Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.99907 * 2 1 4 4 C 1.54327 * 109.88423 * 121.09377 * 2 1 3 5 5 H 1.09000 * 110.86927 * 23.17502 * 4 2 1 6 6 N 1.46493 * 110.72146 * 259.97542 * 4 2 1 7 7 C 1.36937 * 120.00401 * 160.02297 * 6 4 2 8 8 H 1.08001 * 119.99545 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00446 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99942 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00239 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47225 * 59.99628 * 11 9 7 13 13 H 1.48497 * 109.47498 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47195 * 299.99880 * 11 9 7 15 15 C 1.55155 * 102.93997 * 141.60922 * 4 2 1 16 16 C 1.54904 * 101.58303 * 324.49765 * 15 4 2 17 17 N 1.47028 * 109.88085 * 238.90177 * 2 1 3 18 18 C 1.34774 * 125.64882 * 61.91368 * 17 2 1 19 19 O 1.21611 * 119.99856 * 358.39705 * 18 17 2 20 20 C 1.47415 * 120.00279 * 178.40453 * 18 17 2 21 21 C 1.41366 * 126.40493 * 8.42515 * 20 18 17 22 22 N 1.30449 * 108.07608 * 179.88219 * 21 20 18 23 23 N 1.39934 * 108.91750 * 0.37467 * 22 21 20 24 24 C 1.39912 * 125.78070 * 179.77508 * 23 22 21 25 25 C 1.39326 * 120.85565 * 179.70508 * 24 23 22 26 26 C 1.38014 * 119.07803 * 179.70858 * 25 24 23 27 27 N 1.31938 * 120.82869 * 0.57692 * 26 25 24 28 28 C 1.31939 * 121.88704 * 359.71395 * 27 26 25 29 29 C 1.38000 * 120.83342 * 359.97438 * 28 27 26 30 30 C 1.34609 * 108.44512 * 359.76110 * 23 22 21 31 31 H 1.08997 * 109.46705 * 179.64500 * 1 2 3 32 32 H 1.08998 * 109.46941 * 299.64471 * 1 2 3 33 33 H 1.09000 * 109.46922 * 59.64061 * 1 2 3 34 34 H 0.97008 * 120.00219 * 340.02398 * 6 4 2 35 35 H 0.97002 * 120.00328 * 180.02562 * 10 9 7 36 36 H 1.09007 * 111.00288 * 206.42294 * 15 4 2 37 37 H 1.09002 * 111.03735 * 82.59623 * 15 4 2 38 38 H 1.09000 * 110.36822 * 278.17017 * 16 15 4 39 39 H 1.09003 * 110.45832 * 155.89843 * 16 15 4 40 40 H 1.08001 * 125.96643 * 0.03023 * 21 20 18 41 41 H 1.07999 * 120.46270 * 359.97289 * 25 24 23 42 42 H 1.07991 * 119.58421 * 180.31363 * 26 25 24 43 43 H 1.08002 * 119.58079 * 180.02562 * 28 27 26 44 44 H 1.07998 * 120.46095 * 179.97438 * 29 28 27 45 45 H 1.08003 * 126.30938 * 180.02562 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 1 1.3065 -1.4458 1.6211 6 7 2.4555 0.1961 2.2875 7 6 2.5576 -0.2225 3.5873 8 1 2.3423 -1.2496 3.8423 9 6 2.9366 0.6736 4.5773 10 7 3.1985 1.9255 4.2667 11 14 3.0752 0.1028 6.3506 12 1 4.0842 -0.9827 6.4438 13 1 3.4940 1.2420 7.2061 14 1 1.7579 -0.4049 6.8115 15 6 3.2876 -1.5142 0.6924 16 6 2.8145 -1.8794 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8122 -0.3589 -2.4656 19 8 1.1270 0.6133 -2.7191 20 6 2.4046 -1.1488 -3.5603 21 6 3.0770 -2.3858 -3.4337 22 7 3.4514 -2.7666 -4.6239 23 7 3.0508 -1.8026 -5.5557 24 6 3.2763 -1.8552 -6.9355 25 6 2.8251 -0.8369 -7.7726 26 6 3.0729 -0.9231 -9.1275 27 7 3.7174 -1.9578 -9.6325 28 6 4.1550 -2.9444 -8.8736 29 6 3.9529 -2.9299 -7.5085 30 6 2.4115 -0.8161 -4.8998 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3633 0.5083 0.8931 33 1 -0.3633 0.5194 -0.8867 34 1 2.6485 1.1188 2.0585 35 1 3.4637 2.5517 4.9584 36 1 3.4853 -2.4110 1.2796 37 1 4.1659 -0.8694 0.6604 38 1 2.1886 -2.7715 -0.7127 39 1 3.6705 -2.0350 -1.3933 40 1 3.2486 -2.9231 -2.5127 41 1 2.2926 0.0103 -7.3663 42 1 2.7314 -0.1360 -9.7832 43 1 4.6788 -3.7733 -9.3263 44 1 4.3133 -3.7409 -6.8931 45 1 1.9826 0.0717 -5.3406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987267256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 118.164087 kcal Electronic energy + Delta-G solvation = -28469.274162 eV Core-core repulsion = 24489.778548 eV Total energy + Delta-G solvation = -3979.495614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.21142 -40.48386 -39.66078 -37.34466 -34.96161 -34.12229 -32.05915 -31.87288 -31.04011 -30.87078 -30.22280 -28.96305 -25.49486 -25.03527 -24.35992 -23.28031 -23.14206 -21.51634 -21.36675 -20.10979 -19.57678 -18.45775 -17.26831 -16.98399 -16.46657 -16.25468 -16.09287 -15.90994 -15.52664 -15.02405 -14.66746 -14.60420 -14.29770 -14.21229 -13.84143 -13.69536 -13.42957 -13.20059 -12.89777 -12.80729 -12.35285 -12.20198 -11.89604 -11.56444 -11.39965 -11.38661 -11.12578 -11.05814 -10.83814 -10.61329 -10.29837 -10.17204 -10.06278 -9.82010 -9.80994 -9.75996 -9.66799 -8.96250 -8.93479 -8.42059 -7.05695 -5.83559 -3.14224 0.11171 0.51112 1.51044 1.66929 1.86979 3.05518 3.24903 3.38057 3.40016 3.44909 3.45915 3.81189 3.89116 4.10561 4.34123 4.37843 4.52628 4.55633 4.61710 4.84564 4.92946 4.94439 5.04272 5.17910 5.20340 5.23255 5.35721 5.43676 5.46803 5.53217 5.64529 5.75264 5.88565 5.93954 5.98716 6.07041 6.10175 6.26604 6.42785 6.44074 6.55410 6.60002 6.71108 6.89820 7.02042 7.38668 7.63087 7.70783 8.30230 8.34033 9.45133 9.99452 10.33996 11.38443 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.001992 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.796813 B =14054.321506 C =14475.877277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.079 0.921 4 C 0.176 3.824 5 H 0.066 0.934 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.085 3.915 17 N -0.601 5.601 18 C 0.605 3.395 19 O -0.547 6.547 20 C -0.261 4.261 21 C 0.083 3.917 22 N -0.289 5.289 23 N -0.322 5.322 24 C 0.205 3.795 25 C -0.196 4.196 26 C 0.129 3.871 27 N -0.493 5.493 28 C 0.124 3.876 29 C -0.172 4.172 30 C 0.125 3.875 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.213 0.787 41 H 0.146 0.854 42 H 0.168 0.832 43 H 0.167 0.833 44 H 0.151 0.849 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 -9.919 -24.533 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 H 0.097 0.903 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.039 4.039 17 N -0.334 5.334 18 C 0.394 3.606 19 O -0.426 6.426 20 C -0.275 4.275 21 C -0.106 4.106 22 N -0.105 5.105 23 N -0.095 5.095 24 C 0.105 3.895 25 C -0.219 4.219 26 C -0.028 4.028 27 N -0.203 5.203 28 C -0.032 4.032 29 C -0.194 4.194 30 C -0.020 4.020 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.229 0.771 41 H 0.163 0.837 42 H 0.185 0.815 43 H 0.184 0.816 44 H 0.169 0.831 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.344 -10.374 -26.170 28.153 hybrid contribution -0.279 0.638 2.457 2.554 sum 0.065 -9.735 -23.713 25.634 Atomic orbital electron populations 1.22052 0.94760 1.01673 1.02786 1.21917 0.94500 0.96878 0.84057 0.90300 1.21247 0.93504 0.91641 0.87144 0.91642 1.42338 1.80947 1.09109 1.03100 1.19146 1.39439 0.95125 0.83821 0.91023 1.24769 1.02068 0.95642 0.98170 1.69653 1.52366 1.02982 1.32709 0.86253 0.77819 0.77281 0.84699 1.21211 1.21698 1.21190 1.23598 1.01534 1.01894 0.92723 1.22809 0.94807 0.88725 0.97515 1.48279 1.51929 1.28484 1.04665 1.16694 0.80036 0.83328 0.80580 1.90770 1.40165 1.28334 1.83327 1.20414 1.13516 0.99990 0.93602 1.25166 0.94073 0.94594 0.96718 1.77293 1.23300 1.11953 0.97985 1.45605 1.42471 1.16535 1.04858 1.17834 0.96588 0.95964 0.79155 1.21975 1.04904 0.99885 0.95115 1.22703 0.92813 0.95478 0.91810 1.67729 1.10434 1.01815 1.40307 1.22781 0.94847 0.96313 0.89290 1.21975 1.01346 0.99042 0.97046 1.23026 0.93687 0.93568 0.91757 0.93055 0.91106 0.91882 0.77967 0.93311 0.90406 0.90487 0.91234 0.90532 0.77094 0.83667 0.81501 0.81621 0.83100 0.78922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.11 37.16 0.34 -2.17 16 2 C 0.13 2.22 3.21 -66.95 -0.22 2.00 16 3 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 4 C 0.18 3.23 3.11 -66.10 -0.21 3.02 16 5 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 6 N -0.71 -16.85 5.25 -51.66 -0.27 -17.12 16 7 C -0.24 -6.40 9.98 -15.06 -0.15 -6.55 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 11 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 C -0.16 -2.39 6.77 -24.59 -0.17 -2.56 16 16 C 0.08 1.02 5.28 -2.53 -0.01 1.00 16 17 N -0.60 -8.91 3.06 -164.27 -0.50 -9.41 16 18 C 0.60 9.23 7.64 -12.53 -0.10 9.13 16 19 O -0.55 -9.90 15.91 5.27 0.08 -9.82 16 20 C -0.26 -3.24 6.06 -105.05 -0.64 -3.87 16 21 C 0.08 0.90 10.29 -16.95 -0.17 0.72 16 22 N -0.29 -3.27 11.87 30.88 0.37 -2.90 16 23 N -0.32 -3.39 3.76 -10.03 -0.04 -3.42 16 24 C 0.21 1.84 6.73 -83.36 -0.56 1.28 16 25 C -0.20 -1.35 9.52 -39.26 -0.37 -1.73 16 26 C 0.13 0.84 11.18 -17.59 -0.20 0.64 16 27 N -0.49 -3.99 10.36 -13.32 -0.14 -4.13 16 28 C 0.12 0.86 11.17 -17.59 -0.20 0.66 16 29 C -0.17 -1.36 9.73 -39.26 -0.38 -1.74 16 30 C 0.13 1.34 10.65 -16.42 -0.17 1.16 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.06 6.85 -51.93 -0.36 0.70 16 34 H 0.39 9.88 7.51 -40.82 -0.31 9.57 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 39 H 0.08 0.77 5.25 -51.93 -0.27 0.50 16 40 H 0.21 1.77 4.81 -52.49 -0.25 1.51 16 41 H 0.15 0.71 6.85 -52.49 -0.36 0.35 16 42 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.15 1.12 7.78 -52.49 -0.41 0.72 16 45 H 0.19 1.59 7.09 -52.48 -0.37 1.22 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -33.29 374.56 -8.09 -41.37 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.63 Total: 9.08 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.30 Total: 0.64 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: 0.14 Total: -63.52 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.29 -8.09 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987267256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.537 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds