Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.00019 * 2 1 4 4 C 1.54330 * 109.88084 * 238.91002 * 2 1 3 5 5 H 1.09001 * 110.87240 * 99.95549 * 4 2 1 6 6 N 1.46497 * 110.71889 * 336.75171 * 4 2 1 7 7 C 1.36934 * 120.00304 * 96.41568 * 6 4 2 8 8 H 1.08004 * 119.99525 * 0.02562 * 7 6 4 9 9 C 1.38806 * 120.00604 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00471 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99728 * 359.97438 * 9 7 6 12 12 H 1.48492 * 109.47123 * 90.00438 * 11 9 7 13 13 H 1.48506 * 109.46898 * 210.00139 * 11 9 7 14 14 H 1.48493 * 109.47166 * 330.00241 * 11 9 7 15 15 C 1.55162 * 102.94141 * 218.38893 * 4 2 1 16 16 C 1.54907 * 101.58215 * 35.50274 * 15 4 2 17 17 N 1.47024 * 109.88461 * 121.10291 * 2 1 3 18 18 C 1.34774 * 125.64536 * 298.61753 * 17 2 1 19 19 O 1.21603 * 120.00239 * 353.81668 * 18 17 2 20 20 C 1.47427 * 119.99625 * 173.80881 * 18 17 2 21 21 C 1.41364 * 126.40836 * 352.87479 * 20 18 17 22 22 N 1.30445 * 108.08078 * 179.81655 * 21 20 18 23 23 N 1.39935 * 108.91433 * 0.44064 * 22 21 20 24 24 C 1.39809 * 125.77840 * 179.69363 * 23 22 21 25 25 C 1.38941 * 119.68842 * 0.02585 * 24 23 22 26 26 C 1.38419 * 119.10944 * 179.97438 * 25 24 23 27 27 C 1.38798 * 118.48133 * 0.02562 * 26 25 24 28 28 C 1.38125 * 119.29498 * 359.97438 * 27 26 25 29 29 N 1.31890 * 120.84105 * 359.74282 * 28 27 26 30 30 C 1.34625 * 108.44467 * 359.71625 * 23 22 21 31 31 H 1.08998 * 109.46777 * 305.19568 * 1 2 3 32 32 H 1.08992 * 109.47321 * 65.19830 * 1 2 3 33 33 H 1.08995 * 109.47075 * 185.20247 * 1 2 3 34 34 H 0.97003 * 120.00363 * 276.42032 * 6 4 2 35 35 H 0.97003 * 120.00669 * 180.02562 * 10 9 7 36 36 H 1.08996 * 111.00155 * 277.42568 * 15 4 2 37 37 H 1.08997 * 111.03228 * 153.59152 * 15 4 2 38 38 H 1.09002 * 110.36634 * 204.15380 * 16 15 4 39 39 H 1.08998 * 110.46105 * 81.87638 * 16 15 4 40 40 H 1.07998 * 125.95910 * 359.97301 * 21 20 18 41 41 H 1.08007 * 120.44694 * 0.02562 * 25 24 23 42 42 H 1.08002 * 120.75994 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.35431 * 180.02562 * 27 26 25 44 44 H 1.07995 * 119.58230 * 180.02562 * 28 27 26 45 45 H 1.07998 * 126.30920 * 179.97438 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 2.3524 -0.0481 -2.0223 6 7 1.0471 -1.6854 -1.7476 7 6 0.2213 -1.3141 -2.7749 8 1 0.3133 -0.3313 -3.2133 9 6 -0.7338 -2.2006 -3.2528 10 7 -1.5272 -1.8439 -4.2406 11 14 -0.8923 -3.9006 -2.4950 12 1 -1.8598 -3.8526 -1.3695 13 1 -1.3756 -4.8576 -3.5227 14 1 0.4323 -4.3432 -1.9905 15 6 3.2876 -1.5142 -0.6926 16 6 2.8146 -1.8795 0.7365 17 7 2.0300 -0.7142 1.1838 18 6 1.8039 -0.3647 2.4657 19 8 1.2313 0.6776 2.7198 20 6 2.2506 -1.2461 3.5597 21 6 2.7970 -2.5427 3.4227 22 7 3.0704 -2.9949 4.6153 23 7 2.7086 -2.0287 5.5608 24 6 2.8436 -2.1508 6.9470 25 6 3.3792 -3.3137 7.4865 26 6 3.5078 -3.4216 8.8605 27 6 3.0937 -2.3575 9.6496 28 6 2.5702 -1.2313 9.0450 29 7 2.4651 -1.1555 7.7324 30 6 2.2081 -0.9621 4.9096 31 1 -0.3633 0.5923 0.8398 32 1 -0.3633 0.4310 -0.9328 33 1 -0.3633 -1.0234 0.0932 34 1 0.9647 -2.5681 -1.3540 35 1 -2.1949 -2.4633 -4.5743 36 1 4.1654 -0.8688 -0.6606 37 1 3.4858 -2.4109 -1.2797 38 1 3.6717 -2.0340 1.3920 39 1 2.1892 -2.7720 0.7144 40 1 2.9618 -3.0664 2.4927 41 1 3.6917 -4.1225 6.8424 42 1 3.9203 -4.3136 9.3083 43 1 3.1807 -2.4091 10.7248 44 1 2.2469 -0.4005 9.6545 45 1 1.8406 -0.0521 5.3605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987108265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = 104.461017 kcal Electronic energy + Delta-G solvation = -29026.128856 eV Core-core repulsion = 25046.039032 eV Total energy + Delta-G solvation = -3980.089824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.96160 -41.28794 -40.70474 -38.76717 -35.89717 -34.92666 -33.67356 -33.41126 -32.26675 -31.77026 -31.27352 -30.17470 -27.01624 -25.87509 -25.03718 -24.75957 -24.19634 -22.53073 -22.24092 -21.21831 -20.38608 -19.70700 -19.24117 -17.72088 -17.54491 -17.41921 -16.90371 -16.68933 -16.38273 -16.24548 -15.88374 -15.65933 -15.25052 -15.17489 -15.02840 -14.72324 -14.46976 -14.30837 -14.11303 -14.01674 -13.68855 -13.47992 -13.07324 -13.04755 -12.86758 -12.40771 -12.39850 -12.32937 -11.97696 -11.85010 -11.70437 -11.66362 -11.52048 -11.03609 -11.01324 -10.90385 -10.78367 -10.43244 -9.66015 -9.43186 -9.27695 -7.95463 -5.28210 -0.54909 0.13588 0.66120 0.84399 1.01776 1.39630 1.44195 1.50594 2.00687 2.30682 2.53303 2.70202 3.07686 3.30382 3.34652 3.59043 3.60742 3.70600 3.72887 3.87831 3.97740 4.00447 4.08469 4.20410 4.23862 4.33321 4.38714 4.44949 4.52005 4.59616 4.68451 4.72416 4.84288 4.94415 5.00225 5.09603 5.14388 5.18691 5.25663 5.27935 5.40433 5.50127 5.52654 5.80053 5.85914 6.10632 6.27524 6.60105 6.75636 7.13968 7.18190 7.88679 8.07635 9.25833 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002461 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.752453 B =11374.393010 C =11793.709102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.117 3.883 3 H 0.067 0.933 4 C 0.168 3.832 5 H 0.081 0.919 6 N -0.733 5.733 7 C -0.211 4.211 8 H 0.061 0.939 9 C -0.064 4.064 10 N -0.985 5.985 11 Si 0.943 3.057 12 H -0.292 1.292 13 H -0.302 1.302 14 H -0.238 1.238 15 C -0.131 4.131 16 C 0.085 3.915 17 N -0.601 5.601 18 C 0.603 3.397 19 O -0.589 6.589 20 C -0.290 4.290 21 C 0.096 3.904 22 N -0.294 5.294 23 N -0.316 5.316 24 C 0.324 3.676 25 C -0.167 4.167 26 C -0.048 4.048 27 C -0.165 4.165 28 C 0.121 3.879 29 N -0.534 5.534 30 C 0.147 3.853 31 H 0.031 0.969 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.366 0.634 35 H 0.254 0.746 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.234 0.766 41 H 0.149 0.851 42 H 0.180 0.820 43 H 0.183 0.817 44 H 0.195 0.805 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.839 -5.442 29.813 34.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.011 3.989 3 H 0.085 0.915 4 C 0.058 3.942 5 H 0.099 0.901 6 N -0.374 5.374 7 C -0.342 4.342 8 H 0.079 0.921 9 C -0.255 4.255 10 N -0.636 5.636 11 Si 0.772 3.228 12 H -0.219 1.219 13 H -0.230 1.230 14 H -0.162 1.162 15 C -0.170 4.170 16 C -0.036 4.036 17 N -0.333 5.333 18 C 0.394 3.606 19 O -0.471 6.471 20 C -0.304 4.304 21 C -0.093 4.093 22 N -0.111 5.111 23 N -0.090 5.090 24 C 0.099 3.901 25 C -0.189 4.189 26 C -0.074 4.074 27 C -0.185 4.185 28 C -0.037 4.037 29 N -0.247 5.247 30 C -0.001 4.001 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.200 0.800 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.250 0.750 41 H 0.167 0.833 42 H 0.198 0.802 43 H 0.200 0.800 44 H 0.211 0.789 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 16.602 -5.008 30.210 34.833 hybrid contribution -1.154 -0.575 -0.428 1.359 sum 15.448 -5.583 29.782 34.012 Atomic orbital electron populations 1.21615 0.95975 1.00585 0.99827 1.22420 0.94076 0.96357 0.86006 0.91488 1.21417 0.88607 0.91981 0.92206 0.90086 1.42611 1.40162 1.14660 1.39952 1.18942 1.09028 0.98950 1.07305 0.92104 1.25392 0.98722 1.02115 0.99301 1.69873 1.25049 1.37380 1.31305 0.85581 0.79092 0.80983 0.77181 1.21880 1.22966 1.16230 1.23149 0.97279 1.02304 0.94242 1.22905 0.95657 0.88223 0.96849 1.48351 1.51883 1.29050 1.04013 1.17058 0.78105 0.84181 0.81262 1.90735 1.45684 1.26717 1.83977 1.20235 1.18566 0.98814 0.92817 1.25272 0.93763 0.92839 0.97420 1.77223 1.24321 1.12331 0.97264 1.45620 1.46321 1.12581 1.04484 1.18061 0.98718 0.93032 0.80243 1.21833 1.01915 0.97262 0.97892 1.22034 0.94006 1.00231 0.91152 1.22683 0.98662 0.93350 1.03829 1.23208 0.93838 0.99318 0.87289 1.66848 1.19973 1.29494 1.08406 1.23179 0.92553 0.92910 0.91455 0.94944 0.92993 0.93961 0.79986 0.93708 0.87847 0.88091 0.87210 0.90601 0.75038 0.83310 0.80232 0.79958 0.78863 0.78977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 8.06 71.98 0.58 -4.48 16 2 C 0.12 4.08 3.41 45.34 0.15 4.23 16 3 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 4 C 0.17 5.57 3.52 46.18 0.16 5.73 16 5 H 0.08 2.77 8.06 -2.39 -0.02 2.75 16 6 N -0.73 -30.44 3.66 -317.32 -1.16 -31.60 16 7 C -0.21 -11.18 8.99 84.03 0.76 -10.42 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 9 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 10 N -0.99 -62.19 13.97 21.65 0.30 -61.88 16 11 Si 0.94 44.08 27.74 68.60 1.90 45.99 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 14 H -0.24 -9.51 6.52 99.48 0.65 -8.86 16 15 C -0.13 -2.95 6.69 31.99 0.21 -2.74 16 16 C 0.09 1.86 5.02 86.85 0.44 2.30 16 17 N -0.60 -18.23 3.07 -791.88 -2.43 -20.66 16 18 C 0.60 20.26 7.58 86.66 0.66 20.91 16 19 O -0.59 -24.24 16.25 -4.04 -0.07 -24.31 16 20 C -0.29 -8.09 6.04 -20.14 -0.12 -8.21 16 21 C 0.10 2.15 10.27 85.67 0.88 3.03 16 22 N -0.29 -7.01 11.74 -56.23 -0.66 -7.67 16 23 N -0.32 -7.90 3.76 -191.05 -0.72 -8.62 16 24 C 0.32 6.94 7.54 132.76 1.00 7.94 16 25 C -0.17 -2.56 9.69 22.48 0.22 -2.34 16 26 C -0.05 -0.37 10.17 22.45 0.23 -0.15 16 27 C -0.17 -0.98 10.11 22.38 0.23 -0.75 16 28 C 0.12 1.33 11.18 84.66 0.95 2.28 16 29 N -0.53 -10.58 9.82 -192.81 -1.89 -12.47 16 30 C 0.15 4.00 10.87 84.21 0.92 4.91 16 31 H 0.03 1.37 7.22 -2.39 -0.02 1.35 16 32 H 0.05 2.37 7.23 -2.39 -0.02 2.35 16 33 H 0.04 1.85 7.58 -2.39 -0.02 1.83 16 34 H 0.37 14.64 5.71 -92.71 -0.53 14.11 16 35 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.11 1.71 5.98 -2.39 -0.01 1.69 16 39 H 0.08 1.59 7.69 -2.39 -0.02 1.58 16 40 H 0.23 3.70 4.87 -2.91 -0.01 3.68 16 41 H 0.15 2.22 7.67 -2.91 -0.02 2.20 16 42 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 43 H 0.18 -0.34 8.06 -2.91 -0.02 -0.36 16 44 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 45 H 0.19 5.11 8.03 -2.91 -0.02 5.09 16 Total: -1.00 -79.80 370.39 3.44 -76.36 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.45 Total: 25.80 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.72 Total: 19.06 kcal Atomic # 7 Polarization: -136.34 SS G_CDS: -6.56 Total: -142.90 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.07 Total: -24.31 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.90 Total: 45.99 kcal Total: -79.80 3.44 -76.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987108265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.819 kcal (2) G-P(sol) polarization free energy of solvation -79.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds