Wall clock time and date at job start Sat Apr 11 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.87585 * 2 1 4 4 C 1.54370 * 110.03163 * 121.06780 * 2 1 3 5 5 H 1.08997 * 110.75909 * 260.01599 * 4 2 1 6 6 N 1.46501 * 110.70344 * 23.30503 * 4 2 1 7 7 C 1.36941 * 119.99744 * 236.26207 * 6 4 2 8 8 H 1.08008 * 119.99921 * 0.02562 * 7 6 4 9 9 C 1.38812 * 119.99936 * 179.97438 * 7 6 4 10 10 N 1.31615 * 119.99708 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00207 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47100 * 89.99318 * 11 9 7 13 13 H 1.48495 * 109.47590 * 210.00189 * 11 9 7 14 14 H 1.48510 * 109.47026 * 330.00023 * 11 9 7 15 15 C 1.55158 * 102.92216 * 141.64573 * 4 2 1 16 16 C 1.54903 * 101.61638 * 324.54810 * 15 4 2 17 17 N 1.47025 * 109.88127 * 238.98391 * 2 1 3 18 18 C 1.34774 * 125.64425 * 61.52713 * 17 2 1 19 19 O 1.21578 * 119.99775 * 172.76725 * 18 17 2 20 20 C 1.47671 * 120.00573 * 352.75864 * 18 17 2 21 21 C 1.39704 * 120.07701 * 17.19875 * 20 18 17 22 22 C 1.37739 * 119.91706 * 179.79120 * 21 20 18 23 23 C 1.39019 * 120.07677 * 0.46501 * 22 21 20 24 24 N 1.39937 * 119.91348 * 179.76679 * 23 22 21 25 25 C 1.36353 * 127.11002 * 179.70943 * 24 23 22 26 26 N 1.30512 * 107.18991 * 179.87044 * 25 24 23 27 27 N 1.28538 * 109.92055 * 0.40185 * 26 25 24 28 28 C 1.30504 * 109.91778 * 359.74339 * 27 26 25 29 29 C 1.39017 * 120.16804 * 359.79126 * 23 22 21 30 30 C 1.37742 * 120.08036 * 359.97438 * 29 23 22 31 31 H 1.09002 * 109.47104 * 203.83558 * 1 2 3 32 32 H 1.09004 * 109.47180 * 323.83053 * 1 2 3 33 33 H 1.08997 * 109.47581 * 83.82850 * 1 2 3 34 34 H 0.96998 * 120.00579 * 56.26773 * 6 4 2 35 35 H 0.97008 * 120.00145 * 179.97438 * 10 9 7 36 36 H 1.08998 * 111.00530 * 206.44885 * 15 4 2 37 37 H 1.09009 * 110.99845 * 82.64072 * 15 4 2 38 38 H 1.09003 * 110.36982 * 155.82611 * 16 15 4 39 39 H 1.09003 * 110.36869 * 278.03872 * 16 15 4 40 40 H 1.07996 * 120.03929 * 359.97438 * 21 20 18 41 41 H 1.07995 * 119.95604 * 180.23085 * 22 21 20 42 42 H 1.08000 * 126.40697 * 359.97438 * 25 24 23 43 43 H 1.08004 * 126.39899 * 180.02562 * 28 27 26 44 44 H 1.07997 * 119.96719 * 179.97438 * 29 23 22 45 45 H 1.07998 * 120.04243 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0587 -0.7484 1.2423 5 1 2.3571 -0.0447 2.0193 6 7 1.0537 -1.6864 1.7486 7 6 0.6294 -1.5999 3.0477 8 1 1.0354 -0.8399 3.6989 9 6 -0.3233 -2.4883 3.5273 10 7 -0.7314 -2.4048 4.7758 11 14 -1.0260 -3.8023 2.4008 12 1 -0.1953 -5.0297 2.4934 13 1 -2.4182 -4.1145 2.8125 14 1 -1.0232 -3.3072 1.0007 15 6 3.2917 -1.5108 0.6893 16 6 2.8175 -1.8763 -0.7394 17 7 2.0299 -0.7124 -1.1849 18 6 1.8060 -0.3594 -2.4662 19 8 2.3761 -0.9446 -3.3665 20 6 0.8680 0.7381 -2.7767 21 6 0.4902 1.6396 -1.7785 22 6 -0.3816 2.6646 -2.0728 23 6 -0.8928 2.7969 -3.3588 24 7 -1.7820 3.8366 -3.6528 25 6 -2.3643 4.1056 -4.8560 26 7 -3.1219 5.1556 -4.6917 27 7 -3.0463 5.5642 -3.4754 28 6 -2.2408 4.7936 -2.7968 29 6 -0.5233 1.8985 -4.3533 30 6 0.3518 0.8739 -4.0676 31 1 -0.3633 -0.9400 0.4153 32 1 -0.3634 0.8296 0.6065 33 1 -0.3634 0.1105 -1.0216 34 1 0.6888 -2.3688 1.1637 35 1 -1.3975 -3.0254 5.1109 36 1 3.4921 -2.4074 1.2758 37 1 4.1685 -0.8640 0.6565 38 1 3.6741 -2.0285 -1.3961 39 1 2.1952 -2.7709 -0.7153 40 1 0.8835 1.5347 -0.7782 41 1 -0.6711 3.3641 -1.3026 42 1 -2.2260 3.5522 -5.7731 43 1 -1.9856 4.8949 -1.7522 44 1 -0.9227 2.0040 -5.3511 45 1 0.6381 0.1761 -4.8406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987178283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:58 Heat of formation + Delta-G solvation = 128.678917 kcal Electronic energy + Delta-G solvation = -29620.942439 eV Core-core repulsion = 25641.902783 eV Total energy + Delta-G solvation = -3979.039657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.31624 -42.07223 -40.01161 -39.00287 -36.26448 -35.81907 -33.74799 -33.33669 -32.22185 -31.51159 -30.93467 -30.50363 -27.15101 -25.84974 -25.13146 -24.77702 -23.91519 -22.66504 -22.21002 -21.49351 -20.54808 -19.98279 -19.56049 -18.45490 -17.51164 -17.26431 -16.88928 -16.75181 -16.42828 -16.20826 -15.93621 -15.75053 -15.37373 -15.12693 -14.97603 -14.72642 -14.62866 -14.25165 -14.08872 -13.85408 -13.74057 -13.41176 -13.16108 -12.87767 -12.65757 -12.51733 -12.36335 -12.29069 -12.21831 -11.88737 -11.85516 -11.78282 -11.60151 -11.55153 -11.12252 -10.95467 -10.63294 -10.09359 -9.80649 -9.53867 -9.28638 -7.99404 -5.31367 -0.66443 0.18843 0.83388 1.27392 1.37284 1.38803 1.45706 1.71839 1.74548 1.91477 2.48318 2.66804 3.27756 3.30707 3.33046 3.49451 3.54675 3.60396 3.71421 3.79521 3.85000 3.97975 4.05835 4.17690 4.21736 4.24328 4.33029 4.46262 4.51976 4.56190 4.70425 4.79145 4.81936 4.92652 4.94056 4.96217 5.05349 5.13427 5.19196 5.22825 5.27277 5.35433 5.45294 5.56663 5.83452 5.92534 6.24294 6.45500 7.00292 7.09657 7.53093 7.85051 8.01429 9.21559 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012220 B = 0.003184 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.716449 B = 8792.726968 C =10140.913091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 H 0.117 0.883 4 C 0.167 3.833 5 H 0.100 0.900 6 N -0.732 5.732 7 C -0.216 4.216 8 H 0.074 0.926 9 C -0.054 4.054 10 N -0.980 5.980 11 Si 0.935 3.065 12 H -0.285 1.285 13 H -0.303 1.303 14 H -0.257 1.257 15 C -0.143 4.143 16 C 0.106 3.894 17 N -0.602 5.602 18 C 0.569 3.431 19 O -0.580 6.580 20 C -0.155 4.155 21 C -0.069 4.069 22 C -0.140 4.140 23 C 0.152 3.848 24 N -0.432 5.432 25 C 0.170 3.830 26 N -0.336 5.336 27 N -0.336 5.336 28 C 0.171 3.829 29 C -0.136 4.136 30 C -0.038 4.038 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.363 0.637 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.259 0.741 43 H 0.258 0.742 44 H 0.167 0.833 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 10.271 -17.404 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.003 4.003 3 H 0.135 0.865 4 C 0.057 3.943 5 H 0.118 0.882 6 N -0.373 5.373 7 C -0.346 4.346 8 H 0.091 0.909 9 C -0.246 4.246 10 N -0.630 5.630 11 Si 0.765 3.235 12 H -0.212 1.212 13 H -0.231 1.231 14 H -0.182 1.182 15 C -0.183 4.183 16 C -0.017 4.017 17 N -0.334 5.334 18 C 0.360 3.640 19 O -0.462 6.462 20 C -0.158 4.158 21 C -0.087 4.087 22 C -0.160 4.160 23 C 0.058 3.942 24 N -0.118 5.118 25 C -0.117 4.117 26 N -0.172 5.172 27 N -0.172 5.172 28 C -0.116 4.116 29 C -0.155 4.155 30 C -0.058 4.058 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.197 0.803 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.196 0.804 41 H 0.183 0.817 42 H 0.275 0.725 43 H 0.273 0.727 44 H 0.184 0.816 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.854 11.257 -18.041 21.611 hybrid contribution 0.056 -2.394 0.079 2.396 sum 3.910 8.862 -17.962 20.407 Atomic orbital electron populations 1.22718 0.94483 1.04281 1.01746 1.22802 0.95123 0.97108 0.85304 0.86546 1.21483 0.87868 0.91557 0.93410 0.88186 1.42769 1.47782 1.37207 1.09493 1.19081 1.16331 1.12031 0.87206 0.90859 1.25259 1.00752 1.01648 0.96925 1.69833 1.35907 1.41153 1.16141 0.85733 0.77330 0.80634 0.79830 1.21196 1.23081 1.18181 1.23336 0.98912 1.02315 0.93742 1.22237 0.95158 0.87901 0.96373 1.48550 1.51307 1.28568 1.04938 1.18208 0.81469 0.83296 0.81040 1.90745 1.52043 1.57297 1.46141 1.19952 1.01677 0.98059 0.96131 1.22691 0.94073 0.90869 1.01022 1.21090 0.99450 1.00497 0.94959 1.18075 0.91993 0.88291 0.95806 1.44391 1.34130 1.22650 1.10649 1.27527 0.94474 0.97552 0.92113 1.74171 1.20497 1.11525 1.10997 1.74179 1.18487 1.24796 0.99732 1.27524 0.96093 0.87110 1.00847 1.20978 1.00047 0.94463 1.00059 1.21164 0.93102 0.96380 0.95145 0.92838 0.89933 0.91351 0.80347 0.93594 0.89953 0.88259 0.90268 0.92850 0.80424 0.81663 0.72498 0.72658 0.81600 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.33 7.52 71.98 0.54 -3.79 16 2 C 0.10 2.28 2.72 45.35 0.12 2.40 16 3 H 0.12 1.90 6.25 -2.39 -0.01 1.88 16 4 C 0.17 4.61 3.59 46.20 0.17 4.78 16 5 H 0.10 2.69 7.85 -2.39 -0.02 2.67 16 6 N -0.73 -27.59 3.14 -317.24 -0.99 -28.59 16 7 C -0.22 -10.42 10.42 84.03 0.88 -9.54 16 8 H 0.07 3.83 7.91 -2.91 -0.02 3.80 16 9 C -0.05 -2.88 5.50 84.86 0.47 -2.41 16 10 N -0.98 -58.30 13.97 21.65 0.30 -57.99 16 11 Si 0.94 42.44 27.74 68.60 1.90 44.34 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 14 H -0.26 -10.57 6.52 99.48 0.65 -9.93 16 15 C -0.14 -3.38 6.77 31.98 0.22 -3.17 16 16 C 0.11 2.69 6.92 86.85 0.60 3.29 16 17 N -0.60 -15.06 3.07 -791.55 -2.43 -17.49 16 18 C 0.57 15.15 7.58 86.74 0.66 15.80 16 19 O -0.58 -19.13 16.70 -3.96 -0.07 -19.20 16 20 C -0.15 -3.13 5.00 -20.08 -0.10 -3.23 16 21 C -0.07 -1.08 6.28 22.51 0.14 -0.94 16 22 C -0.14 -1.72 9.46 22.34 0.21 -1.51 16 23 C 0.15 1.98 6.65 38.22 0.25 2.23 16 24 N -0.43 -6.14 2.99 -353.76 -1.06 -7.19 16 25 C 0.17 2.53 12.06 179.84 2.17 4.70 16 26 N -0.34 -7.78 12.19 -59.46 -0.73 -8.51 16 27 N -0.34 -7.91 12.19 -59.46 -0.73 -8.64 16 28 C 0.17 2.67 12.06 179.84 2.17 4.84 16 29 C -0.14 -1.65 9.46 22.34 0.21 -1.44 16 30 C -0.04 -0.65 9.58 22.50 0.22 -0.43 16 31 H 0.05 1.76 5.79 -2.39 -0.01 1.74 16 32 H 0.08 1.82 8.01 -2.38 -0.02 1.80 16 33 H 0.07 1.56 4.50 -2.39 -0.01 1.55 16 34 H 0.36 14.07 5.15 -92.71 -0.48 13.59 16 35 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.08 1.96 7.97 -2.39 -0.02 1.95 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.18 2.62 2.51 -2.91 -0.01 2.61 16 41 H 0.17 1.11 6.84 -2.91 -0.02 1.09 16 42 H 0.26 1.37 7.17 -2.91 -0.02 1.35 16 43 H 0.26 1.74 7.17 -2.91 -0.02 1.72 16 44 H 0.17 0.96 6.84 -2.91 -0.02 0.94 16 45 H 0.14 2.44 7.75 -2.91 -0.02 2.42 16 Total: -1.00 -74.65 358.75 5.65 -69.00 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.53 Total: 22.69 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 8.92 Total: 11.58 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -5.63 Total: -128.41 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.07 Total: -19.20 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.90 Total: 44.34 kcal Total: -74.65 5.65 -69.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987178283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.676 kcal (2) G-P(sol) polarization free energy of solvation -74.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds