Wall clock time and date at job start Sat Apr 11 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.87585 * 2 1 4 4 C 1.54370 * 110.03163 * 121.06780 * 2 1 3 5 5 H 1.08997 * 110.75909 * 260.01599 * 4 2 1 6 6 N 1.46501 * 110.70344 * 23.30503 * 4 2 1 7 7 C 1.36941 * 119.99744 * 236.26207 * 6 4 2 8 8 H 1.08008 * 119.99921 * 0.02562 * 7 6 4 9 9 C 1.38812 * 119.99936 * 179.97438 * 7 6 4 10 10 N 1.31615 * 119.99708 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00207 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47100 * 89.99318 * 11 9 7 13 13 H 1.48495 * 109.47590 * 210.00189 * 11 9 7 14 14 H 1.48510 * 109.47026 * 330.00023 * 11 9 7 15 15 C 1.55158 * 102.92216 * 141.64573 * 4 2 1 16 16 C 1.54903 * 101.61638 * 324.54810 * 15 4 2 17 17 N 1.47025 * 109.88127 * 238.98391 * 2 1 3 18 18 C 1.34774 * 125.64425 * 61.52713 * 17 2 1 19 19 O 1.21578 * 119.99775 * 172.76725 * 18 17 2 20 20 C 1.47671 * 120.00573 * 352.75864 * 18 17 2 21 21 C 1.39704 * 120.07701 * 17.19875 * 20 18 17 22 22 C 1.37739 * 119.91706 * 179.79120 * 21 20 18 23 23 C 1.39019 * 120.07677 * 0.46501 * 22 21 20 24 24 N 1.39937 * 119.91348 * 179.76679 * 23 22 21 25 25 C 1.36353 * 127.11002 * 179.70943 * 24 23 22 26 26 N 1.30512 * 107.18991 * 179.87044 * 25 24 23 27 27 N 1.28538 * 109.92055 * 0.40185 * 26 25 24 28 28 C 1.30504 * 109.91778 * 359.74339 * 27 26 25 29 29 C 1.39017 * 120.16804 * 359.79126 * 23 22 21 30 30 C 1.37742 * 120.08036 * 359.97438 * 29 23 22 31 31 H 1.09002 * 109.47104 * 203.83558 * 1 2 3 32 32 H 1.09004 * 109.47180 * 323.83053 * 1 2 3 33 33 H 1.08997 * 109.47581 * 83.82850 * 1 2 3 34 34 H 0.96998 * 120.00579 * 56.26773 * 6 4 2 35 35 H 0.97008 * 120.00145 * 179.97438 * 10 9 7 36 36 H 1.08998 * 111.00530 * 206.44885 * 15 4 2 37 37 H 1.09009 * 110.99845 * 82.64072 * 15 4 2 38 38 H 1.09003 * 110.36982 * 155.82611 * 16 15 4 39 39 H 1.09003 * 110.36869 * 278.03872 * 16 15 4 40 40 H 1.07996 * 120.03929 * 359.97438 * 21 20 18 41 41 H 1.07995 * 119.95604 * 180.23085 * 22 21 20 42 42 H 1.08000 * 126.40697 * 359.97438 * 25 24 23 43 43 H 1.08004 * 126.39899 * 180.02562 * 28 27 26 44 44 H 1.07997 * 119.96719 * 179.97438 * 29 23 22 45 45 H 1.07998 * 120.04243 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0587 -0.7484 1.2423 5 1 2.3571 -0.0447 2.0193 6 7 1.0537 -1.6864 1.7486 7 6 0.6294 -1.5999 3.0477 8 1 1.0354 -0.8399 3.6989 9 6 -0.3233 -2.4883 3.5273 10 7 -0.7314 -2.4048 4.7758 11 14 -1.0260 -3.8023 2.4008 12 1 -0.1953 -5.0297 2.4934 13 1 -2.4182 -4.1145 2.8125 14 1 -1.0232 -3.3072 1.0007 15 6 3.2917 -1.5108 0.6893 16 6 2.8175 -1.8763 -0.7394 17 7 2.0299 -0.7124 -1.1849 18 6 1.8060 -0.3594 -2.4662 19 8 2.3761 -0.9446 -3.3665 20 6 0.8680 0.7381 -2.7767 21 6 0.4902 1.6396 -1.7785 22 6 -0.3816 2.6646 -2.0728 23 6 -0.8928 2.7969 -3.3588 24 7 -1.7820 3.8366 -3.6528 25 6 -2.3643 4.1056 -4.8560 26 7 -3.1219 5.1556 -4.6917 27 7 -3.0463 5.5642 -3.4754 28 6 -2.2408 4.7936 -2.7968 29 6 -0.5233 1.8985 -4.3533 30 6 0.3518 0.8739 -4.0676 31 1 -0.3633 -0.9400 0.4153 32 1 -0.3634 0.8296 0.6065 33 1 -0.3634 0.1105 -1.0216 34 1 0.6888 -2.3688 1.1637 35 1 -1.3975 -3.0254 5.1109 36 1 3.4921 -2.4074 1.2758 37 1 4.1685 -0.8640 0.6565 38 1 3.6741 -2.0285 -1.3961 39 1 2.1952 -2.7709 -0.7153 40 1 0.8835 1.5347 -0.7782 41 1 -0.6711 3.3641 -1.3026 42 1 -2.2260 3.5522 -5.7731 43 1 -1.9856 4.8949 -1.7522 44 1 -0.9227 2.0040 -5.3511 45 1 0.6381 0.1761 -4.8406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987178283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:59 Heat of formation + Delta-G solvation = 146.752873 kcal Electronic energy + Delta-G solvation = -29620.158694 eV Core-core repulsion = 25641.902783 eV Total energy + Delta-G solvation = -3978.255911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.61161 -41.11099 -39.16180 -37.85253 -35.43808 -34.31047 -32.77876 -31.76412 -31.42171 -30.72469 -29.79589 -29.44974 -25.98989 -25.01279 -24.07552 -23.43184 -22.99038 -21.88166 -21.45510 -20.25304 -19.64111 -19.00825 -18.07661 -17.44147 -16.55730 -16.40213 -16.11500 -15.73743 -15.45871 -15.01268 -14.91970 -14.61318 -14.34645 -14.23486 -13.89117 -13.77867 -13.46023 -13.15180 -12.94095 -12.74297 -12.65150 -12.12907 -11.87671 -11.75433 -11.61812 -11.45101 -11.22868 -10.99310 -10.92070 -10.87627 -10.81167 -10.57537 -10.31078 -10.01160 -9.88904 -9.75897 -9.40384 -9.17459 -8.91664 -8.59152 -7.53029 -5.97747 -3.36049 0.05609 0.84105 1.53926 1.92522 2.47627 2.62859 2.90994 3.21044 3.24768 3.32491 3.45241 3.94862 4.06685 4.17535 4.25125 4.35435 4.39374 4.58715 4.70225 4.78827 4.80744 4.89768 4.93894 5.13480 5.16510 5.28133 5.33686 5.38252 5.42608 5.49723 5.57271 5.62709 5.70546 5.76219 5.84585 5.89159 5.94220 6.04257 6.12022 6.14187 6.30147 6.38993 6.41102 6.55438 6.72940 7.50389 7.74738 8.05891 8.20241 8.24630 8.95526 9.67974 9.85088 11.19576 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012220 B = 0.003184 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.716449 B = 8792.726968 C =10140.913091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.091 3.909 3 H 0.082 0.918 4 C 0.179 3.821 5 H 0.095 0.905 6 N -0.729 5.729 7 C -0.256 4.256 8 H 0.094 0.906 9 C 0.014 3.986 10 N -0.926 5.926 11 Si 0.878 3.122 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.277 1.277 15 C -0.157 4.157 16 C 0.108 3.892 17 N -0.601 5.601 18 C 0.572 3.428 19 O -0.545 6.545 20 C -0.136 4.136 21 C -0.068 4.068 22 C -0.146 4.146 23 C 0.151 3.849 24 N -0.430 5.430 25 C 0.160 3.840 26 N -0.292 5.292 27 N -0.292 5.292 28 C 0.164 3.836 29 C -0.146 4.146 30 C -0.032 4.032 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.364 0.636 35 H 0.262 0.738 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.178 0.822 41 H 0.139 0.861 42 H 0.223 0.777 43 H 0.225 0.775 44 H 0.137 0.863 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 9.026 -15.534 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.014 4.014 3 H 0.099 0.901 4 C 0.066 3.934 5 H 0.113 0.887 6 N -0.369 5.369 7 C -0.385 4.385 8 H 0.112 0.888 9 C -0.183 4.183 10 N -0.572 5.572 11 Si 0.708 3.292 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.204 1.204 15 C -0.197 4.197 16 C -0.014 4.014 17 N -0.333 5.333 18 C 0.361 3.639 19 O -0.424 6.424 20 C -0.139 4.139 21 C -0.086 4.086 22 C -0.166 4.166 23 C 0.058 3.942 24 N -0.117 5.117 25 C -0.126 4.126 26 N -0.129 5.129 27 N -0.128 5.128 28 C -0.122 4.122 29 C -0.165 4.165 30 C -0.052 4.052 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.198 0.802 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.194 0.806 41 H 0.157 0.843 42 H 0.239 0.761 43 H 0.241 0.759 44 H 0.155 0.845 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.174 9.968 -16.113 19.211 hybrid contribution 0.164 -2.116 -0.426 2.165 sum 3.338 7.852 -16.539 18.610 Atomic orbital electron populations 1.22764 0.93983 1.05859 1.01037 1.22881 0.95630 0.95957 0.86963 0.90110 1.21193 0.88153 0.91838 0.92216 0.88745 1.42795 1.46749 1.36113 1.11256 1.19079 1.18932 1.14621 0.85876 0.88790 1.24658 0.98994 0.98838 0.95831 1.69680 1.34058 1.39445 1.13985 0.86686 0.79065 0.83025 0.80391 1.20873 1.21537 1.20370 1.23460 0.99076 1.02483 0.94681 1.22246 0.95142 0.88066 0.95953 1.48490 1.51462 1.28666 1.04703 1.17741 0.81584 0.83020 0.81511 1.90770 1.50554 1.55795 1.45287 1.20039 1.01049 0.98014 0.94816 1.22774 0.93632 0.90712 1.01460 1.20827 1.00581 1.00805 0.94353 1.17965 0.92293 0.88492 0.95476 1.44326 1.34071 1.22628 1.10637 1.26811 0.96170 0.98593 0.91074 1.74253 1.18470 1.09606 1.10548 1.74261 1.16506 1.22992 0.99091 1.26874 0.97528 0.88085 0.99747 1.20726 1.01291 0.95761 0.98770 1.21101 0.92635 0.95730 0.95689 0.89181 0.91181 0.92472 0.80180 0.92775 0.89111 0.90923 0.90671 0.91537 0.80590 0.84276 0.76112 0.75918 0.84494 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 7.52 37.15 0.28 -2.16 16 2 C 0.09 1.15 2.72 -66.93 -0.18 0.97 16 3 H 0.08 0.83 6.25 -51.93 -0.32 0.50 16 4 C 0.18 2.66 3.59 -66.07 -0.24 2.43 16 5 H 0.09 1.39 7.85 -51.93 -0.41 0.98 16 6 N -0.73 -14.17 3.14 -51.62 -0.16 -14.33 16 7 C -0.26 -6.20 10.42 -15.06 -0.16 -6.36 16 8 H 0.09 2.44 7.91 -52.48 -0.42 2.03 16 9 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 10 N -0.93 -26.78 13.97 55.49 0.78 -26.00 16 11 Si 0.88 20.27 27.74 -169.99 -4.71 15.55 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.00 6.52 56.52 0.37 -5.64 16 15 C -0.16 -2.03 6.77 -24.58 -0.17 -2.19 16 16 C 0.11 1.46 6.92 -2.53 -0.02 1.44 16 17 N -0.60 -8.14 3.07 -164.16 -0.50 -8.64 16 18 C 0.57 8.11 7.58 -12.41 -0.09 8.01 16 19 O -0.54 -9.21 16.70 5.30 0.09 -9.12 16 20 C -0.14 -1.54 5.00 -104.95 -0.52 -2.07 16 21 C -0.07 -0.65 6.28 -39.22 -0.25 -0.90 16 22 C -0.15 -1.20 9.46 -39.47 -0.37 -1.57 16 23 C 0.15 1.28 6.65 -83.58 -0.56 0.73 16 24 N -0.43 -3.80 2.99 -63.17 -0.19 -3.99 16 25 C 0.16 1.42 12.06 -89.16 -1.08 0.35 16 26 N -0.29 -3.60 12.19 29.85 0.36 -3.23 16 27 N -0.29 -3.64 12.19 29.85 0.36 -3.28 16 28 C 0.16 1.51 12.06 -89.17 -1.08 0.44 16 29 C -0.15 -1.15 9.46 -39.47 -0.37 -1.53 16 30 C -0.03 -0.31 9.58 -39.22 -0.38 -0.69 16 31 H 0.09 1.56 5.79 -51.93 -0.30 1.26 16 32 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 33 H 0.06 0.73 4.50 -51.93 -0.23 0.49 16 34 H 0.36 7.28 5.15 -40.82 -0.21 7.07 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.07 0.99 7.97 -51.93 -0.41 0.57 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.18 1.64 2.51 -52.49 -0.13 1.51 16 41 H 0.14 0.81 6.84 -52.49 -0.36 0.46 16 42 H 0.22 1.03 7.17 -52.49 -0.38 0.66 16 43 H 0.22 1.19 7.17 -52.48 -0.38 0.81 16 44 H 0.14 0.71 6.84 -52.49 -0.36 0.35 16 45 H 0.15 1.36 7.75 -52.49 -0.41 0.95 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -32.95 358.75 -9.01 -41.96 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.17 Total: 8.51 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -5.27 Total: -2.83 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.65 Total: -59.47 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.71 Total: 15.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.95 -9.01 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987178283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.714 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds