Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.99907 * 2 1 4 4 C 1.54327 * 109.88423 * 121.09377 * 2 1 3 5 5 H 1.09000 * 110.86927 * 23.17502 * 4 2 1 6 6 N 1.46493 * 110.72146 * 259.97542 * 4 2 1 7 7 C 1.36937 * 120.00401 * 160.02297 * 6 4 2 8 8 H 1.08001 * 119.99545 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00446 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99942 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00239 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47225 * 59.99628 * 11 9 7 13 13 H 1.48497 * 109.47498 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47195 * 299.99880 * 11 9 7 15 15 C 1.55155 * 102.93997 * 141.60922 * 4 2 1 16 16 C 1.54904 * 101.58303 * 324.49765 * 15 4 2 17 17 N 1.47028 * 109.88085 * 238.90177 * 2 1 3 18 18 C 1.34774 * 125.64882 * 61.91368 * 17 2 1 19 19 O 1.21611 * 119.99856 * 358.39705 * 18 17 2 20 20 C 1.47415 * 120.00279 * 178.40453 * 18 17 2 21 21 C 1.41366 * 126.40493 * 8.42515 * 20 18 17 22 22 N 1.30449 * 108.07608 * 179.88219 * 21 20 18 23 23 N 1.39934 * 108.91750 * 0.37467 * 22 21 20 24 24 C 1.39912 * 125.78070 * 179.77508 * 23 22 21 25 25 C 1.39326 * 120.85565 * 179.70508 * 24 23 22 26 26 C 1.38014 * 119.07803 * 179.70858 * 25 24 23 27 27 N 1.31938 * 120.82869 * 0.57692 * 26 25 24 28 28 C 1.31939 * 121.88704 * 359.71395 * 27 26 25 29 29 C 1.38000 * 120.83342 * 359.97438 * 28 27 26 30 30 C 1.34609 * 108.44512 * 359.76110 * 23 22 21 31 31 H 1.08997 * 109.46705 * 179.64500 * 1 2 3 32 32 H 1.08998 * 109.46941 * 299.64471 * 1 2 3 33 33 H 1.09000 * 109.46922 * 59.64061 * 1 2 3 34 34 H 0.97008 * 120.00219 * 340.02398 * 6 4 2 35 35 H 0.97002 * 120.00328 * 180.02562 * 10 9 7 36 36 H 1.09007 * 111.00288 * 206.42294 * 15 4 2 37 37 H 1.09002 * 111.03735 * 82.59623 * 15 4 2 38 38 H 1.09000 * 110.36822 * 278.17017 * 16 15 4 39 39 H 1.09003 * 110.45832 * 155.89843 * 16 15 4 40 40 H 1.08001 * 125.96643 * 0.03023 * 21 20 18 41 41 H 1.07999 * 120.46270 * 359.97289 * 25 24 23 42 42 H 1.07991 * 119.58421 * 180.31363 * 26 25 24 43 43 H 1.08002 * 119.58079 * 180.02562 * 28 27 26 44 44 H 1.07998 * 120.46095 * 179.97438 * 29 28 27 45 45 H 1.08003 * 126.30938 * 180.02562 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 1 1.3065 -1.4458 1.6211 6 7 2.4555 0.1961 2.2875 7 6 2.5576 -0.2225 3.5873 8 1 2.3423 -1.2496 3.8423 9 6 2.9366 0.6736 4.5773 10 7 3.1985 1.9255 4.2667 11 14 3.0752 0.1028 6.3506 12 1 4.0842 -0.9827 6.4438 13 1 3.4940 1.2420 7.2061 14 1 1.7579 -0.4049 6.8115 15 6 3.2876 -1.5142 0.6924 16 6 2.8145 -1.8794 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8122 -0.3589 -2.4656 19 8 1.1270 0.6133 -2.7191 20 6 2.4046 -1.1488 -3.5603 21 6 3.0770 -2.3858 -3.4337 22 7 3.4514 -2.7666 -4.6239 23 7 3.0508 -1.8026 -5.5557 24 6 3.2763 -1.8552 -6.9355 25 6 2.8251 -0.8369 -7.7726 26 6 3.0729 -0.9231 -9.1275 27 7 3.7174 -1.9578 -9.6325 28 6 4.1550 -2.9444 -8.8736 29 6 3.9529 -2.9299 -7.5085 30 6 2.4115 -0.8161 -4.8998 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3633 0.5083 0.8931 33 1 -0.3633 0.5194 -0.8867 34 1 2.6485 1.1188 2.0585 35 1 3.4637 2.5517 4.9584 36 1 3.4853 -2.4110 1.2796 37 1 4.1659 -0.8694 0.6604 38 1 2.1886 -2.7715 -0.7127 39 1 3.6705 -2.0350 -1.3933 40 1 3.2486 -2.9231 -2.5127 41 1 2.2926 0.0103 -7.3663 42 1 2.7314 -0.1360 -9.7832 43 1 4.6788 -3.7733 -9.3263 44 1 4.3133 -3.7409 -6.8931 45 1 1.9826 0.0717 -5.3406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987267256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = 96.461361 kcal Electronic energy + Delta-G solvation = -28470.215262 eV Core-core repulsion = 24489.778548 eV Total energy + Delta-G solvation = -3980.436715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.00893 -41.25302 -40.68964 -38.66691 -36.00363 -35.52299 -33.43727 -32.61839 -32.38282 -31.62576 -31.30992 -30.33169 -26.94055 -25.99815 -25.14700 -24.64591 -24.22164 -22.48103 -22.22315 -21.42504 -20.58035 -19.46285 -19.03960 -17.86116 -17.45446 -17.07454 -16.79568 -16.78029 -16.56766 -16.33146 -15.99761 -15.44837 -15.34810 -15.25923 -14.80417 -14.78798 -14.67423 -14.49680 -14.08149 -14.04954 -13.60214 -13.24052 -13.05338 -12.93642 -12.81664 -12.57756 -12.44436 -12.24516 -12.18814 -12.14808 -12.02590 -11.68394 -11.49222 -10.99252 -10.84707 -10.69160 -10.56336 -10.32207 -9.80407 -9.55583 -8.99440 -7.91301 -5.20954 -0.56489 0.00563 0.68080 0.93229 1.05979 1.51215 1.53703 1.59499 1.91175 2.29060 2.59714 2.72210 3.08486 3.39616 3.42953 3.47588 3.58158 3.69231 3.75913 3.80069 3.87691 3.99839 4.06373 4.13803 4.19507 4.32771 4.39160 4.41210 4.43695 4.54137 4.62090 4.70887 4.72676 4.76002 4.86945 4.94558 5.08253 5.17959 5.25804 5.27431 5.38820 5.42090 5.49639 5.58153 5.74336 6.22150 6.28903 6.55589 6.86999 7.13066 7.35492 8.08236 8.31467 9.31967 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.001992 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.796813 B =14054.321506 C =14475.877277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.136 3.864 3 H 0.047 0.953 4 C 0.170 3.830 5 H 0.073 0.927 6 N -0.729 5.729 7 C -0.234 4.234 8 H 0.084 0.916 9 C -0.077 4.077 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.276 1.276 13 H -0.302 1.302 14 H -0.278 1.278 15 C -0.148 4.148 16 C 0.091 3.909 17 N -0.602 5.602 18 C 0.605 3.395 19 O -0.584 6.584 20 C -0.285 4.285 21 C 0.090 3.910 22 N -0.304 5.304 23 N -0.319 5.319 24 C 0.177 3.823 25 C -0.192 4.192 26 C 0.127 3.873 27 N -0.512 5.512 28 C 0.124 3.876 29 C -0.177 4.177 30 C 0.134 3.866 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.371 0.629 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.234 0.766 41 H 0.165 0.835 42 H 0.196 0.804 43 H 0.191 0.809 44 H 0.152 0.848 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -12.316 -26.135 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.065 0.935 4 C 0.061 3.939 5 H 0.091 0.909 6 N -0.368 5.368 7 C -0.366 4.366 8 H 0.102 0.898 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.202 1.202 13 H -0.229 1.229 14 H -0.204 1.204 15 C -0.189 4.189 16 C -0.031 4.031 17 N -0.334 5.334 18 C 0.395 3.605 19 O -0.466 6.466 20 C -0.299 4.299 21 C -0.098 4.098 22 N -0.120 5.120 23 N -0.091 5.091 24 C 0.077 3.923 25 C -0.215 4.215 26 C -0.029 4.029 27 N -0.222 5.222 28 C -0.033 4.033 29 C -0.199 4.199 30 C -0.013 4.013 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.203 0.797 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.250 0.750 41 H 0.182 0.818 42 H 0.212 0.788 43 H 0.208 0.792 44 H 0.170 0.830 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.446 -12.862 -27.824 30.657 hybrid contribution -0.322 1.355 2.750 3.082 sum 0.124 -11.508 -25.074 27.589 Atomic orbital electron populations 1.21944 0.94116 1.02496 1.01717 1.21614 0.94919 0.95422 0.84855 0.93513 1.21450 0.95019 0.91093 0.86378 0.90941 1.42516 1.81326 1.09338 1.03667 1.19580 1.36817 0.95375 0.84823 0.89769 1.25572 1.03356 0.95886 1.02141 1.69826 1.54812 1.04203 1.33356 0.85219 0.78063 0.76501 0.80003 1.20150 1.22865 1.20389 1.23407 0.98995 1.01478 0.94992 1.22989 0.96016 0.88568 0.95530 1.48277 1.52105 1.29002 1.04040 1.17063 0.79445 0.82990 0.80979 1.90744 1.41944 1.30073 1.83862 1.20178 1.15487 1.00920 0.93288 1.25426 0.93175 0.93879 0.97347 1.77267 1.23890 1.12621 0.98244 1.45713 1.41894 1.16114 1.05424 1.18201 0.98118 0.97308 0.78640 1.22240 1.04303 0.99834 0.95095 1.23202 0.91987 0.95659 0.92087 1.67791 1.10968 1.02509 1.40945 1.23175 0.94449 0.96727 0.88913 1.22085 1.01330 0.98917 0.97526 1.23348 0.92589 0.93882 0.91460 0.91190 0.92326 0.92745 0.79742 0.94202 0.88855 0.92621 0.87889 0.87934 0.74999 0.81783 0.78758 0.79204 0.83031 0.77034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.11 71.98 0.66 -4.03 16 2 C 0.14 4.68 3.21 45.34 0.15 4.83 16 3 H 0.05 1.91 7.69 -2.39 -0.02 1.89 16 4 C 0.17 6.13 3.11 46.18 0.14 6.27 16 5 H 0.07 2.53 7.84 -2.39 -0.02 2.51 16 6 N -0.73 -34.94 5.25 -317.34 -1.67 -36.61 16 7 C -0.23 -12.26 9.98 84.03 0.84 -11.42 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 10 N -0.97 -58.71 13.06 21.65 0.28 -58.42 16 11 Si 0.97 44.80 29.55 68.60 2.03 46.82 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 15 C -0.15 -4.28 6.77 31.98 0.22 -4.07 16 16 C 0.09 1.93 5.28 86.85 0.46 2.39 16 17 N -0.60 -17.18 3.06 -791.90 -2.43 -19.61 16 18 C 0.60 17.97 7.64 86.66 0.66 18.63 16 19 O -0.58 -21.30 15.91 -4.07 -0.06 -21.37 16 20 C -0.28 -6.59 6.06 -20.14 -0.12 -6.71 16 21 C 0.09 1.72 10.29 85.67 0.88 2.60 16 22 N -0.30 -6.26 11.87 -56.22 -0.67 -6.93 16 23 N -0.32 -6.16 3.76 -185.65 -0.70 -6.86 16 24 C 0.18 2.87 6.73 38.38 0.26 3.13 16 25 C -0.19 -2.25 9.52 22.48 0.21 -2.03 16 26 C 0.13 1.37 11.18 84.62 0.95 2.31 16 27 N -0.51 -7.26 10.36 -196.07 -2.03 -9.29 16 28 C 0.12 1.48 11.17 84.62 0.95 2.43 16 29 C -0.18 -2.52 9.73 22.48 0.22 -2.30 16 30 C 0.13 2.65 10.65 84.21 0.90 3.55 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.85 6.85 -2.39 -0.02 1.84 16 34 H 0.37 19.80 7.51 -92.70 -0.70 19.10 16 35 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 1.60 8.03 -2.39 -0.02 1.58 16 39 H 0.10 1.71 5.25 -2.39 -0.01 1.70 16 40 H 0.23 3.04 4.81 -2.91 -0.01 3.03 16 41 H 0.16 1.18 6.85 -2.91 -0.02 1.16 16 42 H 0.20 0.83 8.06 -2.92 -0.02 0.81 16 43 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 44 H 0.15 2.07 7.78 -2.91 -0.02 2.04 16 45 H 0.21 3.12 7.09 -2.91 -0.02 3.10 16 Total: -1.00 -73.89 374.56 2.93 -70.96 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.34 Total: 29.58 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 7.83 Total: 11.72 kcal Atomic # 7 Polarization: -130.51 SS G_CDS: -7.21 Total: -137.72 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -73.89 2.93 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987267256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.423 kcal (2) G-P(sol) polarization free energy of solvation -73.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds