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.06 37.16 0.30 -2.41 16 2 C 0.11 1.96 3.41 -66.95 -0.23 1.73 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.18 3.05 3.52 -66.09 -0.23 2.82 16 5 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 6 N -0.73 -15.64 3.66 -51.65 -0.19 -15.83 16 7 C -0.24 -6.32 8.99 -15.06 -0.14 -6.46 16 8 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 9 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 10 N -0.93 -28.28 13.97 55.49 0.78 -27.50 16 11 Si 0.88 21.33 27.74 -169.99 -4.71 16.62 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 14 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 15 C -0.15 -1.94 6.69 -24.58 -0.16 -2.11 16 16 C 0.09 1.15 5.02 -2.53 -0.01 1.14 16 17 N -0.60 -9.55 3.07 -164.27 -0.50 -10.05 16 18 C 0.61 10.25 7.58 -12.52 -0.09 10.15 16 19 O -0.55 -10.94 16.25 5.27 0.09 -10.85 16 20 C -0.27 -3.91 6.04 -105.05 -0.63 -4.54 16 21 C 0.09 1.10 10.27 -16.95 -0.17 0.93 16 22 N -0.29 -3.67 11.74 30.88 0.36 -3.30 16 23 N -0.32 -4.07 3.76 -11.74 -0.04 -4.11 16 24 C 0.37 4.08 7.54 -154.37 -1.16 2.92 16 25 C -0.16 -1.38 9.69 -39.25 -0.38 -1.76 16 26 C -0.05 -0.29 10.17 -39.31 -0.40 -0.69 16 27 C -0.19 -0.92 10.11 -39.42 -0.40 -1.32 16 28 C 0.13 0.90 11.18 -17.57 -0.20 0.71 16 29 N -0.50 -5.21 9.82 -12.29 -0.12 -5.33 16 30 C 0.15 2.03 10.87 -16.41 -0.18 1.85 16 31 H 0.04 0.84 7.22 -51.93 -0.37 0.46 16 32 H 0.08 1.66 7.23 -51.93 -0.38 1.29 16 33 H 0.06 1.24 7.58 -51.93 -0.39 0.85 16 34 H 0.36 7.68 5.71 -40.82 -0.23 7.45 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.75 5.98 -51.93 -0.31 0.44 16 39 H 0.07 0.86 7.69 -51.93 -0.40 0.46 16 40 H 0.21 2.04 4.87 -52.49 -0.26 1.78 16 41 H 0.15 1.24 7.67 -52.48 -0.40 0.84 16 42 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 44 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 45 H 0.20 2.46 8.03 -52.49 -0.42 2.04 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -34.28 370.39 -8.67 -42.95 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.71 Total: 8.73 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -4.19 Total: 3.10 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: 0.28 Total: -66.13 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.28 -8.67 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987108265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.697 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds