Wall clock time and date at job start Sat Apr 11 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.87321 * 2 1 4 4 C 1.54323 * 109.88369 * 238.98249 * 2 1 3 5 5 H 1.08997 * 110.71815 * 100.02898 * 4 2 1 6 6 N 1.46494 * 110.72186 * 336.75094 * 4 2 1 7 7 C 1.36937 * 120.00363 * 155.00119 * 6 4 2 8 8 H 1.08004 * 119.99542 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00318 * 180.02562 * 7 6 4 10 10 N 1.31614 * 120.00174 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99913 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46978 * 90.00470 * 11 9 7 13 13 H 1.48506 * 109.47193 * 210.00493 * 11 9 7 14 14 H 1.48494 * 109.47468 * 330.00452 * 11 9 7 15 15 C 1.55407 * 102.82455 * 218.48099 * 4 2 1 16 16 C 1.54899 * 101.66726 * 35.34040 * 15 4 2 17 17 N 1.47029 * 109.88315 * 121.01043 * 2 1 3 18 18 C 1.34775 * 125.64959 * 298.32957 * 17 2 1 19 19 O 1.21578 * 119.99550 * 181.68471 * 18 17 2 20 20 C 1.47666 * 119.99964 * 1.68446 * 18 17 2 21 21 C 1.39701 * 120.08108 * 350.64497 * 20 18 17 22 22 C 1.37739 * 119.91749 * 179.76422 * 21 20 18 23 23 C 1.39025 * 120.07915 * 0.52010 * 22 21 20 24 24 N 1.39930 * 119.91645 * 179.76273 * 23 22 21 25 25 C 1.36354 * 127.11476 * 179.66214 * 24 23 22 26 26 N 1.30499 * 107.19887 * 179.87174 * 25 24 23 27 27 N 1.28540 * 109.91591 * 0.39648 * 26 25 24 28 28 C 1.30499 * 109.91928 * 359.74906 * 27 26 25 29 29 C 1.39028 * 120.16380 * 359.73407 * 23 22 21 30 30 C 1.37735 * 120.07817 * 0.02562 * 29 23 22 31 31 H 1.08993 * 109.47399 * 289.75546 * 1 2 3 32 32 H 1.09007 * 109.46854 * 169.76077 * 1 2 3 33 33 H 1.08996 * 109.47164 * 49.76429 * 1 2 3 34 34 H 0.97007 * 120.00136 * 335.00124 * 6 4 2 35 35 H 0.96998 * 120.00071 * 179.97438 * 10 9 7 36 36 H 1.08998 * 110.88814 * 277.26435 * 15 4 2 37 37 H 1.09002 * 111.03204 * 153.47394 * 15 4 2 38 38 H 1.09007 * 110.36423 * 204.23547 * 16 15 4 39 39 H 1.08996 * 110.37523 * 81.91322 * 16 15 4 40 40 H 1.07998 * 120.04274 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.96311 * 180.25316 * 22 21 20 42 42 H 1.08004 * 126.39790 * 0.02562 * 25 24 23 43 43 H 1.08004 * 126.39775 * 180.02562 * 28 27 26 44 44 H 1.07998 * 119.95680 * 180.02562 * 29 23 22 45 45 H 1.08000 * 120.03699 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.3530 -0.0432 -2.0200 6 7 1.0473 -1.6831 -1.7497 7 6 1.0608 -2.0576 -3.0668 8 1 1.8146 -1.6637 -3.7325 9 6 0.1057 -2.9435 -3.5464 10 7 0.1190 -3.3038 -4.8122 11 14 -1.1975 -3.6253 -2.3948 12 1 -2.3828 -2.7307 -2.4036 13 1 -1.5977 -4.9818 -2.8480 14 1 -0.6481 -3.7057 -1.0176 15 6 3.2877 -1.5152 -0.6901 16 6 2.8145 -1.8783 0.7395 17 7 2.0301 -0.7123 1.1850 18 6 1.8085 -0.3577 2.4663 19 8 2.2988 -1.0066 3.3700 20 6 0.9702 0.8188 2.7723 21 6 0.5678 1.6777 1.7467 22 6 -0.2181 2.7714 2.0353 23 6 -0.6019 3.0271 3.3469 24 7 -1.3962 4.1420 3.6369 25 6 -1.8596 4.5263 4.8603 26 7 -2.5553 5.6163 4.6846 27 7 -2.5650 5.9334 3.4389 28 6 -1.8717 5.0657 2.7538 29 6 -0.1988 2.1775 4.3709 30 6 0.5830 1.0792 4.0891 31 1 -0.3634 0.3473 0.9671 32 1 -0.3633 -1.0114 -0.1827 33 1 -0.3633 0.6638 -0.7845 34 1 0.3705 -2.0373 -1.1517 35 1 -0.5481 -3.9231 -5.1472 36 1 4.1654 -0.8697 -0.6590 37 1 3.4853 -2.4128 -1.2761 38 1 3.6717 -2.0318 1.3952 39 1 2.1887 -2.7704 0.7169 40 1 0.8689 1.4820 0.7282 41 1 -0.5331 3.4336 1.2424 42 1 -1.6818 4.0238 5.7997 43 1 -1.7053 5.0773 1.6867 44 1 -0.4992 2.3791 5.3885 45 1 0.8954 0.4194 4.8851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987178279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:54 Heat of formation + Delta-G solvation = 156.551000 kcal Electronic energy + Delta-G solvation = -29543.402417 eV Core-core repulsion = 25565.571384 eV Total energy + Delta-G solvation = -3977.831033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.66463 -41.21822 -39.20820 -37.91234 -35.50500 -34.30527 -32.88990 -31.78193 -31.49556 -30.77054 -29.89724 -29.43358 -26.06970 -25.06970 -24.16378 -23.50230 -23.03152 -21.93228 -21.50211 -20.13131 -19.71358 -19.08333 -18.11884 -17.53298 -16.60921 -16.40987 -16.16357 -15.82987 -15.52770 -15.11555 -14.90377 -14.67845 -14.35786 -14.28995 -13.86067 -13.80126 -13.48216 -13.11336 -13.06162 -12.80276 -12.65403 -12.19297 -11.90726 -11.68211 -11.65419 -11.44054 -11.42334 -11.05684 -10.95525 -10.92566 -10.90612 -10.56161 -10.29775 -10.00892 -9.93985 -9.73695 -9.44159 -9.13254 -8.99134 -8.64478 -7.49971 -5.95128 -3.33162 -0.00961 0.76711 1.48183 1.87099 2.42894 2.59805 2.86223 3.22448 3.24473 3.32990 3.41344 3.89070 4.01087 4.11662 4.18576 4.29622 4.41393 4.52370 4.57332 4.72064 4.74156 4.86691 4.87647 5.09621 5.10382 5.19613 5.24963 5.34897 5.39902 5.46004 5.51907 5.55513 5.64041 5.72118 5.76578 5.79821 5.90322 5.99034 6.06166 6.17263 6.29100 6.33175 6.40451 6.50019 6.56629 7.45300 7.78792 8.02848 8.19805 8.23088 8.99183 9.71416 9.88462 11.22479 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.002996 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.559522 B = 9342.310890 C =10498.791815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.100 3.900 3 H 0.091 0.909 4 C 0.181 3.819 5 H 0.085 0.915 6 N -0.737 5.737 7 C -0.252 4.252 8 H 0.094 0.906 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.877 3.123 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.278 1.278 15 C -0.160 4.160 16 C 0.111 3.889 17 N -0.601 5.601 18 C 0.571 3.429 19 O -0.543 6.543 20 C -0.137 4.137 21 C -0.081 4.081 22 C -0.146 4.146 23 C 0.152 3.848 24 N -0.430 5.430 25 C 0.160 3.840 26 N -0.291 5.291 27 N -0.291 5.291 28 C 0.163 3.837 29 C -0.145 4.145 30 C -0.030 4.030 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.365 0.635 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.185 0.815 41 H 0.140 0.860 42 H 0.223 0.777 43 H 0.225 0.775 44 H 0.138 0.862 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 12.256 15.921 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.004 4.004 3 H 0.108 0.892 4 C 0.069 3.931 5 H 0.102 0.898 6 N -0.381 5.381 7 C -0.382 4.382 8 H 0.111 0.889 9 C -0.184 4.184 10 N -0.573 5.573 11 Si 0.707 3.293 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.205 1.205 15 C -0.201 4.201 16 C -0.011 4.011 17 N -0.334 5.334 18 C 0.361 3.639 19 O -0.422 6.422 20 C -0.140 4.140 21 C -0.099 4.099 22 C -0.166 4.166 23 C 0.058 3.942 24 N -0.117 5.117 25 C -0.126 4.126 26 N -0.128 5.128 27 N -0.128 5.128 28 C -0.123 4.123 29 C -0.165 4.165 30 C -0.049 4.049 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.201 0.799 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.201 0.799 41 H 0.158 0.842 42 H 0.239 0.761 43 H 0.241 0.759 44 H 0.156 0.844 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.178 13.165 16.523 21.160 hybrid contribution -0.289 -1.847 0.437 1.920 sum 0.889 11.318 16.960 20.410 Atomic orbital electron populations 1.22870 0.94503 1.04665 1.02237 1.22508 0.94971 0.96213 0.86689 0.89190 1.21185 0.88688 0.91565 0.91646 0.89765 1.42972 1.33223 1.52918 1.09026 1.19033 1.12537 1.22348 0.84258 0.88856 1.24645 0.98730 0.99375 0.95652 1.69677 1.37239 1.37501 1.12932 0.86699 0.82873 0.79128 0.80606 1.20850 1.21488 1.20460 1.23587 0.99043 1.02821 0.94656 1.22268 0.95022 0.87920 0.95894 1.48530 1.51622 1.28685 1.04523 1.17730 0.80686 0.84035 0.81496 1.90777 1.51674 1.54878 1.44852 1.20050 1.02191 0.97385 0.94396 1.23035 0.93217 0.91041 1.02565 1.20843 1.01876 0.99869 0.94011 1.17987 0.94062 0.86859 0.95263 1.44330 1.37908 1.20605 1.08876 1.26821 0.98444 0.96608 0.90728 1.74256 1.17532 1.11078 1.09959 1.74263 1.17678 1.22496 0.98368 1.26872 0.97948 0.88026 0.99430 1.20748 1.01702 0.95644 0.98436 1.21134 0.92824 0.94937 0.96047 0.91261 0.90859 0.90012 0.79894 0.92810 0.91449 0.88791 0.90807 0.91243 0.79928 0.84238 0.76087 0.75916 0.84442 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 7.47 37.16 0.28 -2.00 16 2 C 0.10 1.21 2.69 -66.95 -0.18 1.03 16 3 H 0.09 0.84 6.21 -51.93 -0.32 0.52 16 4 C 0.18 2.73 3.50 -65.96 -0.23 2.50 16 5 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 6 N -0.74 -14.60 4.35 -51.52 -0.22 -14.83 16 7 C -0.25 -6.25 10.44 -15.06 -0.16 -6.41 16 8 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 9 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 10 N -0.93 -27.15 13.97 55.49 0.78 -26.38 16 11 Si 0.88 20.48 27.73 -169.99 -4.71 15.77 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 15 C -0.16 -2.23 6.77 -24.45 -0.17 -2.40 16 16 C 0.11 1.57 6.90 -2.53 -0.02 1.56 16 17 N -0.60 -8.09 3.06 -165.95 -0.51 -8.60 16 18 C 0.57 7.94 7.65 -12.41 -0.09 7.85 16 19 O -0.54 -9.13 16.62 5.30 0.09 -9.04 16 20 C -0.14 -1.47 5.33 -104.95 -0.56 -2.03 16 21 C -0.08 -0.71 6.17 -39.22 -0.24 -0.95 16 22 C -0.15 -1.08 9.47 -39.47 -0.37 -1.45 16 23 C 0.15 1.18 6.65 -83.58 -0.56 0.62 16 24 N -0.43 -3.53 2.99 -63.17 -0.19 -3.72 16 25 C 0.16 1.34 12.06 -89.17 -1.08 0.26 16 26 N -0.29 -3.44 12.19 29.85 0.36 -3.08 16 27 N -0.29 -3.47 12.19 29.85 0.36 -3.11 16 28 C 0.16 1.40 12.06 -89.17 -1.08 0.32 16 29 C -0.15 -1.06 9.47 -39.47 -0.37 -1.44 16 30 C -0.03 -0.28 9.58 -39.22 -0.38 -0.65 16 31 H 0.07 0.76 4.18 -52.27 -0.22 0.54 16 32 H 0.07 1.13 5.63 -51.92 -0.29 0.83 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.36 7.35 3.36 -40.82 -0.14 7.21 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.07 1.01 8.02 -51.93 -0.42 0.60 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.18 1.54 2.18 -54.89 -0.12 1.42 16 41 H 0.14 0.68 6.84 -52.49 -0.36 0.33 16 42 H 0.22 0.92 7.17 -52.48 -0.38 0.54 16 43 H 0.22 1.02 7.17 -52.48 -0.38 0.65 16 44 H 0.14 0.63 6.84 -52.49 -0.36 0.27 16 45 H 0.15 1.31 7.67 -52.49 -0.40 0.91 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -33.67 357.85 -9.03 -42.70 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.08 Total: 7.83 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -5.30 Total: -2.93 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.58 Total: -59.71 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.71 Total: 15.77 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.67 -9.03 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987178279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.248 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds